Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22675

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22670 and ABZR87_RS22675 are separated by 587 nucleotidesABZR87_RS22675 and ABZR87_RS22680 are separated by 109 nucleotides ABZR87_RS22670: ABZR87_RS22670 - response regulator transcription factor, at 1,445,034 to 1,446,044 _RS22670 ABZR87_RS22675: ABZR87_RS22675 - hypothetical protein, at 1,446,632 to 1,446,874 _RS22675 ABZR87_RS22680: ABZR87_RS22680 - NAD-dependent epimerase/dehydratase family protein, at 1,446,984 to 1,447,967 _RS22680 Position (kb) 1446 1447Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1445.725 kb on + strand, within ABZR87_RS22670at 1445.725 kb on + strand, within ABZR87_RS22670at 1445.725 kb on + strand, within ABZR87_RS22670at 1445.726 kb on - strand, within ABZR87_RS22670at 1445.726 kb on - strand, within ABZR87_RS22670at 1445.726 kb on - strand, within ABZR87_RS22670at 1446.249 kb on + strandat 1446.249 kb on + strandat 1446.249 kb on + strandat 1446.249 kb on + strandat 1446.249 kb on + strandat 1446.249 kb on + strandat 1446.249 kb on + strandat 1446.249 kb on + strandat 1446.294 kb on + strandat 1446.294 kb on + strandat 1446.294 kb on + strandat 1446.294 kb on + strandat 1446.294 kb on + strandat 1446.294 kb on + strandat 1446.295 kb on - strandat 1446.295 kb on - strandat 1446.295 kb on - strandat 1446.295 kb on - strandat 1446.295 kb on - strandat 1446.314 kb on + strandat 1446.314 kb on + strandat 1446.314 kb on + strandat 1446.314 kb on + strandat 1446.314 kb on + strandat 1446.315 kb on - strandat 1446.315 kb on - strandat 1446.358 kb on - strandat 1446.543 kb on + strandat 1446.544 kb on - strandat 1446.544 kb on - strandat 1446.544 kb on - strandat 1446.562 kb on + strandat 1446.589 kb on + strandat 1446.589 kb on + strandat 1446.589 kb on + strandat 1446.589 kb on + strandat 1446.590 kb on - strandat 1446.590 kb on - strandat 1446.590 kb on - strandat 1446.590 kb on - strandat 1446.590 kb on - strandat 1446.668 kb on - strand, within ABZR87_RS22675at 1446.668 kb on - strand, within ABZR87_RS22675at 1446.707 kb on - strand, within ABZR87_RS22675at 1446.707 kb on - strand, within ABZR87_RS22675at 1446.707 kb on - strand, within ABZR87_RS22675at 1446.707 kb on - strand, within ABZR87_RS22675at 1446.707 kb on - strand, within ABZR87_RS22675at 1446.758 kb on - strand, within ABZR87_RS22675at 1446.962 kb on + strandat 1446.962 kb on + strandat 1446.963 kb on - strandat 1446.963 kb on - strandat 1446.986 kb on - strandat 1447.100 kb on - strand, within ABZR87_RS22680at 1447.144 kb on + strand, within ABZR87_RS22680at 1447.203 kb on - strand, within ABZR87_RS22680at 1447.203 kb on - strand, within ABZR87_RS22680at 1447.225 kb on + strand, within ABZR87_RS22680at 1447.225 kb on + strand, within ABZR87_RS22680at 1447.225 kb on + strand, within ABZR87_RS22680at 1447.226 kb on - strand, within ABZR87_RS22680at 1447.226 kb on - strand, within ABZR87_RS22680at 1447.226 kb on - strand, within ABZR87_RS22680at 1447.241 kb on + strand, within ABZR87_RS22680at 1447.241 kb on + strand, within ABZR87_RS22680at 1447.241 kb on + strand, within ABZR87_RS22680at 1447.241 kb on + strand, within ABZR87_RS22680at 1447.242 kb on - strand, within ABZR87_RS22680at 1447.242 kb on - strand, within ABZR87_RS22680at 1447.242 kb on - strand, within ABZR87_RS22680at 1447.298 kb on + strand, within ABZR87_RS22680at 1447.298 kb on + strand, within ABZR87_RS22680at 1447.298 kb on + strand, within ABZR87_RS22680at 1447.298 kb on + strand, within ABZR87_RS22680at 1447.298 kb on + strand, within ABZR87_RS22680at 1447.298 kb on + strand, within ABZR87_RS22680at 1447.299 kb on - strand, within ABZR87_RS22680at 1447.299 kb on - strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.300 kb on + strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.301 kb on - strand, within ABZR87_RS22680at 1447.340 kb on + strand, within ABZR87_RS22680at 1447.340 kb on + strand, within ABZR87_RS22680at 1447.340 kb on + strand, within ABZR87_RS22680at 1447.340 kb on + strand, within ABZR87_RS22680at 1447.340 kb on + strand, within ABZR87_RS22680at 1447.341 kb on - strand, within ABZR87_RS22680at 1447.341 kb on - strand, within ABZR87_RS22680at 1447.341 kb on - strand, within ABZR87_RS22680at 1447.341 kb on - strand, within ABZR87_RS22680at 1447.341 kb on - strand, within ABZR87_RS22680at 1447.341 kb on - strand, within ABZR87_RS22680at 1447.342 kb on + strand, within ABZR87_RS22680at 1447.342 kb on + strand, within ABZR87_RS22680at 1447.343 kb on - strand, within ABZR87_RS22680at 1447.384 kb on + strand, within ABZR87_RS22680at 1447.385 kb on - strand, within ABZR87_RS22680at 1447.385 kb on - strand, within ABZR87_RS22680at 1447.385 kb on - strand, within ABZR87_RS22680at 1447.417 kb on + strand, within ABZR87_RS22680at 1447.436 kb on - strand, within ABZR87_RS22680at 1447.436 kb on - strand, within ABZR87_RS22680at 1447.474 kb on + strand, within ABZR87_RS22680at 1447.516 kb on + strand, within ABZR87_RS22680at 1447.517 kb on - strand, within ABZR87_RS22680at 1447.661 kb on + strand, within ABZR87_RS22680at 1447.661 kb on + strand, within ABZR87_RS22680at 1447.661 kb on + strand, within ABZR87_RS22680at 1447.661 kb on + strand, within ABZR87_RS22680at 1447.662 kb on - strand, within ABZR87_RS22680at 1447.662 kb on - strand, within ABZR87_RS22680at 1447.726 kb on + strand, within ABZR87_RS22680at 1447.726 kb on + strand, within ABZR87_RS22680at 1447.726 kb on + strand, within ABZR87_RS22680at 1447.727 kb on - strand, within ABZR87_RS22680at 1447.727 kb on - strand, within ABZR87_RS22680at 1447.727 kb on - strand, within ABZR87_RS22680at 1447.727 kb on - strand, within ABZR87_RS22680at 1447.737 kb on - strand, within ABZR87_RS22680at 1447.737 kb on - strand, within ABZR87_RS22680

