Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS02725

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS02715 and AZOBR_RS02720 are separated by 105 nucleotidesAZOBR_RS02720 and AZOBR_RS02725 overlap by 4 nucleotidesAZOBR_RS02725 and AZOBR_RS02730 are separated by 37 nucleotidesAZOBR_RS02730 and AZOBR_RS02735 are separated by 79 nucleotides AZOBR_RS02715: AZOBR_RS02715 - C4-dicarboxylate ABC transporter, at 567,841 to 568,869 _RS02715 AZOBR_RS02720: AZOBR_RS02720 - C4-dicarboxylate ABC transporter permease, at 568,975 to 569,481 _RS02720 AZOBR_RS02725: AZOBR_RS02725 - C4-dicarboxylate ABC transporter, at 569,478 to 570,764 _RS02725 AZOBR_RS02730: AZOBR_RS02730 - multidrug DMT transporter permease, at 570,802 to 571,680 _RS02730 AZOBR_RS02735: AZOBR_RS02735 - hypothetical protein, at 571,760 to 572,173 _RS02735 Position (kb) 569 570 571Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 568.552 kb on + strand, within AZOBR_RS02715at 568.552 kb on + strand, within AZOBR_RS02715at 568.552 kb on + strand, within AZOBR_RS02715at 568.553 kb on - strand, within AZOBR_RS02715at 568.553 kb on - strand, within AZOBR_RS02715at 568.796 kb on - strandat 568.867 kb on + strandat 568.868 kb on - strandat 569.107 kb on + strand, within AZOBR_RS02720at 569.107 kb on + strand, within AZOBR_RS02720at 569.144 kb on - strand, within AZOBR_RS02720at 569.144 kb on - strand, within AZOBR_RS02720at 569.144 kb on - strand, within AZOBR_RS02720at 569.224 kb on + strand, within AZOBR_RS02720at 569.392 kb on + strand, within AZOBR_RS02720at 569.392 kb on + strand, within AZOBR_RS02720at 569.949 kb on + strand, within AZOBR_RS02725at 569.949 kb on + strand, within AZOBR_RS02725at 569.949 kb on + strand, within AZOBR_RS02725at 569.950 kb on - strand, within AZOBR_RS02725at 569.950 kb on - strand, within AZOBR_RS02725at 570.866 kb on + strandat 570.866 kb on + strandat 570.867 kb on - strandat 570.867 kb on - strandat 570.989 kb on + strand, within AZOBR_RS02730at 570.989 kb on + strand, within AZOBR_RS02730at 570.989 kb on + strand, within AZOBR_RS02730at 570.990 kb on - strand, within AZOBR_RS02730at 570.990 kb on - strand, within AZOBR_RS02730at 570.990 kb on - strand, within AZOBR_RS02730at 571.019 kb on + strand, within AZOBR_RS02730at 571.019 kb on + strand, within AZOBR_RS02730at 571.020 kb on - strand, within AZOBR_RS02730at 571.020 kb on - strand, within AZOBR_RS02730at 571.020 kb on - strand, within AZOBR_RS02730at 571.020 kb on - strand, within AZOBR_RS02730at 571.020 kb on - strand, within AZOBR_RS02730at 571.020 kb on - strand, within AZOBR_RS02730at 571.085 kb on + strand, within AZOBR_RS02730at 571.085 kb on + strand, within AZOBR_RS02730at 571.085 kb on + strand, within AZOBR_RS02730at 571.085 kb on + strand, within AZOBR_RS02730at 571.085 kb on + strand, within AZOBR_RS02730at 571.086 kb on - strand, within AZOBR_RS02730at 571.178 kb on + strand, within AZOBR_RS02730at 571.178 kb on + strand, within AZOBR_RS02730at 571.178 kb on + strand, within AZOBR_RS02730at 571.179 kb on - strand, within AZOBR_RS02730at 571.187 kb on + strand, within AZOBR_RS02730at 571.427 kb on + strand, within AZOBR_RS02730at 571.427 kb on + strand, within AZOBR_RS02730at 571.428 kb on - strand, within AZOBR_RS02730at 571.428 kb on - strand, within AZOBR_RS02730

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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568,552 + AZOBR_RS02715 0.69 -0.3
568,552 + AZOBR_RS02715 0.69 -1.7
568,552 + AZOBR_RS02715 0.69 +0.0
568,553 - AZOBR_RS02715 0.69 -3.1
568,553 - AZOBR_RS02715 0.69 -1.9
568,796 - -2.1
568,867 + -0.2
568,868 - -1.1
569,107 + AZOBR_RS02720 0.26 -0.5
569,107 + AZOBR_RS02720 0.26 -1.6
569,144 - AZOBR_RS02720 0.33 -0.4
569,144 - AZOBR_RS02720 0.33 +0.5
569,144 - AZOBR_RS02720 0.33 -3.3
569,224 + AZOBR_RS02720 0.49 +1.0
569,392 + AZOBR_RS02720 0.82 +1.1
569,392 + AZOBR_RS02720 0.82 -0.1
569,949 + AZOBR_RS02725 0.37 +1.0
569,949 + AZOBR_RS02725 0.37 +0.4
569,949 + AZOBR_RS02725 0.37 +0.6
569,950 - AZOBR_RS02725 0.37 +1.6
569,950 - AZOBR_RS02725 0.37 -0.6
570,866 + +0.5
570,866 + +2.5
570,867 - +1.2
570,867 - +0.2
570,989 + AZOBR_RS02730 0.21 -0.4
570,989 + AZOBR_RS02730 0.21 -0.2
570,989 + AZOBR_RS02730 0.21 +0.2
570,990 - AZOBR_RS02730 0.21 -0.4
570,990 - AZOBR_RS02730 0.21 -0.6
570,990 - AZOBR_RS02730 0.21 +0.7
571,019 + AZOBR_RS02730 0.25 +0.0
571,019 + AZOBR_RS02730 0.25 -2.0
571,020 - AZOBR_RS02730 0.25 +0.1
571,020 - AZOBR_RS02730 0.25 -0.5
571,020 - AZOBR_RS02730 0.25 +1.3
571,020 - AZOBR_RS02730 0.25 +0.1
571,020 - AZOBR_RS02730 0.25 -1.1
571,020 - AZOBR_RS02730 0.25 -0.0
571,085 + AZOBR_RS02730 0.32 -2.4
571,085 + AZOBR_RS02730 0.32 +2.1
571,085 + AZOBR_RS02730 0.32 +0.0
571,085 + AZOBR_RS02730 0.32 -0.5
571,085 + AZOBR_RS02730 0.32 +0.3
571,086 - AZOBR_RS02730 0.32 -1.5
571,178 + AZOBR_RS02730 0.43 +1.0
571,178 + AZOBR_RS02730 0.43 +0.5
571,178 + AZOBR_RS02730 0.43 -0.1
571,179 - AZOBR_RS02730 0.43 +0.5
571,187 + AZOBR_RS02730 0.44 +0.9
571,427 + AZOBR_RS02730 0.71 +0.4
571,427 + AZOBR_RS02730 0.71 +0.6
571,428 - AZOBR_RS02730 0.71 +0.8
571,428 - AZOBR_RS02730 0.71 +0.1

Or see this region's nucleotide sequence