Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10680

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10675 and ABZR87_RS10680 are separated by 308 nucleotidesABZR87_RS10680 and ABZR87_RS10685 are separated by 16 nucleotides ABZR87_RS10675: ABZR87_RS10675 - enoyl-ACP reductase FabI, at 2,258,651 to 2,259,445 _RS10675 ABZR87_RS10680: ABZR87_RS10680 - extracellular solute-binding protein, at 2,259,754 to 2,261,640 _RS10680 ABZR87_RS10685: ABZR87_RS10685 - microcin C ABC transporter permease YejB, at 2,261,657 to 2,262,709 _RS10685 Position (kb) 2259 2260 2261 2262Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 2259.457 kb on - strandat 2259.484 kb on - strandat 2259.484 kb on - strandat 2259.547 kb on - strandat 2259.547 kb on - strandat 2259.547 kb on - strandat 2259.547 kb on - strandat 2259.547 kb on - strandat 2259.547 kb on - strandat 2259.547 kb on - strandat 2259.562 kb on + strandat 2259.563 kb on - strandat 2259.676 kb on + strandat 2259.677 kb on - strandat 2259.711 kb on + strandat 2259.857 kb on - strandat 2259.872 kb on - strandat 2259.872 kb on - strandat 2259.898 kb on + strandat 2260.044 kb on + strand, within ABZR87_RS10680at 2260.044 kb on + strand, within ABZR87_RS10680at 2260.045 kb on - strand, within ABZR87_RS10680at 2260.189 kb on + strand, within ABZR87_RS10680at 2260.189 kb on + strand, within ABZR87_RS10680at 2260.189 kb on + strand, within ABZR87_RS10680at 2260.190 kb on - strand, within ABZR87_RS10680at 2260.190 kb on - strand, within ABZR87_RS10680at 2260.196 kb on - strand, within ABZR87_RS10680at 2260.196 kb on - strand, within ABZR87_RS10680at 2260.231 kb on + strand, within ABZR87_RS10680at 2260.456 kb on + strand, within ABZR87_RS10680at 2260.456 kb on + strand, within ABZR87_RS10680at 2260.457 kb on - strand, within ABZR87_RS10680at 2260.457 kb on - strand, within ABZR87_RS10680at 2260.457 kb on - strand, within ABZR87_RS10680at 2260.457 kb on - strand, within ABZR87_RS10680at 2260.492 kb on - strand, within ABZR87_RS10680at 2260.492 kb on - strand, within ABZR87_RS10680at 2260.513 kb on + strand, within ABZR87_RS10680at 2260.514 kb on - strand, within ABZR87_RS10680at 2260.514 kb on - strand, within ABZR87_RS10680at 2260.571 kb on - strand, within ABZR87_RS10680at 2260.571 kb on - strand, within ABZR87_RS10680at 2260.571 kb on - strand, within ABZR87_RS10680at 2260.571 kb on - strand, within ABZR87_RS10680at 2260.579 kb on + strand, within ABZR87_RS10680at 2260.579 kb on + strand, within ABZR87_RS10680at 2260.579 kb on + strand, within ABZR87_RS10680at 2260.579 kb on + strand, within ABZR87_RS10680at 2260.579 kb on + strand, within ABZR87_RS10680at 2260.579 kb on + strand, within ABZR87_RS10680at 2260.579 kb on + strand, within ABZR87_RS10680at 2260.580 kb on - strand, within