Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16330 and ABZR87_RS16335 are separated by 10 nucleotides ABZR87_RS16335 and ABZR87_RS16340 are separated by 7 nucleotides ABZR87_RS16340 and ABZR87_RS16345 overlap by 4 nucleotides
ABZR87_RS16330: ABZR87_RS16330 - branched-chain amino acid ABC transporter permease, at 16,600 to 17,481
_RS16330
ABZR87_RS16335: ABZR87_RS16335 - branched-chain amino acid ABC transporter permease, at 17,492 to 18,400
_RS16335
ABZR87_RS16340: ABZR87_RS16340 - ABC transporter ATP-binding protein, at 18,408 to 19,205
_RS16340
ABZR87_RS16345: ABZR87_RS16345 - ABC transporter ATP-binding protein, at 19,202 to 19,927
_RS16345
Position (kb)
17
18
19 Strain fitness (log2 ratio)
-1
0
1
2 at 16.514 kb on + strand at 16.514 kb on + strand at 16.518 kb on + strand at 16.518 kb on + strand at 16.519 kb on - strand at 16.519 kb on - strand at 16.519 kb on - strand at 16.524 kb on + strand at 16.524 kb on + strand at 16.645 kb on + strand at 16.645 kb on + strand at 16.645 kb on + strand at 16.646 kb on - strand at 16.646 kb on - strand at 16.646 kb on - strand at 16.646 kb on - strand at 16.735 kb on + strand, within ABZR87_RS16330 at 16.736 kb on - strand, within ABZR87_RS16330 at 17.230 kb on + strand, within ABZR87_RS16330 at 17.230 kb on + strand, within ABZR87_RS16330 at 17.231 kb on - strand, within ABZR87_RS16330 at 17.231 kb on - strand, within ABZR87_RS16330 at 17.374 kb on + strand, within ABZR87_RS16330 at 17.374 kb on + strand, within ABZR87_RS16330 at 17.374 kb on + strand, within ABZR87_RS16330 at 17.375 kb on - strand, within ABZR87_RS16330 at 17.375 kb on - strand, within ABZR87_RS16330 at 17.479 kb on + strand at 17.480 kb on - strand at 17.577 kb on - strand at 17.639 kb on + strand, within ABZR87_RS16335 at 17.639 kb on + strand, within ABZR87_RS16335 at 17.639 kb on + strand, within ABZR87_RS16335 at 17.766 kb on - strand, within ABZR87_RS16335 at 17.995 kb on + strand, within ABZR87_RS16335 at 17.996 kb on - strand, within ABZR87_RS16335 at 18.019 kb on + strand, within ABZR87_RS16335 at 18.019 kb on + strand, within ABZR87_RS16335 at 18.019 kb on + strand, within ABZR87_RS16335 at 18.019 kb on + strand, within ABZR87_RS16335 at 18.019 kb on + strand, within ABZR87_RS16335 at 18.020 kb on - strand, within ABZR87_RS16335 at 18.020 kb on - strand, within ABZR87_RS16335 at 18.726 kb on + strand, within ABZR87_RS16340 at 18.726 kb on + strand, within ABZR87_RS16340 at 19.073 kb on + strand, within ABZR87_RS16340 at 19.143 kb on + strand at 19.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 16,514 + +0.3 16,514 + +0.7 16,518 + -0.7 16,518 + -0.1 16,519 - +0.2 16,519 - -0.3 16,519 - -0.2 16,524 + -0.7 16,524 + +0.5 16,645 + +0.3 16,645 + +0.6 16,645 + -0.1 16,646 - -0.7 16,646 - +0.5 16,646 - -1.2 16,646 - -0.7 16,735 + ABZR87_RS16330 0.15 -1.4 16,736 - ABZR87_RS16330 0.15 -0.0 17,230 + ABZR87_RS16330 0.71 -0.3 17,230 + ABZR87_RS16330 0.71 +0.3 17,231 - ABZR87_RS16330 0.72 +0.1 17,231 - ABZR87_RS16330 0.72 +2.2 17,374 + ABZR87_RS16330 0.88 +1.0 17,374 + ABZR87_RS16330 0.88 -1.5 17,374 + ABZR87_RS16330 0.88 +0.7 17,375 - ABZR87_RS16330 0.88 +0.2 17,375 - ABZR87_RS16330 0.88 -1.4 17,479 + -0.9 17,480 - -0.4 17,577 - +0.7 17,639 + ABZR87_RS16335 0.16 +0.8 17,639 + ABZR87_RS16335 0.16 -0.5 17,639 + ABZR87_RS16335 0.16 -1.2 17,766 - ABZR87_RS16335 0.30 -0.5 17,995 + ABZR87_RS16335 0.55 +0.2 17,996 - ABZR87_RS16335 0.55 -1.7 18,019 + ABZR87_RS16335 0.58 +0.0 18,019 + ABZR87_RS16335 0.58 -0.9 18,019 + ABZR87_RS16335 0.58 -1.1 18,019 + ABZR87_RS16335 0.58 +1.4 18,019 + ABZR87_RS16335 0.58 +0.7 18,020 - ABZR87_RS16335 0.58 +0.1 18,020 - ABZR87_RS16335 0.58 +0.9 18,726 + ABZR87_RS16340 0.40 -0.7 18,726 + ABZR87_RS16340 0.40 -1.5 19,073 + ABZR87_RS16340 0.83 +0.4 19,143 + +1.1 19,144 - +0.2
Or see this region's nucleotide sequence