Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12600

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS12595 and ABZR87_RS12600 are separated by 67 nucleotidesABZR87_RS12600 and ABZR87_RS12605 overlap by 1 nucleotidesABZR87_RS12605 and ABZR87_RS12610 overlap by 4 nucleotides ABZR87_RS12595: ABZR87_RS12595 - amino acid permease, at 2,667,794 to 2,669,320 _RS12595 ABZR87_RS12600: ABZR87_RS12600 - ABC transporter ATP-binding protein, at 2,669,388 to 2,670,107 _RS12600 ABZR87_RS12605: ABZR87_RS12605 - ABC transporter ATP-binding protein, at 2,670,107 to 2,670,895 _RS12605 ABZR87_RS12610: ABZR87_RS12610 - branched-chain amino acid ABC transporter permease, at 2,670,892 to 2,672,226 _RS12610 Position (kb) 2669 2670 2671Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2668.432 kb on - strand, within ABZR87_RS12595at 2668.559 kb on + strand, within ABZR87_RS12595at 2668.559 kb on + strand, within ABZR87_RS12595at 2668.559 kb on + strand, within ABZR87_RS12595at 2668.559 kb on + strand, within ABZR87_RS12595at 2668.560 kb on - strand, within ABZR87_RS12595at 2668.560 kb on - strand, within ABZR87_RS12595at 2668.560 kb on - strand, within ABZR87_RS12595at 2668.598 kb on + strand, within ABZR87_RS12595at 2668.599 kb on - strand, within ABZR87_RS12595at 2668.751 kb on + strand, within ABZR87_RS12595at 2668.751 kb on + strand, within ABZR87_RS12595at 2668.751 kb on + strand, within ABZR87_RS12595at 2668.751 kb on + strand, within ABZR87_RS12595at 2668.752 kb on + strand, within ABZR87_RS12595at 2668.752 kb on - strand, within ABZR87_RS12595at 2668.752 kb on - strand, within ABZR87_RS12595at 2668.752 kb on - strand, within ABZR87_RS12595at 2668.752 kb on - strand, within ABZR87_RS12595at 2668.752 kb on - strand, within ABZR87_RS12595at 2668.755 kb on + strand, within ABZR87_RS12595at 2668.785 kb on + strand, within ABZR87_RS12595at 2668.785 kb on + strand, within ABZR87_RS12595at 2668.785 kb on + strand, within ABZR87_RS12595at 2668.785 kb on + strand, within ABZR87_RS12595at 2668.786 kb on - strand, within ABZR87_RS12595at 2668.786 kb on - strand, within ABZR87_RS12595at 2668.786 kb on - strand, within ABZR87_RS12595at 2668.913 kb on + strand, within ABZR87_RS12595at 2668.914 kb on - strand, within ABZR87_RS12595at 2668.930 kb on + strand, within ABZR87_RS12595at 2668.930 kb on + strand, within ABZR87_RS12595at 2669.036 kb on + strand, within ABZR87_RS12595at 2669.036 kb on + strand, within ABZR87_RS12595at 2669.162 kb on + strand, within ABZR87_RS12595at 2669.202 kb on - strandat 2669.234 kb on + strandat 2669.328 kb on - strandat 2669.363 kb on + strandat 2669.389 kb on + strandat 2669.479 kb on + strand, within ABZR87_RS12600at 2669.480 kb on - strand, within ABZR87_RS12600at 2669.480 kb on - strand, within ABZR87_RS12600at 2669.480 kb on - strand, within ABZR87_RS12600at 2669.534 kb on - strand, within ABZR87_RS12600at 2669.740 kb on + strand, within ABZR87_RS12600at 2669.741 kb on - strand, within ABZR87_RS12600at 2669.741 kb on - strand, within ABZR87_RS12600at 2669.741 kb on - strand, within ABZR87_RS12600at 2669.835 kb on - strand, within ABZR87_RS12600at 2669.854 kb on + strand, within ABZR87_RS12600at 2669.855 kb on - strand, within ABZR87_RS12600at 2670.059 kb on - strandat 2670.096 kb on - strandat 2670.147 kb on + strandat 2670.148 kb on - strandat 2670.427 kb on - strand, within ABZR87_RS12605at 2670.540 kb on + strand, within ABZR87_RS12605at 2670.540 kb on + strand, within ABZR87_RS12605at 2670.541 kb on - strand, within ABZR87_RS12605at 2670.541 kb on - strand, within ABZR87_RS12605at 2670.541 kb on - strand, within ABZR87_RS12605at 2670.546 kb on + strand, within ABZR87_RS12605at 2670.547 kb on - strand, within ABZR87_RS12605at 2671.076 kb on + strand, within ABZR87_RS12610at 2671.077 kb on - strand, within ABZR87_RS12610