ABZR87_RS10680at 2260.643 kb on - strand, within ABZR87_RS10680at 2260.669 kb on + strand, within ABZR87_RS10680at 2260.669 kb on + strand, within ABZR87_RS10680at 2260.670 kb on - strand, within ABZR87_RS10680at 2260.670 kb on - strand, within ABZR87_RS10680at 2260.670 kb on - strand, within ABZR87_RS10680at 2260.670 kb on - strand, within ABZR87_RS10680at 2260.670 kb on - strand, within ABZR87_RS10680at 2260.670 kb on - strand, within ABZR87_RS10680at 2260.670 kb on - strand, within ABZR87_RS10680at 2260.670 kb on - strand, within ABZR87_RS10680at 2260.846 kb on + strand, within ABZR87_RS10680at 2260.847 kb on - strand, within ABZR87_RS10680at 2260.847 kb on - strand, within ABZR87_RS10680at 2260.855 kb on + strand, within ABZR87_RS10680at 2260.873 kb on + strand, within ABZR87_RS10680at 2260.873 kb on + strand, within ABZR87_RS10680at 2260.873 kb on + strand, within ABZR87_RS10680at 2260.874 kb on - strand, within ABZR87_RS10680at 2260.874 kb on - strand, within ABZR87_RS10680at 2260.874 kb on - strand, within ABZR87_RS10680at 2260.874 kb on - strand, within ABZR87_RS10680at 2260.874 kb on - strand, within ABZR87_RS10680at 2260.874 kb on - strand, within ABZR87_RS10680at 2260.884 kb on + strand, within ABZR87_RS10680at 2261.080 kb on + strand, within ABZR87_RS10680at 2261.081 kb on - strand, within ABZR87_RS10680at 2261.081 kb on - strand, within ABZR87_RS10680at 2261.081 kb on - strand, within ABZR87_RS10680at 2261.174 kb on - strand, within ABZR87_RS10680at 2261.237 kb on - strand, within ABZR87_RS10680at 2261.485 kb on + strandat 2261.485 kb on + strandat 2261.486 kb on - strandat 2261.503 kb on + strandat 2261.527 kb on + strandat 2261.527 kb on + strandat 2261.527 kb on + strandat 2261.527 kb on + strandat 2261.528 kb on - strandat 2261.528 kb on - strandat 2261.545 kb on + strandat 2261.545 kb on + strandat 2261.563 kb on + strandat 2261.564 kb on - strandat 2261.564 kb on - strandat 2261.566 kb on + strandat 2261.566 kb on + strandat 2261.566 kb on + strandat 2261.570 kb on - strandat 2261.885 kb on + strand, within ABZR87_RS10685at 2261.885 kb on + strand, within ABZR87_RS10685at 2261.886 kb on - strand, within ABZR87_RS10685at 2261.886 kb on - strand, within ABZR87_RS10685at 2261.886 kb on - strand, within ABZR87_RS10685at 2261.915 kb on + strand, within ABZR87_RS10685at 2261.915 kb on + strand, within ABZR87_RS10685at 2261.915 kb on + strand, within ABZR87_RS10685at 2261.963 kb on + strand, within ABZR87_RS10685at 2261.963 kb on + strand, within ABZR87_RS10685at 2261.963 kb on + strand, within ABZR87_RS10685at 2261.964 kb on - strand, within ABZR87_RS10685at 2262.050 kb on + strand, within ABZR87_RS10685at 2262.050 kb on + strand, within ABZR87_RS10685at 2262.050 kb on + strand, within ABZR87_RS10685at 2262.050 kb on + strand, within ABZR87_RS10685at 2262.050 kb on + strand, within ABZR87_RS10685at 2262.051 kb on - strand, within ABZR87_RS10685at 2262.051 kb on - strand, within ABZR87_RS10685at 2262.057 kb on + strand, within ABZR87_RS10685at 2262.272 kb on - strand, within ABZR87_RS10685at 2262.278 kb on + strand, within ABZR87_RS10685at 2262.278 kb on + strand, within ABZR87_RS10685at 2262.383 kb on + strand, within ABZR87_RS10685at 2262.384 kb on - strand, within ABZR87_RS10685at 2262.384 kb on - strand, within ABZR87_RS10685at 2262.384 kb on - strand, within ABZR87_RS10685at 2262.400 kb on + strand, within ABZR87_RS10685at 2262.400 kb on + strand, within ABZR87_RS10685at 2262.563 kb on + strand, within ABZR87_RS10685at 2262.563 kb on + strand, within ABZR87_RS10685at 2262.563 kb on + strand, within ABZR87_RS10685at 2262.564 kb on - strand, within ABZR87_RS10685at 2262.564 kb on - strand, within ABZR87_RS10685at 2262.611 kb on + strandat 2262.612 kb on - strandat 2262.612 kb on - strandat 2262.612 kb on - strandat 2262.612 kb on - strandat 2262.612 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,259,457 - +0.5
2,259,484 - -0.4
2,259,484 - +1.4
2,259,547 - +1.0
2,259,547 - +1.1
2,259,547 - +1.2
2,259,547 - +1.7
2,259,547 - +0.6
2,259,547 - +0.6
2,259,547 - +0.6
2,259,562 + -2.7
2,259,563 - +1.2
2,259,676 + -3.3
2,259,677 - +2.7
2,259,711 + -3.4
2,259,857 - +4.4
2,259,872 - +4.7
2,259,872 - +4.5
2,259,898 + +3.2
2,260,044 + ABZR87_RS10680 0.15 +4.5
2,260,044 + ABZR87_RS10680 0.15 +3.8
2,260,045 - ABZR87_RS10680 0.15 +2.4
2,260,189 + ABZR87_RS10680 0.23 +4.1
2,260,189 + ABZR87_RS10680 0.23 +4.4
2,260,189 + ABZR87_RS10680 0.23 +3.5
2,260,190 - ABZR87_RS10680 0.23 +2.8
2,260,190 - ABZR87_RS10680 0.23 +3.2
2,260,196 - ABZR87_RS10680 0.23 +4.2
2,260,196 - ABZR87_RS10680 0.23 +4.2
2,260,231 + ABZR87_RS10680 0.25 +6.8
2,260,456 + ABZR87_RS10680 0.37 +3.5
2,260,456 + ABZR87_RS10680 0.37 +3.3
2,260,457 - ABZR87_RS10680 0.37 +3.8
2,260,457 - ABZR87_RS10680 0.37 +3.3
2,260,457 - ABZR87_RS10680 0.37 +4.4
2,260,457 - ABZR87_RS10680 0.37 +4.0
2,260,492 - ABZR87_RS10680 0.39 +5.5
2,260,492 - ABZR87_RS10680 0.39 +4.2
2,260,513 + ABZR87_RS10680 0.40 +5.0
2,260,514 - ABZR87_RS10680 0.40 +4.6
2,260,514 - ABZR87_RS10680 0.40 +4.3
2,260,571 - ABZR87_RS10680 0.43 +4.3
2,260,571 - ABZR87_RS10680 0.43 +4.5
2,260,571 - ABZR87_RS10680 0.43 +4.4
2,260,571 - ABZR87_RS10680 0.43 +5.3
2,260,579 + ABZR87_RS10680 0.44 +3.6
2,260,579 + ABZR87_RS10680 0.44 +2.9
2,260,579 + ABZR87_RS10680 0.44 +4.2
2,260,579 + ABZR87_RS10680 0.44 +3.8
2,260,579 + ABZR87_RS10680 0.44 +3.7
2,260,579 + ABZR87_RS10680 0.44 +4.8
2,260,579 + ABZR87_RS10680 0.44 +3.4
2,260,580 - ABZR87_RS10680 0.44 +3.6
2,260,643 - ABZR87_RS10680 0.47 +4.0
2,260,669 + ABZR87_RS10680 0.48 +3.9
