Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14545

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14540 and ABZR87_RS14545 are separated by 227 nucleotidesABZR87_RS14545 and ABZR87_RS14550 are separated by 122 nucleotidesABZR87_RS14550 and ABZR87_RS14555 are separated by 71 nucleotides ABZR87_RS14540: ABZR87_RS14540 - 3-isopropylmalate dehydratase large subunit, at 3,071,495 to 3,072,904 _RS14540 ABZR87_RS14545: ABZR87_RS14545 - citrate synthase, at 3,073,132 to 3,074,433 _RS14545 ABZR87_RS14550: ABZR87_RS14550 - succinate dehydrogenase assembly factor 2, at 3,074,556 to 3,074,843 _RS14550 ABZR87_RS14555: ABZR87_RS14555 - succinate dehydrogenase iron-sulfur subunit, at 3,074,915 to 3,075,616 _RS14555 Position (kb) 3073 3074 3075Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3072.180 kb on + strand, within ABZR87_RS14540at 3072.181 kb on - strand, within ABZR87_RS14540at 3072.449 kb on + strand, within ABZR87_RS14540at 3072.449 kb on + strand, within ABZR87_RS14540at 3072.450 kb on - strand, within ABZR87_RS14540at 3072.628 kb on - strand, within ABZR87_RS14540at 3072.628 kb on - strand, within ABZR87_RS14540at 3072.828 kb on + strandat 3072.828 kb on + strandat 3072.828 kb on + strandat 3072.828 kb on + strandat 3072.829 kb on - strandat 3072.829 kb on - strandat 3072.829 kb on - strandat 3072.856 kb on + strandat 3072.916 kb on + strandat 3072.982 kb on + strandat 3072.982 kb on + strandat 3073.133 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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3,072,180 + ABZR87_RS14540 0.49 -4.8
3,072,181 - ABZR87_RS14540 0.49 -3.1
3,072,449 + ABZR87_RS14540 0.68 -2.1
3,072,449 + ABZR87_RS14540 0.68 -2.4
3,072,450 - ABZR87_RS14540 0.68 -4.5
3,072,628 - ABZR87_RS14540 0.80 -4.6
3,072,628 - ABZR87_RS14540 0.80 -0.8
3,072,828 + -2.4
3,072,828 + -0.4
3,072,828 + -3.7
3,072,828 + -2.5
3,072,829 - -2.0
3,072,829 - -1.4
3,072,829 - -2.7
3,072,856 + -2.0
3,072,916 + -2.2
3,072,982 + -3.7
3,072,982 + -4.0
3,073,133 + -0.4

Or see this region's nucleotide sequence