Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19025

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19020 and ABZR87_RS19025 overlap by 4 nucleotidesABZR87_RS19025 and ABZR87_RS19030 are separated by 57 nucleotides ABZR87_RS19020: ABZR87_RS19020 - multidrug efflux RND transporter permease subunit, at 625,030 to 628,131 _RS19020 ABZR87_RS19025: ABZR87_RS19025 - MdtB/MuxB family multidrug efflux RND transporter permease subunit, at 628,128 to 631,262 _RS19025 ABZR87_RS19030: ABZR87_RS19030 - MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit, at 631,320 to 632,717 _RS19030 Position (kb) 628 629 630 631 632Strain fitness (log2 ratio) -2 -1 0 1 2 3at 627.279 kb on + strand, within ABZR87_RS19020at 627.410 kb on + strand, within ABZR87_RS19020at 627.410 kb on + strand, within ABZR87_RS19020at 627.410 kb on + strand, within ABZR87_RS19020at 627.443 kb on + strand, within ABZR87_RS19020at 627.443 kb on + strand, within ABZR87_RS19020at 627.444 kb on - strand, within ABZR87_RS19020at 627.444 kb on - strand, within ABZR87_RS19020at 627.444 kb on - strand, within ABZR87_RS19020at 627.543 kb on - strand, within ABZR87_RS19020at 627.543 kb on - strand, within ABZR87_RS19020at 627.668 kb on + strand, within ABZR87_RS19020at 627.668 kb on + strand, within ABZR87_RS19020at 627.669 kb on - strand, within ABZR87_RS19020at 627.669 kb on - strand, within ABZR87_RS19020at 627.669 kb on - strand, within ABZR87_RS19020at 627.669 kb on - strand, within ABZR87_RS19020at 627.669 kb on - strand, within ABZR87_RS19020at 627.759 kb on + strand, within ABZR87_RS19020at 627.759 kb on + strand, within ABZR87_RS19020at 627.759 kb on + strand, within ABZR87_RS19020at 628.234 kb on + strandat 628.234 kb on + strandat 628.235 kb on - strandat 628.235 kb on - strandat 628.417 kb on + strandat 628.417 kb on + strandat 628.418 kb on - strandat 628.418 kb on - strandat 628.418 kb on - strandat 628.418 kb on - strandat 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.657 kb on + strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 628.658 kb on - strand, within ABZR87_RS19025at 629.056 kb on + strand, within ABZR87_RS19025at 629.057 kb on - strand, within ABZR87_RS19025at 629.066 kb on - strand, within ABZR87_RS19025at 629.101 kb on + strand, within ABZR87_RS19025at 629.134 kb on + strand, within ABZR87_RS19025at 629.135 kb on - strand, within ABZR87_RS19025at 629.266 kb on + strand, within ABZR87_RS19025at 629.320 kb on + strand, within ABZR87_RS19025at 629.320 kb on + strand, within ABZR87_RS19025at 629.320 kb on + strand, within ABZR87_RS19025at 629.320 kb on + strand, within ABZR87_RS19025at 629.321 kb on - strand, within ABZR87_RS19025at 629.321 kb on - strand, within ABZR87_RS19025at 629.321 kb on - strand, within ABZR87_RS19025at 629.321 kb on - strand, within ABZR87_RS19025at 629.629 kb on + strand, within ABZR87_RS19025at 629.629 kb on + strand, within ABZR87_RS19025at 629.629 kb on + strand, within ABZR87_RS19025at 629.629 kb on + strand, within ABZR87_RS19025at 629.629 kb on + strand, within ABZR87_RS19025at 629.629 kb on + strand, within ABZR87_RS19025at 629.758 kb on + strand, within ABZR87_RS19025at 629.758 kb on + strand, within ABZR87_RS19025at 