2,260,669 + ABZR87_RS10680 0.48 +4.1
2,260,670 - ABZR87_RS10680 0.49 +2.7
2,260,670 - ABZR87_RS10680 0.49 +3.1
2,260,670 - ABZR87_RS10680 0.49 +4.8
2,260,670 - ABZR87_RS10680 0.49 +3.9
2,260,670 - ABZR87_RS10680 0.49 +3.9
2,260,670 - ABZR87_RS10680 0.49 +3.9
2,260,670 - ABZR87_RS10680 0.49 +6.2
2,260,670 - ABZR87_RS10680 0.49 +3.6
2,260,846 + ABZR87_RS10680 0.58 +3.8
2,260,847 - ABZR87_RS10680 0.58 +4.6
2,260,847 - ABZR87_RS10680 0.58 +4.1
2,260,855 + ABZR87_RS10680 0.58 +3.9
2,260,873 + ABZR87_RS10680 0.59 +4.4
2,260,873 + ABZR87_RS10680 0.59 +5.9
2,260,873 + ABZR87_RS10680 0.59 +4.4
2,260,874 - ABZR87_RS10680 0.59 +3.9
2,260,874 - ABZR87_RS10680 0.59 +3.9
2,260,874 - ABZR87_RS10680 0.59 +3.5
2,260,874 - ABZR87_RS10680 0.59 +4.6
2,260,874 - ABZR87_RS10680 0.59 +3.9
2,260,874 - ABZR87_RS10680 0.59 +4.6
2,260,884 + ABZR87_RS10680 0.60 +3.6
2,261,080 + ABZR87_RS10680 0.70 +5.1
2,261,081 - ABZR87_RS10680 0.70 +4.2
2,261,081 - ABZR87_RS10680 0.70 +4.9
2,261,081 - ABZR87_RS10680 0.70 +4.6
2,261,174 - ABZR87_RS10680 0.75 +3.5
2,261,237 - ABZR87_RS10680 0.79 +3.5
2,261,485 + +4.0
2,261,485 + +4.3
2,261,486 - +3.8
2,261,503 + +3.6
2,261,527 + +4.3
2,261,527 + +3.7
2,261,527 + +2.6
2,261,527 + +4.0
2,261,528 - +4.3
2,261,528 - +3.7
2,261,545 + +4.1
2,261,545 + +4.5
2,261,563 + +4.2
2,261,564 - +4.4
2,261,564 - +4.6
2,261,566 + +4.1
2,261,566 + +4.5
2,261,566 + +3.3
2,261,570 - +3.9
2,261,885 + ABZR87_RS10685 0.22 +5.4
2,261,885 + ABZR87_RS10685 0.22 +4.1
2,261,886 - ABZR87_RS10685 0.22 +4.8
2,261,886 - ABZR87_RS10685 0.22 +4.1
2,261,886 - ABZR87_RS10685 0.22 +4.3
2,261,915 + ABZR87_RS10685 0.25 +5.6
2,261,915 + ABZR87_RS10685 0.25 +5.0
2,261,915 + ABZR87_RS10685 0.25 +3.9
2,261,963 + ABZR87_RS10685 0.29 +4.9
2,261,963 + ABZR87_RS10685 0.29 +4.3
2,261,963 + ABZR87_RS10685 0.29 +3.5
2,261,964 - ABZR87_RS10685 0.29 +4.0
2,262,050 + ABZR87_RS10685 0.37 +3.6
2,262,050 + ABZR87_RS10685 0.37 +4.5
2,262,050 + ABZR87_RS10685 0.37 +5.2
2,262,050 + ABZR87_RS10685 0.37 +4.8
2,262,050 + ABZR87_RS10685 0.37 +4.4
2,262,051 - ABZR87_RS10685 0.37 +2.6
2,262,051 - ABZR87_RS10685 0.37 +4.5
2,262,057 + ABZR87_RS10685 0.38 +4.4
2,262,272 - ABZR87_RS10685 0.58 +4.7
2,262,278 + ABZR87_RS10685 0.59 +3.3
2,262,278 + ABZR87_RS10685 0.59 +4.4
2,262,383 + ABZR87_RS10685 0.69 +4.1
2,262,384 - ABZR87_RS10685 0.69 +4.0
2,262,384 - ABZR87_RS10685 0.69 +4.1
2,262,384 - ABZR87_RS10685 0.69 +4.3
2,262,400 + ABZR87_RS10685 0.71 +3.7
2,262,400 + ABZR87_RS10685 0.71 +3.8
2,262,563 + ABZR87_RS10685 0.86 +3.8
2,262,563 + ABZR87_RS10685 0.86 +4.0
2,262,563 + ABZR87_RS10685 0.86 +3.5
2,262,564 - ABZR87_RS10685 0.86 +4.6
2,262,564 - ABZR87_RS10685 0.86 +4.3
2,262,611 + +3.8
2,262,612 - +3.3
2,262,612 - +4.0
2,262,612 - +3.7
2,262,612 - +3.7
2,262,612 - +3.7

Or see this region's nucleotide sequence