Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00205

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00200 and AZOBR_RS00205 are separated by 70 nucleotidesAZOBR_RS00205 and AZOBR_RS00210 are separated by 346 nucleotides AZOBR_RS00200: AZOBR_RS00200 - hypothetical protein, at 32,645 to 34,279 _RS00200 AZOBR_RS00205: AZOBR_RS00205 - hypothetical protein, at 34,350 to 34,592 _RS00205 AZOBR_RS00210: AZOBR_RS00210 - hypothetical protein, at 34,939 to 35,442 _RS00210 Position (kb) 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 33.398 kb on + strand, within AZOBR_RS00200at 33.398 kb on + strand, within AZOBR_RS00200at 33.461 kb on + strand, within AZOBR_RS00200at 33.842 kb on + strand, within AZOBR_RS00200at 33.842 kb on + strand, within AZOBR_RS00200at 34.114 kb on + strand, within AZOBR_RS00200at 34.114 kb on + strand, within AZOBR_RS00200at 34.114 kb on + strand, within AZOBR_RS00200at 34.133 kb on + strandat 34.133 kb on + strandat 34.134 kb on - strandat 34.184 kb on + strandat 34.184 kb on + strandat 34.185 kb on - strandat 34.185 kb on - strandat 34.930 kb on + strandat 34.930 kb on + strandat 34.931 kb on - strandat 34.931 kb on - strandat 35.074 kb on + strand, within AZOBR_RS00210at 35.074 kb on + strand, within AZOBR_RS00210at 35.137 kb on + strand, within AZOBR_RS00210at 35.138 kb on - strand, within AZOBR_RS00210at 35.138 kb on - strand, within AZOBR_RS00210at 35.138 kb on - strand, within AZOBR_RS00210at 35.272 kb on + strand, within AZOBR_RS00210at 35.273 kb on - strand, within AZOBR_RS00210at 35.273 kb on - strand, within AZOBR_RS00210at 35.273 kb on - strand, within AZOBR_RS00210

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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33,398 + AZOBR_RS00200 0.46 -0.3
33,398 + AZOBR_RS00200 0.46 -1.5
33,461 + AZOBR_RS00200 0.50 -0.3
33,842 + AZOBR_RS00200 0.73 -0.4
33,842 + AZOBR_RS00200 0.73 +0.1
34,114 + AZOBR_RS00200 0.90 +0.4
34,114 + AZOBR_RS00200 0.90 -0.0
34,114 + AZOBR_RS00200 0.90 +0.1
34,133 + -0.3
34,133 + +0.1
34,134 - -1.2
34,184 + +0.7
34,184 + +0.5
34,185 - -0.5
34,185 - +0.5
34,930 + -0.2
34,930 + +0.6
34,931 - +0.2
34,931 - -0.5
35,074 + AZOBR_RS00210 0.27 -1.6
35,074 + AZOBR_RS00210 0.27 +2.2
35,137 + AZOBR_RS00210 0.39 +1.2
35,138 - AZOBR_RS00210 0.39 +0.2
35,138 - AZOBR_RS00210 0.39 +0.4
35,138 - AZOBR_RS00210 0.39 -0.6
35,272 + AZOBR_RS00210 0.66 +0.5
35,273 - AZOBR_RS00210 0.66 -1.0
35,273 - AZOBR_RS00210 0.66 +0.8
35,273 - AZOBR_RS00210 0.66 -2.7

Or see this region's nucleotide sequence