629.758 kb on + strand, within ABZR87_RS19025at 629.759 kb on - strand, within ABZR87_RS19025at 629.759 kb on - strand, within ABZR87_RS19025at 629.759 kb on - strand, within ABZR87_RS19025at 629.759 kb on - strand, within ABZR87_RS19025at 630.025 kb on + strand, within ABZR87_RS19025at 630.026 kb on - strand, within ABZR87_RS19025at 630.026 kb on - strand, within ABZR87_RS19025at 630.130 kb on + strand, within ABZR87_RS19025at 630.130 kb on + strand, within ABZR87_RS19025at 630.130 kb on + strand, within ABZR87_RS19025at 630.130 kb on + strand, within ABZR87_RS19025at 630.131 kb on - strand, within ABZR87_RS19025at 630.520 kb on + strand, within ABZR87_RS19025at 630.520 kb on + strand, within ABZR87_RS19025at 630.692 kb on + strand, within ABZR87_RS19025at 630.692 kb on + strand, within ABZR87_RS19025at 630.693 kb on - strand, within ABZR87_RS19025at 630.877 kb on + strand, within ABZR87_RS19025at 630.877 kb on + strand, within ABZR87_RS19025at 630.878 kb on - strand, within ABZR87_RS19025at 630.878 kb on - strand, within ABZR87_RS19025at 631.112 kb on - strandat 631.113 kb on + strandat 631.114 kb on - strandat 631.114 kb on - strandat 631.321 kb on + strandat 631.322 kb on - strandat 631.600 kb on + strand, within ABZR87_RS19030at 631.600 kb on + strand, within ABZR87_RS19030at 631.601 kb on - strand, within ABZR87_RS19030at 631.667 kb on + strand, within ABZR87_RS19030at 631.903 kb on + strand, within ABZR87_RS19030at 631.903 kb on + strand, within ABZR87_RS19030at 631.903 kb on + strand, within ABZR87_RS19030at 631.904 kb on - strand, within ABZR87_RS19030at 631.904 kb on - strand, within ABZR87_RS19030at 631.904 kb on - strand, within ABZR87_RS19030at 631.904 kb on - strand, within ABZR87_RS19030at 631.935 kb on - strand, within ABZR87_RS19030at 631.935 kb on - strand, within ABZR87_RS19030at 632.032 kb on + strand, within ABZR87_RS19030at 632.033 kb on - strand, within ABZR87_RS19030at 632.248 kb on + strand, within ABZR87_RS19030at 632.248 kb on + strand, within ABZR87_RS19030at 632.248 kb on + strand, within ABZR87_RS19030at 632.248 kb on + strand, within ABZR87_RS19030at 632.249 kb on - strand, within ABZR87_RS19030at 632.249 kb on - strand, within ABZR87_RS19030at 632.249 kb on - strand, within ABZR87_RS19030at 632.249 kb on - strand, within ABZR87_RS19030

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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627,279 + ABZR87_RS19020 0.73 +1.7
627,410 + ABZR87_RS19020 0.77 +1.4
627,410 + ABZR87_RS19020 0.77 +0.2
627,410 + ABZR87_RS19020 0.77 +0.1
627,443 + ABZR87_RS19020 0.78 +1.4
627,443 + ABZR87_RS19020 0.78 +0.5
627,444 - ABZR87_RS19020 0.78 +2.3
627,444 - ABZR87_RS19020 0.78 +2.6
627,444 - ABZR87_RS19020 0.78 +1.9
627,543 - ABZR87_RS19020 0.81 +1.5
627,543 - ABZR87_RS19020 0.81 +2.0
627,668 + ABZR87_RS19020 0.85 +1.4
627,668 + ABZR87_RS19020 0.85 +2.1
627,669 - ABZR87_RS19020 0.85 +1.6
627,669 - ABZR87_RS19020 0.85 +1.8
627,669 - ABZR87_RS19020 0.85 +1.7
627,669 - ABZR87_RS19020 0.85 +2.0
627,669 - ABZR87_RS19020 0.85 +2.7
627,759 + ABZR87_RS19020 0.88 +1.1
627,759 + ABZR87_RS19020 0.88 +1.0
627,759 + ABZR87_RS19020 0.88 -0.2
628,234 + +1.0
628,234 + +0.9
628,235 - +1.2
