Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15400

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15390 and ABZR87_RS15395 are separated by 65 nucleotidesABZR87_RS15395 and ABZR87_RS15400 are separated by 71 nucleotidesABZR87_RS15400 and ABZR87_RS15405 are separated by 171 nucleotidesABZR87_RS15405 and ABZR87_RS15410 are separated by 94 nucleotides ABZR87_RS15390: ABZR87_RS15390 - NCS1 family nucleobase:cation symporter-1, at 3,238,530 to 3,240,008 _RS15390 ABZR87_RS15395: ABZR87_RS15395 - uracil phosphoribosyltransferase, at 3,240,074 to 3,240,724 _RS15395 ABZR87_RS15400: ABZR87_RS15400 - helicase HerA-like C-terminal domain-containing protein, at 3,240,796 to 3,242,361 _RS15400 ABZR87_RS15405: ABZR87_RS15405 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,242,533 to 3,243,258 _RS15405 ABZR87_RS15410: ABZR87_RS15410 - phosphoribosylamine--glycine ligase, at 3,243,353 to 3,244,621 _RS15410 Position (kb) 3240 3241 3242 3243Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3239.812 kb on - strand, within ABZR87_RS15390at 3239.934 kb on + strandat 3239.934 kb on + strandat 3239.934 kb on - strandat 3239.935 kb on - strandat 3239.935 kb on - strandat 3239.935 kb on - strandat 3239.935 kb on - strandat 3239.940 kb on + strandat 3239.940 kb on + strandat 3239.940 kb on + strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.979 kb on + strandat 3239.979 kb on + strandat 3239.979 kb on + strandat 3239.979 kb on + strandat 3239.979 kb on + strandat 3239.979 kb on + strandat 3239.980 kb on - strandat 3239.980 kb on - strandat 3239.980 kb on - strandat 3239.980 kb on - strandat 3239.980 kb on - strandat 3240.040 kb on + strandat 3240.040 kb on + strandat 3240.041 kb on - strandat 3240.340 kb on + strand, within ABZR87_RS15395at 3240.340 kb on + strand, within ABZR87_RS15395at 3240.668 kb on + strandat 3240.668 kb on + strandat 3240.669 kb on - strandat 3241.472 kb on + strand, within ABZR87_RS15400at 3241.472 kb on + strand, within ABZR87_RS15400at 3241.473 kb on - strand, within ABZR87_RS15400at 3241.662 kb on - strand, within ABZR87_RS15400at 3241.662 kb on - strand, within ABZR87_RS15400at 3241.662 kb on - strand, within ABZR87_RS15400at 3241.662 kb on - strand, within ABZR87_RS15400at 3241.839 kb on + strand, within ABZR87_RS15400at 3241.839 kb on + strand, within ABZR87_RS15400at 3241.840 kb on - strand, within ABZR87_RS15400at 3241.840 kb on - strand, within ABZR87_RS15400at 3241.840 kb on - strand, within ABZR87_RS15400at 3241.840 kb on - strand, within ABZR87_RS15400at 3241.848 kb on - strand, within ABZR87_RS15400at 3241.859 kb on + strand, within ABZR87_RS15400at 3241.860 kb on - strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.062 kb on + strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.063 kb on - strand, within ABZR87_RS15400at 3242.444 kb on + strandat 3242.444 kb on + strandat 3242.444 kb on + strandat 3242.461 kb on + strandat 3242.463 kb on + strandat 3242.463 kb on + strandat 3242.463 kb on + strandat 3242.559 kb on + strandat 3242.568 kb on + strandat 3242.568 kb on + strandat 3242.776 kb on + strand, within ABZR87_RS15405at 3242.776 kb on + strand, within ABZR87_RS15405at 