Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15340 and ABZR87_RS15345 are separated by 482 nucleotides ABZR87_RS15345 and ABZR87_RS15350 overlap by 8 nucleotides
ABZR87_RS15340: ABZR87_RS15340 - multidrug effflux MFS transporter, at 3,228,215 to 3,229,429
_RS15340
ABZR87_RS15345: ABZR87_RS15345 - ABC transporter ATP-binding protein, at 3,229,912 to 3,231,426
_RS15345
ABZR87_RS15350: ABZR87_RS15350 - ABC transporter permease, at 3,231,419 to 3,232,528
_RS15350
Position (kb)
3229
3230
3231
3232 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3229.002 kb on + strand, within ABZR87_RS15340 at 3229.002 kb on + strand, within ABZR87_RS15340 at 3229.155 kb on + strand, within ABZR87_RS15340 at 3229.156 kb on - strand, within ABZR87_RS15340 at 3229.156 kb on - strand, within ABZR87_RS15340 at 3229.156 kb on - strand, within ABZR87_RS15340 at 3229.173 kb on + strand, within ABZR87_RS15340 at 3229.173 kb on + strand, within ABZR87_RS15340 at 3229.173 kb on + strand, within ABZR87_RS15340 at 3229.174 kb on - strand, within ABZR87_RS15340 at 3229.174 kb on - strand, within ABZR87_RS15340 at 3229.174 kb on - strand, within ABZR87_RS15340 at 3229.174 kb on - strand, within ABZR87_RS15340 at 3229.215 kb on + strand, within ABZR87_RS15340 at 3229.216 kb on - strand, within ABZR87_RS15340 at 3229.285 kb on + strand, within ABZR87_RS15340 at 3229.285 kb on + strand, within ABZR87_RS15340 at 3229.285 kb on + strand, within ABZR87_RS15340 at 3229.285 kb on + strand, within ABZR87_RS15340 at 3229.285 kb on + strand, within ABZR87_RS15340 at 3229.286 kb on - strand, within ABZR87_RS15340 at 3229.286 kb on - strand, within ABZR87_RS15340 at 3229.286 kb on - strand, within ABZR87_RS15340 at 3229.286 kb on - strand, within ABZR87_RS15340 at 3229.323 kb on + strand at 3229.323 kb on + strand at 3229.323 kb on + strand at 3229.324 kb on - strand at 3229.324 kb on - strand at 3229.324 kb on - strand at 3229.324 kb on - strand at 3229.324 kb on - strand at 3229.324 kb on - strand at 3229.488 kb on - strand at 3229.576 kb on - strand at 3229.576 kb on - strand at 3229.652 kb on + strand at 3229.652 kb on + strand at 3229.705 kb on + strand at 3229.707 kb on + strand at 3229.708 kb on - strand at 3229.834 kb on + strand at 3229.835 kb on - strand at 3229.924 kb on + strand at 3230.289 kb on + strand, within ABZR87_RS15345 at 3230.289 kb on + strand, within ABZR87_RS15345 at 3230.289 kb on + strand, within ABZR87_RS15345 at 3230.289 kb on + strand, within ABZR87_RS15345 at 3230.289 kb on + strand, within ABZR87_RS15345 at 3230.289 kb on + strand, within ABZR87_RS15345 at 3230.290 kb on - strand, within ABZR87_RS15345 at 3230.290 kb on - strand, within ABZR87_RS15345 at 3230.290 kb on - strand, within ABZR87_RS15345 at 3230.290 kb on - strand, within ABZR87_RS15345 at 3230.290 kb on - strand, within ABZR87_RS15345 at 3230.290 kb on - strand, within ABZR87_RS15345 at 3230.290 kb on - strand, within ABZR87_RS15345 at 3230.290 kb on - strand, within ABZR87_RS15345 at 3230.455 kb on + strand, within ABZR87_RS15345 at 3230.455 kb on + strand, within ABZR87_RS15345 at 3230.456 kb on - strand, within ABZR87_RS15345 at 3230.456 kb on - strand, within ABZR87_RS15345 at 3230.456 kb on - strand, within ABZR87_RS15345 at 3230.744 kb on + strand, within