Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02150 and AZOBR_RS02155 are separated by 98 nucleotides AZOBR_RS02155 and AZOBR_RS02160 overlap by 4 nucleotides AZOBR_RS02160 and AZOBR_RS02165 are separated by 33 nucleotides
AZOBR_RS02150: AZOBR_RS02150 - ABC transporter substrate-binding protein, at 442,912 to 444,117
_RS02150
AZOBR_RS02155: AZOBR_RS02155 - 16S rRNA methyltransferase, at 444,216 to 445,037
_RS02155
AZOBR_RS02160: AZOBR_RS02160 - hypothetical protein, at 445,034 to 445,402
_RS02160
AZOBR_RS02165: AZOBR_RS02165 - hypothetical protein, at 445,436 to 446,269
_RS02165
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1
2 at 444.173 kb on + strand at 444.174 kb on - strand at 444.194 kb on + strand at 444.195 kb on - strand at 444.195 kb on - strand at 444.195 kb on - strand at 444.214 kb on - strand at 444.214 kb on - strand at 444.214 kb on - strand at 444.364 kb on - strand, within AZOBR_RS02155 at 444.364 kb on - strand, within AZOBR_RS02155 at 444.364 kb on - strand, within AZOBR_RS02155 at 444.364 kb on - strand, within AZOBR_RS02155 at 444.478 kb on - strand, within AZOBR_RS02155 at 444.817 kb on - strand, within AZOBR_RS02155 at 444.996 kb on + strand at 444.996 kb on + strand at 445.295 kb on + strand, within AZOBR_RS02160 at 445.295 kb on + strand at 445.295 kb on + strand, within AZOBR_RS02160 at 445.295 kb on + strand, within AZOBR_RS02160 at 445.296 kb on - strand at 445.325 kb on + strand, within AZOBR_RS02160 at 445.326 kb on - strand, within AZOBR_RS02160 at 445.683 kb on - strand, within AZOBR_RS02165 at 445.704 kb on - strand, within AZOBR_RS02165 at 445.704 kb on - strand, within AZOBR_RS02165 at 445.781 kb on + strand, within AZOBR_RS02165 at 445.781 kb on + strand, within AZOBR_RS02165 at 445.781 kb on + strand, within AZOBR_RS02165 at 445.782 kb on - strand, within AZOBR_RS02165 at 445.782 kb on - strand, within AZOBR_RS02165
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 444,173 + -1.2 444,174 - -0.2 444,194 + -1.6 444,195 - -1.2 444,195 - -1.2 444,195 - -1.7 444,214 - +0.6 444,214 - -0.7 444,214 - -0.9 444,364 - AZOBR_RS02155 0.18 -1.2 444,364 - AZOBR_RS02155 0.18 +0.3 444,364 - AZOBR_RS02155 0.18 -1.1 444,364 - AZOBR_RS02155 0.18 -0.9 444,478 - AZOBR_RS02155 0.32 -1.6 444,817 - AZOBR_RS02155 0.73 -0.5 444,996 + -1.0 444,996 + -0.4 445,295 + AZOBR_RS02160 0.71 +0.5 445,295 + +2.6 445,295 + AZOBR_RS02160 0.71 -0.8 445,295 + AZOBR_RS02160 0.71 -0.6 445,296 - -0.3 445,325 + AZOBR_RS02160 0.79 -2.2 445,326 - AZOBR_RS02160 0.79 -0.6 445,683 - AZOBR_RS02165 0.30 -0.4 445,704 - AZOBR_RS02165 0.32 +0.4 445,704 - AZOBR_RS02165 0.32 -0.9 445,781 + AZOBR_RS02165 0.41 +1.0 445,781 + AZOBR_RS02165 0.41 +1.1 445,781 + AZOBR_RS02165 0.41 +1.6 445,782 - AZOBR_RS02165 0.41 -0.6 445,782 - AZOBR_RS02165 0.41 +0.3
Or see this region's nucleotide sequence