3242.890 kb on + strand, within ABZR87_RS15405at 3242.890 kb on + strand, within ABZR87_RS15405at 3242.890 kb on + strand, within ABZR87_RS15405at 3242.890 kb on + strand, within ABZR87_RS15405at 3243.256 kb on + strandat 3243.347 kb on + strandat 3243.347 kb on + strandat 3243.347 kb on + strandat 3243.347 kb on + strandat 3243.348 kb on - strandat 3243.348 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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3,239,812 - ABZR87_RS15390 0.87 +0.4
3,239,934 + +1.1
3,239,934 + +0.7
3,239,934 - -0.1
3,239,935 - +0.1
3,239,935 - -0.0
3,239,935 - +0.5
3,239,935 - +0.8
3,239,940 + -0.5
3,239,940 + +4.3
3,239,940 + +0.3
3,239,941 - -0.7
3,239,941 - +0.5
3,239,941 - +0.4
3,239,941 - +0.7
3,239,941 - +2.1
3,239,941 - -1.7
3,239,941 - -0.4
3,239,941 - +0.8
3,239,979 + +1.1
3,239,979 + +0.1
3,239,979 + +0.1
3,239,979 + +0.0
3,239,979 + -0.1
3,239,979 + +0.2
3,239,980 - +0.5
3,239,980 - +0.7
3,239,980 - +0.4
3,239,980 - -1.8
3,239,980 - -0.9
3,240,040 + -1.7
3,240,040 + -1.3
3,240,041 - -1.1
3,240,340 + ABZR87_RS15395 0.41 +0.5
3,240,340 + ABZR87_RS15395 0.41 +0.1
3,240,668 + +1.3
3,240,668 + -1.1
3,240,669 - -0.0
3,241,472 + ABZR87_RS15400 0.43 -0.3
3,241,472 + ABZR87_RS15400 0.43 -0.3
3,241,473 - ABZR87_RS15400 0.43 +0.0
3,241,662 - ABZR87_RS15400 0.55 +0.4
3,241,662 - ABZR87_RS15400 0.55 +0.2
3,241,662 - ABZR87_RS15400 0.55 +0.3
3,241,662 - ABZR87_RS15400 0.55 -0.1
3,241,839 + ABZR87_RS15400 0.67 -1.4
3,241,839 + ABZR87_RS15400 0.67 +0.3
3,241,840 - ABZR87_RS15400 0.67 -1.1
3,241,840 - ABZR87_RS15400 0.67 -1.2
3,241,840 - ABZR87_RS15400 0.67 -0.5
3,241,840 - ABZR87_RS15400 0.67 +1.5
3,241,848 - ABZR87_RS15400 0.67 +0.8
3,241,859 + ABZR87_RS15400 0.68 -0.8
3,241,860 - ABZR87_RS15400 0.68 -1.3
3,242,062 + ABZR87_RS15400 0.81 -1.2
3,242,062 + ABZR87_RS15400 0.81 -0.2
3,242,062 + ABZR87_RS15400 0.81 +1.5
3,242,062 + ABZR87_RS15400 0.81 +1.4
3,242,062 + ABZR87_RS15400 0.81 +0.8
3,242,062 + ABZR87_RS15400 0.81 -0.3
3,242,062 + ABZR87_RS15400 0.81 +0.9
3,242,062 + ABZR87_RS15400 0.81 +0.5
3,242,062 + ABZR87_RS15400 0.81 +0.8
3,242,062 + ABZR87_RS15400 0.81 -1.0
3,242,063 - ABZR87_RS15400 0.81 +0.2
3,242,063 - ABZR87_RS15400 0.81 +0.1
3,242,063 - ABZR87_RS15400 0.81 -1.2
3,242,063 - ABZR87_RS15400 0.81 +0.1
3,242,063 - ABZR87_RS15400 0.81 -0.4
3,242,063 - ABZR87_RS15400 0.81 +0.0
3,242,063 - ABZR87_RS15400 0.81 -0.3
3,242,063 - ABZR87_RS15400 0.81 +0.2
3,242,063 - ABZR87_RS15400 0.81 -0.4
3,242,063 - ABZR87_RS15400 0.81 -0.7
3,242,063 - ABZR87_RS15400 0.81 +0.2
3,242,063 - ABZR87_RS15400 0.81 +0.3
3,242,063 - ABZR87_RS15400 0.81 -1.0
3,242,444 + +0.8
3,242,444 + +0.7
3,242,444 + +1.9
3,242,461 + -0.6
3,242,463 + -0.3
3,242,463 + +0.0
3,242,463 + -0.7
3,242,559 + -1.7
3,242,568 + -3.3
3,242,568 + -1.4
3,242,776 + ABZR87_RS15405 0.33 -0.1
3,242,776 + ABZR87_RS15405 0.33 -2.4
3,242,890 + ABZR87_RS15405 0.49 -3.2
3,242,890 + ABZR87_RS15405 0.49 -4.1
3,242,890 + ABZR87_RS15405 0.49 -1.4
3,242,890 + ABZR87_RS15405 0.49 -2.2
3,243,256 + +0.8
3,243,347 + -1.8
3,243,347 + -1.0
3,243,347 + -1.5
3,243,347 + -1.2
3,243,348 - +1.3
3,243,348 - +0.3

Or see this region's nucleotide sequence