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,668,432 - ABZR87_RS12595 0.42 +0.2
2,668,559 + ABZR87_RS12595 0.50 +1.4
2,668,559 + ABZR87_RS12595 0.50 +0.9
2,668,559 + ABZR87_RS12595 0.50 +0.7
2,668,559 + ABZR87_RS12595 0.50 +0.7
2,668,560 - ABZR87_RS12595 0.50 +0.3
2,668,560 - ABZR87_RS12595 0.50 +2.3
2,668,560 - ABZR87_RS12595 0.50 +1.4
2,668,598 + ABZR87_RS12595 0.53 +1.1
2,668,599 - ABZR87_RS12595 0.53 +0.4
2,668,751 + ABZR87_RS12595 0.63 +1.0
2,668,751 + ABZR87_RS12595 0.63 +0.7
2,668,751 + ABZR87_RS12595 0.63 +0.6
2,668,751 + ABZR87_RS12595 0.63 +0.8
2,668,752 + ABZR87_RS12595 0.63 -1.0
2,668,752 - ABZR87_RS12595 0.63 +1.9
2,668,752 - ABZR87_RS12595 0.63 +0.4
2,668,752 - ABZR87_RS12595 0.63 +0.7
2,668,752 - ABZR87_RS12595 0.63 +1.4
2,668,752 - ABZR87_RS12595 0.63 +0.9
2,668,755 + ABZR87_RS12595 0.63 +1.1
2,668,785 + ABZR87_RS12595 0.65 +2.5
2,668,785 + ABZR87_RS12595 0.65 +2.5
2,668,785 + ABZR87_RS12595 0.65 +1.4
2,668,785 + ABZR87_RS12595 0.65 +2.1
2,668,786 - ABZR87_RS12595 0.65 -2.0
2,668,786 - ABZR87_RS12595 0.65 +0.5
2,668,786 - ABZR87_RS12595 0.65 +0.8
2,668,913 + ABZR87_RS12595 0.73 +1.0
2,668,914 - ABZR87_RS12595 0.73 +1.0
2,668,930 + ABZR87_RS12595 0.74 +1.1
2,668,930 + ABZR87_RS12595 0.74 +1.4
2,669,036 + ABZR87_RS12595 0.81 +0.2
2,669,036 + ABZR87_RS12595 0.81 +0.5
2,669,162 + ABZR87_RS12595 0.90 +0.9
2,669,202 - +2.1
2,669,234 + +1.0
2,669,328 - +1.2
2,669,363 + +0.3
2,669,389 + +0.8
2,669,479 + ABZR87_RS12600 0.13 -0.7
2,669,480 - ABZR87_RS12600 0.13 -1.0
2,669,480 - ABZR87_RS12600 0.13 -0.5
2,669,480 - ABZR87_RS12600 0.13 -2.6
2,669,534 - ABZR87_RS12600 0.20 +0.5
2,669,740 + ABZR87_RS12600 0.49 -0.2
2,669,741 - ABZR87_RS12600 0.49 -0.6
2,669,741 - ABZR87_RS12600 0.49 +0.8
2,669,741 - ABZR87_RS12600 0.49 -1.2
2,669,835 - ABZR87_RS12600 0.62 -0.7
2,669,854 + ABZR87_RS12600 0.65 -0.1
2,669,855 - ABZR87_RS12600 0.65 +1.0
2,670,059 - -0.4
2,670,096 - +0.7
2,670,147 + +1.6
2,670,148 - -4.1
2,670,427 - ABZR87_RS12605 0.41 -0.1
2,670,540 + ABZR87_RS12605 0.55 -0.5
2,670,540 + ABZR87_RS12605 0.55 -0.6
2,670,541 - ABZR87_RS12605 0.55 +0.8
2,670,541 - ABZR87_RS12605 0.55 +0.1
2,670,541 - ABZR87_RS12605 0.55 +1.2
2,670,546 + ABZR87_RS12605 0.56 -0.9
2,670,547 - ABZR87_RS12605 0.56 +0.0
2,671,076 + ABZR87_RS12610 0.14 +0.4
2,671,077 - ABZR87_RS12610 0.14 +0.7

Or see this region's nucleotide sequence