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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1,445,725 + ABZR87_RS22670 0.68 +0.0
1,445,725 + ABZR87_RS22670 0.68 +0.0
1,445,725 + ABZR87_RS22670 0.68 -0.3
1,445,726 - ABZR87_RS22670 0.68 -1.3
1,445,726 - ABZR87_RS22670 0.68 -1.9
1,445,726 - ABZR87_RS22670 0.68 -0.7
1,446,249 + +0.9
1,446,249 + +1.2
1,446,249 + -0.4
1,446,249 + +1.2
1,446,249 + +0.7
1,446,249 + -1.8
1,446,249 + -0.6
1,446,249 + -0.6
1,446,294 + +0.0
1,446,294 + +0.1
1,446,294 + +0.6
1,446,294 + -0.4
1,446,294 + +0.4
1,446,294 + +0.6
1,446,295 - -2.3
1,446,295 - -2.3
1,446,295 - -0.3
1,446,295 - +0.6
1,446,295 - -1.4
1,446,314 + +0.4
1,446,314 + -0.1
1,446,314 + +0.4
1,446,314 + +1.2
1,446,314 + +0.6
1,446,315 - -1.6
1,446,315 - -2.1
1,446,358 - +0.2
1,446,543 + +0.0
1,446,544 - +0.2
1,446,544 - -1.0
1,446,544 - -0.1
1,446,562 + +1.3
1,446,589 + +0.1
1,446,589 + +1.0
1,446,589 + -0.1
1,446,589 + +0.7
1,446,590 - -0.5
1,446,590 - -0.7
1,446,590 - +1.0
1,446,590 - -0.2
1,446,590 - +0.7
1,446,668 - ABZR87_RS22675 0.15 -0.5
1,446,668 - ABZR87_RS22675 0.15 -0.6
1,446,707 - ABZR87_RS22675 0.31 -0.6
1,446,707 - ABZR87_RS22675 0.31 +0.1
1,446,707 - ABZR87_RS22675 0.31 -0.2
1,446,707 - ABZR87_RS22675 0.31 +0.1
1,446,707 - ABZR87_RS22675 0.31 +0.4
1,446,758 - ABZR87_RS22675 0.52 +0.1
1,446,962 + +0.8
1,446,962 + -0.9
1,446,963 - -1.9
1,446,963 - -1.4
1,446,986 - +0.3
1,447,100 - ABZR87_RS22680 0.12 -1.0
1,447,144 + ABZR87_RS22680 0.16 +0.4
1,447,203 - ABZR87_RS22680 0.22 +0.1
1,447,203 - ABZR87_RS22680 0.22 -0.6
1,447,225 + ABZR87_RS22680 0.24 +0.5
1,447,225 + ABZR87_RS22680 0.24 -0.6
1,447,225 + ABZR87_RS22680 0.24 +1.5
1,447,226 - ABZR87_RS22680 0.25 -0.5
1,447,226 - ABZR87_RS22680 0.25 -0.4
1,447,226 - ABZR87_RS22680 0.25 -2.4
1,447,241 + ABZR87_RS22680 0.26 +2.0
1,447,241 + ABZR87_RS22680 0.26 -0.1
1,447,241 + ABZR87_RS22680 0.26 +0.8
1,447,241 + ABZR87_RS22680 0.26 -2.1
1,447,242 - ABZR87_RS22680 0.26 -1.0
1,447,242 - ABZR87_RS22680 0.26 +0.4
1,447,242 - ABZR87_RS22680 0.26 -0.6
1,447,298 + ABZR87_RS22680 0.32 +1.3
1,447,298 + ABZR87_RS22680 0.32 +0.0
1,447,298 + ABZR87_RS22680 0.32 -1.6
1,447,298 + ABZR87_RS22680 0.32 +1.0
1,447,298 + ABZR87_RS22680 0.32 +1.3
1,447,298 + ABZR87_RS22680 0.32 -0.1
1,447,299 - ABZR87_RS22680 0.32 -1.0
1,447,299 - ABZR87_RS22680 0.32 -4.7
1,447,300 + ABZR87_RS22680 0.32 +1.2
1,447,300 + ABZR87_RS22680 0.32 +1.3
1,447,300 + ABZR87_RS22680 0.32 +0.5
1,447,300 + ABZR87_RS22680 0.32 -0.5
1,447,300 + ABZR87_RS22680 0.32 -0.2
1,447,300 + ABZR87_RS22680 0.32 -0.2
1,447,300 + ABZR87_RS22680 0.32 +1.3
1,447,300 + ABZR87_RS22680 0.32 +1.9
1,447,300 + ABZR87_RS22680 0.32 -1.1
1,447,300 + ABZR87_RS22680 0.32 +0.6
