Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16275 and ABZR87_RS16280 overlap by 4 nucleotides ABZR87_RS16280 and ABZR87_RS16285 are separated by 318 nucleotides
ABZR87_RS16275: ABZR87_RS16275 - ParA family protein, at 1,775 to 2,443
_RS16275
ABZR87_RS16280: ABZR87_RS16280 - ParB/RepB/Spo0J family partition protein, at 2,440 to 3,450
_RS16280
ABZR87_RS16285: ABZR87_RS16285 - hypothetical protein, at 3,769 to 4,587
_RS16285
Position (kb) 2
3
4 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1.445 kb on + strand at 1.445 kb on + strand at 1.470 kb on + strand at 1.471 kb on - strand at 1.471 kb on - strand at 1.471 kb on - strand at 1.534 kb on - strand at 1.534 kb on - strand at 1.548 kb on + strand at 1.549 kb on - strand at 1.556 kb on + strand at 1.556 kb on + strand at 1.556 kb on + strand at 1.556 kb on + strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.568 kb on - strand at 1.568 kb on - strand at 1.568 kb on - strand at 1.589 kb on + strand at 1.589 kb on + strand at 1.589 kb on + strand at 1.589 kb on + strand at 1.589 kb on + strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.593 kb on + strand at 1.593 kb on + strand at 1.594 kb on - strand at 1.594 kb on - strand at 1.594 kb on - strand at 1.613 kb on + strand at 1.614 kb on - strand at 1.687 kb on - strand at 1.687 kb on - strand at 1.700 kb on + strand at 1.701 kb on - strand at 3.443 kb on + strand at 3.443 kb on + strand at 3.444 kb on - strand at 3.448 kb on + strand at 3.448 kb on + strand at 3.448 kb on + strand at 3.448 kb on + strand at 3.448 kb on + strand at 3.448 kb on + strand at 3.449 kb on - strand at 3.449 kb on - strand at 3.449 kb on - strand at 3.449 kb on - strand at 3.578 kb on - strand at 3.667 kb on - strand at 3.669 kb on + strand at 3.683 kb on - strand at 3.840 kb on + strand at 3.916 kb on + strand, within ABZR87_RS16285 at 3.916 kb on + strand, within ABZR87_RS16285 at 3.917 kb on - strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.932 kb on - strand, within ABZR87_RS16285 at 3.932 kb on - strand, within ABZR87_RS16285 at 3.932 kb on - strand, within ABZR87_RS16285 at 3.959 kb on + strand, within ABZR87_RS16285 at 3.978 kb on + strand, within ABZR87_RS16285 at 3.978 kb on + strand, within ABZR87_RS16285 at 3.978 kb on + strand, within ABZR87_RS16285 at 3.979 kb on - strand, within ABZR87_RS16285 at 4.032 kb on + strand, within ABZR87_RS16285 at 4.033 kb on - strand, within ABZR87_RS16285 at 4.116 kb on + strand, within ABZR87_RS16285 at 4.116 kb on + strand, within ABZR87_RS16285 at 4.116 kb on + strand, within ABZR87_RS16285 at 4.116 kb on + strand, within ABZR87_RS16285 at 4.116 kb on + strand, within ABZR87_RS16285 at 4.117 kb on - strand, within ABZR87_RS16285 at 4.117 kb on - strand, within ABZR87_RS16285 at 4.117 kb on - strand, within ABZR87_RS16285 at 4.117 kb on - strand, within ABZR87_RS16285
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 1,445 + -2.6 1,445 + -0.6 1,470 + -2.1 1,471 - -3.1 1,471 - -2.5 1,471 - -0.6 1,534 - -0.0 1,534 - -0.7 1,548 + -1.4 1,549 - +0.8 1,556 + -3.2 1,556 + -4.2 1,556 + -2.4 1,556 + -4.0 1,567 + -3.6 1,567 + -0.4 1,567 + -4.6 1,567 + -1.9 1,567 + -2.3 1,568 - +0.6 1,568 - -1.1 1,568 - +2.0 1,589 + -1.3 1,589 + -1.9 1,589 + -3.5 1,589 + -3.2 1,589 + -1.6 1,590 - +0.4 1,590 - -0.8 1,590 - +0.5 1,590 - -0.3 1,590 - +0.2 1,590 - -0.3 1,590 - +0.3 1,590 - +0.5 1,590 - +0.5 1,590 - -0.1 1,593 + -2.6 1,593 + -0.6 1,594 - +0.2 1,594 - +1.2 1,594 - +0.6 1,613 + -1.5 1,614 - +1.3 1,687 - -0.5 1,687 - +1.1 1,700 + -1.9 1,701 - -3.1 3,443 + +0.5 3,443 + +0.4 3,444 - -0.1 3,448 + +0.9 3,448 + +0.2 3,448 + +0.1 3,448 + -2.2 3,448 + -0.0 3,448 + -0.1 3,449 - -1.0 3,449 - -0.3 3,449 - +0.7 3,449 - -0.1 3,578 - -0.8 3,667 - -1.0 3,669 + -0.4 3,683 - -1.3 3,840 + +0.8 3,916 + ABZR87_RS16285 0.18 -2.5 3,916 + ABZR87_RS16285 0.18 -0.8 3,917 - ABZR87_RS16285 0.18 -0.3 3,931 + ABZR87_RS16285 0.20 -0.4 3,931 + ABZR87_RS16285 0.20 -1.0 3,931 + ABZR87_RS16285 0.20 -0.6 3,931 + ABZR87_RS16285 0.20 -0.5 3,931 + ABZR87_RS16285 0.20 -1.8 3,931 + ABZR87_RS16285 0.20 -1.1 3,931 + ABZR87_RS16285 0.20 -1.3 3,932 - ABZR87_RS16285 0.20 -1.1 3,932 - ABZR87_RS16285 0.20 -0.6 3,932 - ABZR87_RS16285 0.20 +0.8 3,959 + ABZR87_RS16285 0.23 -1.0 3,978 + ABZR87_RS16285 0.26 +0.1 3,978 + ABZR87_RS16285 0.26 -0.5 3,978 + ABZR87_RS16285 0.26 -0.6 3,979 - ABZR87_RS16285 0.26 +0.6 4,032 + ABZR87_RS16285 0.32 -0.2 4,033 - ABZR87_RS16285 0.32 -1.1 4,116 + ABZR87_RS16285 0.42 +0.3 4,116 + ABZR87_RS16285 0.42 -0.3 4,116 + ABZR87_RS16285 0.42 -0.2 4,116 + ABZR87_RS16285 0.42 -2.3 4,116 + ABZR87_RS16285 0.42 -1.9 4,117 - ABZR87_RS16285 0.42 -0.9 4,117 - ABZR87_RS16285 0.42 -0.4 4,117 - ABZR87_RS16285 0.42 -0.6 4,117 - ABZR87_RS16285 0.42 -0.9
Or see this region's nucleotide sequence