628,235 - +1.8
628,417 + +1.1
628,417 + +2.6
628,418 - -2.5
628,418 - +1.4
628,418 - +2.2
628,418 - +1.4
628,657 + ABZR87_RS19025 0.17 +2.1
628,657 + ABZR87_RS19025 0.17 -0.1
628,657 + ABZR87_RS19025 0.17 +0.9
628,657 + ABZR87_RS19025 0.17 +1.4
628,657 + ABZR87_RS19025 0.17 +0.8
628,657 + ABZR87_RS19025 0.17 +1.0
628,657 + ABZR87_RS19025 0.17 +1.0
628,657 + ABZR87_RS19025 0.17 +0.7
628,657 + ABZR87_RS19025 0.17 +0.5
628,657 + ABZR87_RS19025 0.17 +1.4
628,658 - ABZR87_RS19025 0.17 -0.8
628,658 - ABZR87_RS19025 0.17 +0.7
628,658 - ABZR87_RS19025 0.17 +0.9
628,658 - ABZR87_RS19025 0.17 +1.1
628,658 - ABZR87_RS19025 0.17 +1.6
628,658 - ABZR87_RS19025 0.17 +1.2
628,658 - ABZR87_RS19025 0.17 +1.6
629,056 + ABZR87_RS19025 0.30 +0.6
629,057 - ABZR87_RS19025 0.30 +1.5
629,066 - ABZR87_RS19025 0.30 +1.0
629,101 + ABZR87_RS19025 0.31 +2.1
629,134 + ABZR87_RS19025 0.32 +0.5
629,135 - ABZR87_RS19025 0.32 +1.2
629,266 + ABZR87_RS19025 0.36 +1.0
629,320 + ABZR87_RS19025 0.38 +1.4
629,320 + ABZR87_RS19025 0.38 +0.6
629,320 + ABZR87_RS19025 0.38 +1.3
629,320 + ABZR87_RS19025 0.38 +2.0
629,321 - ABZR87_RS19025 0.38 +3.6
629,321 - ABZR87_RS19025 0.38 +1.7
629,321 - ABZR87_RS19025 0.38 +1.0
629,321 - ABZR87_RS19025 0.38 +0.7
629,629 + ABZR87_RS19025 0.48 +2.2
629,629 + ABZR87_RS19025 0.48 +1.8
629,629 + ABZR87_RS19025 0.48 +0.8
629,629 + ABZR87_RS19025 0.48 +1.5
629,629 + ABZR87_RS19025 0.48 +0.7
629,629 + ABZR87_RS19025 0.48 +1.6
629,758 + ABZR87_RS19025 0.52 -0.1
629,758 + ABZR87_RS19025 0.52 +0.4
629,758 + ABZR87_RS19025 0.52 +1.5
629,759 - ABZR87_RS19025 0.52 +1.0
629,759 - ABZR87_RS19025 0.52 +1.1
629,759 - ABZR87_RS19025 0.52 +1.7
629,759 - ABZR87_RS19025 0.52 +2.5
630,025 + ABZR87_RS19025 0.61 +2.0
630,026 - ABZR87_RS19025 0.61 -0.9
630,026 - ABZR87_RS19025 0.61 +1.9
630,130 + ABZR87_RS19025 0.64 +2.6
630,130 + ABZR87_RS19025 0.64 +1.2
630,130 + ABZR87_RS19025 0.64 +0.4
630,130 + ABZR87_RS19025 0.64 +0.3
630,131 - ABZR87_RS19025 0.64 +1.5
630,520 + ABZR87_RS19025 0.76 +2.1
630,520 + ABZR87_RS19025 0.76 +2.1
630,692 + ABZR87_RS19025 0.82 +1.8
630,692 + ABZR87_RS19025 0.82 +1.8
630,693 - ABZR87_RS19025 0.82 -1.4
630,877 + ABZR87_RS19025 0.88 +1.2
630,877 + ABZR87_RS19025 0.88 +0.6
630,878 - ABZR87_RS19025 0.88 +1.5
630,878 - ABZR87_RS19025 0.88 -0.1
631,112 - +2.5
631,113 + +0.8
631,114 - +1.1
631,114 - +0.8
631,321 + +0.7
631,322 - -1.0
631,600 + ABZR87_RS19030 0.20 +3.1
631,600 + ABZR87_RS19030 0.20 +1.4
631,601 - ABZR87_RS19030 0.20 +2.8
631,667 + ABZR87_RS19030 0.25 +1.1
631,903 + ABZR87_RS19030 0.42 +1.1
631,903 + ABZR87_RS19030 0.42 +0.9
631,903 + ABZR87_RS19030 0.42 +1.7
631,904 - ABZR87_RS19030 0.42 +1.3
631,904 - ABZR87_RS19030 0.42 +0.8
631,904 - ABZR87_RS19030 0.42 +1.2
631,904 - ABZR87_RS19030 0.42 +1.1
631,935 - ABZR87_RS19030 0.44 +0.7
631,935 - ABZR87_RS19030 0.44 +1.5
632,032 + ABZR87_RS19030 0.51 +1.6
632,033 - ABZR87_RS19030 0.51 +1.2
632,248 + ABZR87_RS19030 0.66 +2.0
632,248 + ABZR87_RS19030 0.66 +0.4
632,248 + ABZR87_RS19030 0.66 +0.3
632,248 + ABZR87_RS19030 0.66 +0.9
632,249 - ABZR87_RS19030 0.66 +0.7
632,249 - ABZR87_RS19030 0.66 +0.4
632,249 - ABZR87_RS19030 0.66 +2.1
632,249 - ABZR87_RS19030 0.66 -1.0

Or see this region's nucleotide sequence