ABZR87_RS15345 at 3230.940 kb on + strand, within ABZR87_RS15345 at 3231.237 kb on + strand, within ABZR87_RS15345 at 3231.501 kb on - strand at 3231.692 kb on + strand, within ABZR87_RS15350 at 3231.692 kb on + strand, within ABZR87_RS15350 at 3231.693 kb on - strand, within ABZR87_RS15350 at 3231.770 kb on + strand, within ABZR87_RS15350 at 3231.771 kb on - strand, within ABZR87_RS15350 at 3231.922 kb on + strand, within ABZR87_RS15350 at 3231.922 kb on + strand, within ABZR87_RS15350 at 3231.922 kb on + strand, within ABZR87_RS15350 at 3231.922 kb on + strand, within ABZR87_RS15350 at 3231.922 kb on + strand, within ABZR87_RS15350 at 3231.922 kb on + strand, within ABZR87_RS15350 at 3231.922 kb on + strand, within ABZR87_RS15350 at 3231.922 kb on + strand, within ABZR87_RS15350 at 3231.922 kb on + strand, within ABZR87_RS15350 at 3231.923 kb on - strand, within ABZR87_RS15350 at 3231.923 kb on - strand, within ABZR87_RS15350 at 3231.923 kb on - strand, within ABZR87_RS15350 at 3231.923 kb on - strand, within ABZR87_RS15350 at 3231.923 kb on - strand, within ABZR87_RS15350 at 3231.923 kb on - strand, within ABZR87_RS15350 at 3231.923 kb on - strand, within ABZR87_RS15350 at 3231.923 kb on - strand, within ABZR87_RS15350 at 3231.923 kb on - strand, within ABZR87_RS15350 at 3231.926 kb on + strand, within ABZR87_RS15350 at 3231.926 kb on + strand, within ABZR87_RS15350 at 3231.926 kb on + strand, within ABZR87_RS15350 at 3231.926 kb on + strand, within ABZR87_RS15350 at 3231.926 kb on + strand, within ABZR87_RS15350 at 3231.927 kb on - strand, within ABZR87_RS15350 at 3231.927 kb on - strand, within ABZR87_RS15350 at 3231.927 kb on - strand, within ABZR87_RS15350 at 3231.927 kb on - strand, within ABZR87_RS15350 at 3231.927 kb on - strand, within ABZR87_RS15350 at 3231.950 kb on + strand, within ABZR87_RS15350 at 3231.950 kb on + strand, within ABZR87_RS15350 at 3231.950 kb on + strand, within ABZR87_RS15350 at 3231.950 kb on + strand, within ABZR87_RS15350 at 3231.951 kb on - strand, within ABZR87_RS15350 at 3232.172 kb on + strand, within ABZR87_RS15350 at 3232.173 kb on - strand, within ABZR87_RS15350 at 3232.301 kb on + strand, within ABZR87_RS15350 at 3232.388 kb on + strand, within ABZR87_RS15350 at 3232.388 kb on + strand, within ABZR87_RS15350 at 3232.388 kb on + strand, within ABZR87_RS15350 at 3232.388 kb on + strand, within ABZR87_RS15350 at 3232.389 kb on - strand, within ABZR87_RS15350 at 3232.389 kb on - strand, within ABZR87_RS15350 at 3232.389 kb on - strand, within ABZR87_RS15350 at 3232.389 kb on - strand, within ABZR87_RS15350
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 3,229,002 + ABZR87_RS15340 0.65 +0.1 3,229,002 + ABZR87_RS15340 0.65 +0.4 3,229,155 + ABZR87_RS15340 0.77 -0.3 3,229,156 - ABZR87_RS15340 0.77 -1.6 3,229,156 - ABZR87_RS15340 0.77 -0.7 3,229,156 - ABZR87_RS15340 0.77 -0.3 3,229,173 + ABZR87_RS15340 0.79 +0.1 3,229,173 + ABZR87_RS15340 0.79 +1.5 3,229,173 + ABZR87_RS15340 0.79 -0.4 3,229,174 - ABZR87_RS15340 0.79 +0.6 3,229,174 - ABZR87_RS15340 0.79 -1.0 3,229,174 - ABZR87_RS15340 0.79 +0.3 3,229,174 - ABZR87_RS15340 0.79 -1.1 3,229,215 + ABZR87_RS15340 0.82 +0.3 3,229,216 - ABZR87_RS15340 0.82 +0.4 3,229,285 + ABZR87_RS15340 0.88 +0.7 3,229,285 + ABZR87_RS15340 0.88 +2.3 