Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02965 and AZOBR_RS02970 are separated by 11 nucleotides AZOBR_RS02970 and AZOBR_RS02975 are separated by 331 nucleotides AZOBR_RS02975 and AZOBR_RS02980 are separated by 7 nucleotides
AZOBR_RS02965: AZOBR_RS02965 - DNA polymerase III subunit epsilon, at 629,387 to 630,007
_RS02965
AZOBR_RS02970: AZOBR_RS02970 - DNA mismatch repair protein MutT, at 630,019 to 630,609
_RS02970
AZOBR_RS02975: AZOBR_RS02975 - hypothetical protein, at 630,941 to 631,960
_RS02975
AZOBR_RS02980: AZOBR_RS02980 - ABC transporter permease, at 631,968 to 633,296
_RS02980
Position (kb) 630
631
632 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 630.140 kb on + strand, within AZOBR_RS02970 at 630.140 kb on + strand, within AZOBR_RS02970 at 630.141 kb on - strand, within AZOBR_RS02970 at 630.141 kb on - strand, within AZOBR_RS02970 at 630.389 kb on + strand, within AZOBR_RS02970 at 630.389 kb on + strand, within AZOBR_RS02970 at 630.390 kb on - strand, within AZOBR_RS02970 at 630.491 kb on + strand, within AZOBR_RS02970 at 630.557 kb on + strand at 630.557 kb on + strand at 630.642 kb on + strand at 630.643 kb on - strand at 630.674 kb on + strand at 630.674 kb on + strand at 630.674 kb on + strand at 630.674 kb on + strand at 630.675 kb on - strand at 630.675 kb on - strand at 630.675 kb on - strand at 630.676 kb on + strand at 630.676 kb on + strand at 630.676 kb on + strand at 630.676 kb on + strand at 630.677 kb on - strand at 630.860 kb on + strand at 630.860 kb on + strand at 630.869 kb on - strand at 631.020 kb on - strand at 631.379 kb on + strand, within AZOBR_RS02975 at 631.379 kb on + strand, within AZOBR_RS02975 at 631.379 kb on + strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.700 kb on + strand, within AZOBR_RS02975 at 631.701 kb on - strand, within AZOBR_RS02975 at 632.162 kb on + strand, within AZOBR_RS02980 at 632.162 kb on + strand, within AZOBR_RS02980 at 632.162 kb on + strand, within AZOBR_RS02980 at 632.163 kb on - strand, within AZOBR_RS02980 at 632.323 kb on + strand, within AZOBR_RS02980 at 632.443 kb on + strand, within AZOBR_RS02980 at 632.443 kb on + strand, within AZOBR_RS02980 at 632.444 kb on - strand, within AZOBR_RS02980 at 632.444 kb on - strand, within AZOBR_RS02980 at 632.743 kb on + strand, within AZOBR_RS02980 at 632.743 kb on + strand, within AZOBR_RS02980 at 632.744 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.833 kb on + strand, within AZOBR_RS02980 at 632.834 kb on - strand, within AZOBR_RS02980 at 632.834 kb on - strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.951 kb on - strand, within AZOBR_RS02980
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 630,140 + AZOBR_RS02970 0.20 +0.7 630,140 + AZOBR_RS02970 0.20 -0.5 630,141 - AZOBR_RS02970 0.21 +0.1 630,141 - AZOBR_RS02970 0.21 -1.0 630,389 + AZOBR_RS02970 0.63 -1.4 630,389 + AZOBR_RS02970 0.63 -0.4 630,390 - AZOBR_RS02970 0.63 -0.4 630,491 + AZOBR_RS02970 0.80 -1.3 630,557 + +0.9 630,557 + +0.0 630,642 + +4.6 630,643 - -1.2 630,674 + +0.9 630,674 + -0.7 630,674 + -1.0 630,674 + -1.7 630,675 - -0.1 630,675 - -1.2 630,675 - -1.2 630,676 + -0.5 630,676 + -2.2 630,676 + +0.2 630,676 + -1.3 630,677 - +0.1 630,860 + -1.3 630,860 + +0.2 630,869 - +0.5 631,020 - +0.6 631,379 + AZOBR_RS02975 0.43 +1.0 631,379 + AZOBR_RS02975 0.43 -1.3 631,379 + AZOBR_RS02975 0.43 -1.1 631,380 - AZOBR_RS02975 0.43 +0.2 631,380 - AZOBR_RS02975 0.43 -1.6 631,380 - AZOBR_RS02975 0.43 -0.7 631,380 - AZOBR_RS02975 0.43 -0.4 631,700 + AZOBR_RS02975 0.74 +0.2 631,701 - AZOBR_RS02975 0.75 -0.2 632,162 + AZOBR_RS02980 0.15 -0.3 632,162 + AZOBR_RS02980 0.15 -1.2 632,162 + AZOBR_RS02980 0.15 -0.8 632,163 - AZOBR_RS02980 0.15 +1.9 632,323 + AZOBR_RS02980 0.27 -0.8 632,443 + AZOBR_RS02980 0.36 +1.0 632,443 + AZOBR_RS02980 0.36 -0.8 632,444 - AZOBR_RS02980 0.36 -0.2 632,444 - AZOBR_RS02980 0.36 +0.1 632,743 + AZOBR_RS02980 0.58 +0.9 632,743 + AZOBR_RS02980 0.58 +0.3 632,744 - AZOBR_RS02980 0.58 -0.9 632,750 - AZOBR_RS02980 0.59 +0.3 632,750 - AZOBR_RS02980 0.59 +0.5 632,750 - AZOBR_RS02980 0.59 +1.1 632,750 - AZOBR_RS02980 0.59 +1.3 632,833 + AZOBR_RS02980 0.65 -0.3 632,834 - AZOBR_RS02980 0.65 +0.9 632,834 - AZOBR_RS02980 0.65 +0.8 632,950 + AZOBR_RS02980 0.74 -0.5 632,950 + AZOBR_RS02980 0.74 +1.1 632,950 + AZOBR_RS02980 0.74 +0.3 632,950 + AZOBR_RS02980 0.74 +0.2 632,950 + AZOBR_RS02980 0.74 -0.5 632,950 + AZOBR_RS02980 0.74 +0.2 632,950 + AZOBR_RS02980 0.74 -0.4 632,951 - AZOBR_RS02980 0.74 -1.6
Or see this region's nucleotide sequence