Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22000

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21995 and ABZR87_RS22000 are separated by 34 nucleotidesABZR87_RS22000 and ABZR87_RS22005 overlap by 4 nucleotidesABZR87_RS22005 and ABZR87_RS22010 are separated by 32 nucleotidesABZR87_RS22010 and ABZR87_RS22015 overlap by 1 nucleotides ABZR87_RS21995: ABZR87_RS21995 - phage tail tape measure protein, at 1,306,423 to 1,308,375 _RS21995 ABZR87_RS22000: ABZR87_RS22000 - hypothetical protein, at 1,308,410 to 1,308,814 _RS22000 ABZR87_RS22005: ABZR87_RS22005 - hypothetical protein, at 1,308,811 to 1,308,945 _RS22005 ABZR87_RS22010: ABZR87_RS22010 - hypothetical protein, at 1,308,978 to 1,309,337 _RS22010 ABZR87_RS22015: ABZR87_RS22015 - hypothetical protein, at 1,309,337 to 1,309,768 _RS22015 Position (kb) 1308 1309Strain fitness (log2 ratio) -1 0 1at 1307.459 kb on + strand, within ABZR87_RS21995at 1307.459 kb on + strand, within ABZR87_RS21995at 1307.604 kb on + strand, within ABZR87_RS21995at 1307.604 kb on + strand, within ABZR87_RS21995at 1308.136 kb on + strand, within ABZR87_RS21995at 1308.137 kb on - strand, within ABZR87_RS21995at 1308.359 kb on + strandat 1308.360 kb on - strandat 1308.375 kb on + strandat 1308.375 kb on + strandat 1308.700 kb on + strand, within ABZR87_RS22000at 1308.700 kb on + strand, within ABZR87_RS22000at 1308.701 kb on - strand, within ABZR87_RS22000at 1309.078 kb on + strand, within ABZR87_RS22010at 1309.079 kb on - strand, within ABZR87_RS22010at 1309.171 kb on + strand, within ABZR87_RS22010at 1309.172 kb on - strand, within ABZR87_RS22010at 1309.172 kb on - strand, within ABZR87_RS22010at 1309.172 kb on - strand, within ABZR87_RS22010at 1309.522 kb on - strand, within ABZR87_RS22015at 1309.548 kb on + strand, within ABZR87_RS22015at 1309.659 kb on - strand, within ABZR87_RS22015at 1309.735 kb on - strandat 1309.735 kb on - strandat 1309.768 kb on + strandat 1309.768 kb on + strandat 1309.769 kb on - strandat 1309.769 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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1,307,459 + ABZR87_RS21995 0.53 -0.3
1,307,459 + ABZR87_RS21995 0.53 +0.9
1,307,604 + ABZR87_RS21995 0.60 +0.0
1,307,604 + ABZR87_RS21995 0.60 +0.6
1,308,136 + ABZR87_RS21995 0.88 +0.7
1,308,137 - ABZR87_RS21995 0.88 +0.2
1,308,359 + +0.9
1,308,360 - -0.6
1,308,375 + +0.9
1,308,375 + +1.1
1,308,700 + ABZR87_RS22000 0.72 -0.8
1,308,700 + ABZR87_RS22000 0.72 -1.2
1,308,701 - ABZR87_RS22000 0.72 -0.5
1,309,078 + ABZR87_RS22010 0.28 -0.0
1,309,079 - ABZR87_RS22010 0.28 -0.4
1,309,171 + ABZR87_RS22010 0.54 +0.8
1,309,172 - ABZR87_RS22010 0.54 +0.4
1,309,172 - ABZR87_RS22010 0.54 -0.7
1,309,172 - ABZR87_RS22010 0.54 +0.0
1,309,522 - ABZR87_RS22015 0.43 +0.4
1,309,548 + ABZR87_RS22015 0.49 +0.4
1,309,659 - ABZR87_RS22015 0.75 +0.7
1,309,735 - -0.0
1,309,735 - +1.2
1,309,768 + +0.9
1,309,768 + +1.0
1,309,769 - -0.7
1,309,769 - -0.6

Or see this region's nucleotide sequence