1,447,300 + ABZR87_RS22680 0.32 -0.7
1,447,300 + ABZR87_RS22680 0.32 +0.4
1,447,300 + ABZR87_RS22680 0.32 -0.4
1,447,300 + ABZR87_RS22680 0.32 +0.8
1,447,300 + ABZR87_RS22680 0.32 +0.9
1,447,300 + ABZR87_RS22680 0.32 +0.3
1,447,300 + ABZR87_RS22680 0.32 +1.6
1,447,301 - ABZR87_RS22680 0.32 +1.2
1,447,301 - ABZR87_RS22680 0.32 -2.3
1,447,301 - ABZR87_RS22680 0.32 +0.3
1,447,301 - ABZR87_RS22680 0.32 +0.3
1,447,301 - ABZR87_RS22680 0.32 -1.6
1,447,301 - ABZR87_RS22680 0.32 -1.2
1,447,301 - ABZR87_RS22680 0.32 -2.8
1,447,301 - ABZR87_RS22680 0.32 +0.1
1,447,301 - ABZR87_RS22680 0.32 -1.1
1,447,301 - ABZR87_RS22680 0.32 -1.3
1,447,301 - ABZR87_RS22680 0.32 -0.0
1,447,301 - ABZR87_RS22680 0.32 +0.0
1,447,301 - ABZR87_RS22680 0.32 +1.4
1,447,301 - ABZR87_RS22680 0.32 -0.3
1,447,301 - ABZR87_RS22680 0.32 -0.3
1,447,301 - ABZR87_RS22680 0.32 +0.9
1,447,301 - ABZR87_RS22680 0.32 -2.5
1,447,301 - ABZR87_RS22680 0.32 +0.3
1,447,301 - ABZR87_RS22680 0.32 +0.7
1,447,301 - ABZR87_RS22680 0.32 -0.7
1,447,301 - ABZR87_RS22680 0.32 -0.4
1,447,301 - ABZR87_RS22680 0.32 +1.0
1,447,301 - ABZR87_RS22680 0.32 -1.1
1,447,301 - ABZR87_RS22680 0.32 +0.4
1,447,301 - ABZR87_RS22680 0.32 -0.7
1,447,301 - ABZR87_RS22680 0.32 +0.4
1,447,301 - ABZR87_RS22680 0.32 -0.4
1,447,301 - ABZR87_RS22680 0.32 -0.6
1,447,301 - ABZR87_RS22680 0.32 +0.6
1,447,340 + ABZR87_RS22680 0.36 +1.2
1,447,340 + ABZR87_RS22680 0.36 -1.4
1,447,340 + ABZR87_RS22680 0.36 +0.2
1,447,340 + ABZR87_RS22680 0.36 +0.3
1,447,340 + ABZR87_RS22680 0.36 +0.5
1,447,341 - ABZR87_RS22680 0.36 +0.9
1,447,341 - ABZR87_RS22680 0.36 +0.6
1,447,341 - ABZR87_RS22680 0.36 -2.6
1,447,341 - ABZR87_RS22680 0.36 -0.8
1,447,341 - ABZR87_RS22680 0.36 -0.9
1,447,341 - ABZR87_RS22680 0.36 +1.2
1,447,342 + ABZR87_RS22680 0.36 -1.2
1,447,342 + ABZR87_RS22680 0.36 +0.6
1,447,343 - ABZR87_RS22680 0.36 +0.4
1,447,384 + ABZR87_RS22680 0.41 +1.1
1,447,385 - ABZR87_RS22680 0.41 -0.5
1,447,385 - ABZR87_RS22680 0.41 -0.4
1,447,385 - ABZR87_RS22680 0.41 -0.3
1,447,417 + ABZR87_RS22680 0.44 +0.8
1,447,436 - ABZR87_RS22680 0.46 -3.1
1,447,436 - ABZR87_RS22680 0.46 -1.0
1,447,474 + ABZR87_RS22680 0.50 -1.0
1,447,516 + ABZR87_RS22680 0.54 +0.3
1,447,517 - ABZR87_RS22680 0.54 -0.1
1,447,661 + ABZR87_RS22680 0.69 -0.9
1,447,661 + ABZR87_RS22680 0.69 +1.3
1,447,661 + ABZR87_RS22680 0.69 +0.3
1,447,661 + ABZR87_RS22680 0.69 +0.4
1,447,662 - ABZR87_RS22680 0.69 +0.3
1,447,662 - ABZR87_RS22680 0.69 +0.7
1,447,726 + ABZR87_RS22680 0.75 +0.3
1,447,726 + ABZR87_RS22680 0.75 -0.7
1,447,726 + ABZR87_RS22680 0.75 -0.1
1,447,727 - ABZR87_RS22680 0.76 -0.1
1,447,727 - ABZR87_RS22680 0.76 -1.2
1,447,727 - ABZR87_RS22680 0.76 -0.8
1,447,727 - ABZR87_RS22680 0.76 +0.2
1,447,737 - ABZR87_RS22680 0.77 -1.1
1,447,737 - ABZR87_RS22680 0.77 -0.3

Or see this region's nucleotide sequence