3,229,285 + ABZR87_RS15340 0.88 +1.1 3,229,285 + ABZR87_RS15340 0.88 +1.1 3,229,285 + ABZR87_RS15340 0.88 +1.5 3,229,286 - ABZR87_RS15340 0.88 -0.5 3,229,286 - ABZR87_RS15340 0.88 -2.1 3,229,286 - ABZR87_RS15340 0.88 -0.8 3,229,286 - ABZR87_RS15340 0.88 -1.6 3,229,323 + +1.0 3,229,323 + +0.8 3,229,323 + -1.7 3,229,324 - +0.3 3,229,324 - -1.8 3,229,324 - +0.2 3,229,324 - +0.4 3,229,324 - -0.6 3,229,324 - +0.2 3,229,488 - +0.7 3,229,576 - +0.7 3,229,576 - +0.5 3,229,652 + +0.5 3,229,652 + +1.1 3,229,705 + +1.3 3,229,707 + +0.6 3,229,708 - -2.8 3,229,834 + -0.2 3,229,835 - -0.2 3,229,924 + -0.8 3,230,289 + ABZR87_RS15345 0.25 -0.1 3,230,289 + ABZR87_RS15345 0.25 -1.3 3,230,289 + ABZR87_RS15345 0.25 -0.6 3,230,289 + ABZR87_RS15345 0.25 +1.7 3,230,289 + ABZR87_RS15345 0.25 +1.6 3,230,289 + ABZR87_RS15345 0.25 +0.1 3,230,290 - ABZR87_RS15345 0.25 +0.3 3,230,290 - ABZR87_RS15345 0.25 +0.3 3,230,290 - ABZR87_RS15345 0.25 +0.5 3,230,290 - ABZR87_RS15345 0.25 -1.5 3,230,290 - ABZR87_RS15345 0.25 -0.8 3,230,290 - ABZR87_RS15345 0.25 -1.7 3,230,290 - ABZR87_RS15345 0.25 -1.4 3,230,290 - ABZR87_RS15345 0.25 -0.9 3,230,455 + ABZR87_RS15345 0.36 +1.1 3,230,455 + ABZR87_RS15345 0.36 -2.4 3,230,456 - ABZR87_RS15345 0.36 +0.7 3,230,456 - ABZR87_RS15345 0.36 -0.8 3,230,456 - ABZR87_RS15345 0.36 +0.4 3,230,744 + ABZR87_RS15345 0.55 +0.9 3,230,940 + ABZR87_RS15345 0.68 -4.1 3,231,237 + ABZR87_RS15345 0.87 -0.1 3,231,501 - -0.4 3,231,692 + ABZR87_RS15350 0.25 +1.2 3,231,692 + ABZR87_RS15350 0.25 +1.6 3,231,693 - ABZR87_RS15350 0.25 +0.8 3,231,770 + ABZR87_RS15350 0.32 +0.5 3,231,771 - ABZR87_RS15350 0.32 -2.1 3,231,922 + ABZR87_RS15350 0.45 +0.1 3,231,922 + ABZR87_RS15350 0.45 +0.9 3,231,922 + ABZR87_RS15350 0.45 +0.7 3,231,922 + ABZR87_RS15350 0.45 -0.5 3,231,922 + ABZR87_RS15350 0.45 +0.8 3,231,922 + ABZR87_RS15350 0.45 +0.2 3,231,922 + ABZR87_RS15350 0.45 +0.8 3,231,922 + ABZR87_RS15350 0.45 +0.3 3,231,922 + ABZR87_RS15350 0.45 +0.3 3,231,923 - ABZR87_RS15350 0.45 -0.5 3,231,923 - ABZR87_RS15350 0.45 +1.0 3,231,923 - ABZR87_RS15350 0.45 +1.3 3,231,923 - ABZR87_RS15350 0.45 +1.3 3,231,923 - ABZR87_RS15350 0.45 +0.6 3,231,923 - ABZR87_RS15350 0.45 +0.6 3,231,923 - ABZR87_RS15350 0.45 +1.3 3,231,923 - ABZR87_RS15350 0.45 +1.1 3,231,923 - ABZR87_RS15350 0.45 -0.9 3,231,926 + ABZR87_RS15350 0.46 -1.6 3,231,926 + ABZR87_RS15350 0.46 +0.5 3,231,926 + ABZR87_RS15350 0.46 +1.5 3,231,926 + ABZR87_RS15350 0.46 +0.0 3,231,926 + ABZR87_RS15350 0.46 +0.6 3,231,927 - ABZR87_RS15350 0.46 -1.6 3,231,927 - ABZR87_RS15350 0.46 -0.3 3,231,927 - ABZR87_RS15350 0.46 -0.7 3,231,927 - ABZR87_RS15350 0.46 +0.2 3,231,927 - ABZR87_RS15350 0.46 -2.3 3,231,950 + ABZR87_RS15350 0.48 +0.8 3,231,950 + ABZR87_RS15350 0.48 -0.5 3,231,950 + ABZR87_RS15350 0.48 +0.6 3,231,950 + ABZR87_RS15350 0.48 -1.7 3,231,951 - ABZR87_RS15350 0.48 +2.0 3,232,172 + ABZR87_RS15350 0.68 +1.0 3,232,173 - ABZR87_RS15350 0.68 +0.7 3,232,301 + ABZR87_RS15350 0.79 +1.3 3,232,388 + ABZR87_RS15350 0.87 -0.7 3,232,388 + ABZR87_RS15350 0.87 +1.2 3,232,388 + ABZR87_RS15350 0.87 -0.2 3,232,388 + ABZR87_RS15350 0.87 +0.2 3,232,389 - ABZR87_RS15350 0.87 -0.5 3,232,389 - ABZR87_RS15350 0.87 -2.6 3,232,389 - ABZR87_RS15350 0.87 -0.9 3,232,389 - ABZR87_RS15350 0.87 -0.4
Or see this region's nucleotide sequence