Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11655

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11645 and ABZR87_RS11650 overlap by 4 nucleotidesABZR87_RS11650 and ABZR87_RS11655 overlap by 4 nucleotidesABZR87_RS11655 and ABZR87_RS11660 are separated by 31 nucleotides ABZR87_RS11645: ABZR87_RS11645 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 2,467,904 to 2,468,641 _RS11645 ABZR87_RS11650: ABZR87_RS11650 - ribosomal protein S18-alanine N-acetyltransferase, at 2,468,638 to 2,469,165 _RS11650 ABZR87_RS11655: ABZR87_RS11655 - uracil-DNA glycosylase, at 2,469,162 to 2,469,968 _RS11655 ABZR87_RS11660: ABZR87_RS11660 - lysophospholipid transporter LplT, at 2,470,000 to 2,471,316 _RS11660 Position (kb) 2469 2470Strain fitness (log2 ratio) -2 -1 0 1at 2469.040 kb on + strand, within ABZR87_RS11650at 2469.040 kb on + strand, within ABZR87_RS11650at 2469.040 kb on + strand, within ABZR87_RS11650at 2469.040 kb on + strand, within ABZR87_RS11650at 2469.041 kb on - strand, within ABZR87_RS11650at 2469.082 kb on + strand, within ABZR87_RS11650at 2469.082 kb on + strand, within ABZR87_RS11650at 2469.085 kb on + strand, within ABZR87_RS11650at 2469.868 kb on - strand, within ABZR87_RS11655at 2469.966 kb on + strandat 2470.391 kb on + strand, within ABZR87_RS11660

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,469,040 + ABZR87_RS11650 0.76 +1.6
2,469,040 + ABZR87_RS11650 0.76 -1.1
2,469,040 + ABZR87_RS11650 0.76 -2.4
2,469,040 + ABZR87_RS11650 0.76 -0.8
2,469,041 - ABZR87_RS11650 0.76 +0.0
2,469,082 + ABZR87_RS11650 0.84 -0.1
2,469,082 + ABZR87_RS11650 0.84 -0.8
2,469,085 + ABZR87_RS11650 0.85 +0.0
2,469,868 - ABZR87_RS11655 0.87 -0.6
2,469,966 + -1.3
2,470,391 + ABZR87_RS11660 0.30 -0.6

Or see this region's nucleotide sequence