Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14110 and ABZR87_RS14115 are separated by 145 nucleotides ABZR87_RS14115 and ABZR87_RS14120 are separated by 128 nucleotides ABZR87_RS14120 and ABZR87_RS14125 are separated by 108 nucleotides
ABZR87_RS14110: ABZR87_RS14110 - dihydropteroate synthase, at 2,978,685 to 2,979,548
_RS14110
ABZR87_RS14115: ABZR87_RS14115 - ATP-dependent zinc metalloprotease FtsH, at 2,979,694 to 2,981,580
_RS14115
ABZR87_RS14120: ABZR87_RS14120 - RlmE family RNA methyltransferase, at 2,981,709 to 2,982,374
_RS14120
ABZR87_RS14125: ABZR87_RS14125 - YhbY family RNA-binding protein, at 2,982,483 to 2,982,983
_RS14125
Position (kb)
2979
2980
2981
2982 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2978.703 kb on + strand at 2978.703 kb on + strand at 2978.703 kb on + strand at 2979.564 kb on - strand at 2979.564 kb on - strand at 2979.564 kb on - strand at 2979.564 kb on - strand at 2979.682 kb on - strand at 2979.760 kb on - strand at 2980.028 kb on + strand, within ABZR87_RS14115 at 2980.622 kb on + strand, within ABZR87_RS14115 at 2980.623 kb on - strand, within ABZR87_RS14115 at 2980.623 kb on - strand, within ABZR87_RS14115 at 2981.261 kb on + strand, within ABZR87_RS14115 at 2981.262 kb on - strand, within ABZR87_RS14115 at 2981.265 kb on - strand, within ABZR87_RS14115 at 2981.409 kb on + strand at 2981.595 kb on - strand at 2981.625 kb on + strand at 2981.625 kb on + strand at 2981.626 kb on - strand at 2981.626 kb on - strand at 2981.626 kb on - strand at 2981.701 kb on - strand at 2982.402 kb on + strand at 2982.403 kb on - strand at 2982.441 kb on - strand at 2982.441 kb on - strand at 2982.441 kb on - strand at 2982.443 kb on + strand at 2982.478 kb on + strand at 2982.483 kb on - strand at 2982.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 2,978,703 + -1.0 2,978,703 + -3.4 2,978,703 + -3.6 2,979,564 - +0.3 2,979,564 - +0.1 2,979,564 - +0.2 2,979,564 - -0.2 2,979,682 - +1.2 2,979,760 - +4.1 2,980,028 + ABZR87_RS14115 0.18 -3.0 2,980,622 + ABZR87_RS14115 0.49 -2.3 2,980,623 - ABZR87_RS14115 0.49 -2.2 2,980,623 - ABZR87_RS14115 0.49 -0.8 2,981,261 + ABZR87_RS14115 0.83 -3.8 2,981,262 - ABZR87_RS14115 0.83 -2.2 2,981,265 - ABZR87_RS14115 0.83 -2.6 2,981,409 + +1.2 2,981,595 - -1.4 2,981,625 + -0.3 2,981,625 + +0.2 2,981,626 - -1.4 2,981,626 - -0.5 2,981,626 - +0.2 2,981,701 - -0.3 2,982,402 + +0.2 2,982,403 - -0.4 2,982,441 - +1.8 2,982,441 - -0.0 2,982,441 - -0.4 2,982,443 + +0.2 2,982,478 + -2.7 2,982,483 - -1.2 2,982,483 - +1.0
Or see this region's nucleotide sequence