Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10520

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10515 and ABZR87_RS10520 are separated by 149 nucleotidesABZR87_RS10520 and ABZR87_RS10525 are separated by 13 nucleotidesABZR87_RS10525 and ABZR87_RS10530 are separated by 66 nucleotides ABZR87_RS10515: ABZR87_RS10515 - NAD(P)/FAD-dependent oxidoreductase, at 2,225,413 to 2,226,492 _RS10515 ABZR87_RS10520: ABZR87_RS10520 - 3',5'-nucleoside bisphosphate phosphatase, at 2,226,642 to 2,227,502 _RS10520 ABZR87_RS10525: ABZR87_RS10525 - L-threonylcarbamoyladenylate synthase, at 2,227,516 to 2,228,139 _RS10525 ABZR87_RS10530: ABZR87_RS10530 - site-2 protease family protein, at 2,228,206 to 2,228,871 _RS10530 Position (kb) 2226 2227 2228Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2225.702 kb on + strand, within ABZR87_RS10515at 2225.702 kb on + strand, within ABZR87_RS10515at 2225.702 kb on + strand, within ABZR87_RS10515at 2225.703 kb on - strand, within ABZR87_RS10515at 2225.703 kb on - strand, within ABZR87_RS10515at 2225.703 kb on - strand, within ABZR87_RS10515at 2225.703 kb on - strand, within ABZR87_RS10515at 2225.703 kb on - strand, within ABZR87_RS10515at 2225.704 kb on + strand, within ABZR87_RS10515at 2225.704 kb on + strand, within ABZR87_RS10515at 2225.704 kb on + strand, within ABZR87_RS10515at 2225.705 kb on - strand, within ABZR87_RS10515at 2226.017 kb on + strand, within ABZR87_RS10515at 2226.017 kb on + strand, within ABZR87_RS10515at 2226.018 kb on - strand, within ABZR87_RS10515at 2226.097 kb on - strand, within ABZR87_RS10515at 2226.215 kb on + strand, within ABZR87_RS10515at 2226.216 kb on - strand, within ABZR87_RS10515at 2226.216 kb on - strand, within ABZR87_RS10515at 2226.216 kb on - strand, within ABZR87_RS10515at 2226.216 kb on - strand, within ABZR87_RS10515at 2226.216 kb on - strand, within ABZR87_RS10515at 2226.293 kb on + strand, within ABZR87_RS10515at 2226.293 kb on + strand, within ABZR87_RS10515at 2226.294 kb on - strand, within ABZR87_RS10515at 2226.294 kb on - strand, within ABZR87_RS10515at 2226.294 kb on - strand, within ABZR87_RS10515at 2226.294 kb on - strand, within ABZR87_RS10515at 2226.438 kb on + strandat 2226.438 kb on + strandat 2226.438 kb on + strandat 2226.438 kb on + strandat 2226.439 kb on - strandat 2226.439 kb on - strandat 2226.439 kb on - strandat 2226.439 kb on - strandat 2226.526 kb on + strandat 2226.526 kb on + strandat 2226.526 kb on + strandat 2226.526 kb on + strandat 2226.527 kb on - strandat 2226.527 kb on - strandat 2226.527 kb on - strandat 2226.527 kb on - strandat 2226.527 kb on - strandat 2226.528 kb on + strandat 2226.528 kb on + strandat 2226.528 kb on + strandat 2226.528 kb on + strandat 2226.528 kb on + strandat 2226.528 kb on + strandat 2226.528 kb on + strandat 2226.529 kb on - strandat 2226.529 kb on - strandat 2226.529 kb on - strandat 2226.630 kb on + strandat 2226.631 kb on - strandat 2226.840 kb on + strand, within ABZR87_RS10520at 2226.840 kb on + strand, within ABZR87_RS10520at 2226.841 kb on - strand, within ABZR87_RS10520at 2227.020 kb on + strand, within ABZR87_RS10520at 2227.020 kb on + strand, within ABZR87_RS10520at 2227.021 kb on - strand, within ABZR87_RS10520at 2227.021 kb on - strand, within ABZR87_RS10520at 2227.135 kb on - strand, within ABZR87_RS10520at 2227.158 kb on + strand, within ABZR87_RS10520at 2227.159 kb on - strand, within ABZR87_RS10520at 2227.256 kb on - strand, within ABZR87_RS10520at 2227.337 kb on + strand, within ABZR87_RS10520at 2227.337 kb on + strand, within ABZR87_RS10520at 2227.338 kb on - strand, within ABZR87_RS10520at 2227.338 kb on - strand, within ABZR87_RS10520at 2227.338 kb on - strand, within ABZR87_RS10520at 2227.350 kb on + strand, within ABZR87_RS10520at 2227.350 kb on + strand, within ABZR87_RS10520at 2227.351 kb on - strand, within ABZR87_RS10520at 2227.359 kb on + strand, within ABZR87_RS10520at 2227.360 kb on - strand, within ABZR87_RS10520at 2227.360 kb on - strand, within ABZR87_RS10520at 2227.360 kb on - strand, within ABZR87_RS10520at 2228.059 kb on - strand, within ABZR87_RS10525at 2228.059 kb on - strand, within ABZR87_RS10525at 2228.137 kb on + strandat 2228.137 kb on + strandat 2228.137 kb on + strandat 2228.138 kb on - strandat 2228.138 kb on - strandat 2228.160 kb on + strandat 2228.191 kb on + strandat 2228.191 kb on + strandat 2228.192 kb on - strandat 2228.192 kb on - strandat 2228.192 kb on - strandat 2228.192 kb on - strandat 2228.192 kb on - strandat 2228.196 kb on + strandat 2228.323 kb on + strand, within ABZR87_RS10530at 2228.323 kb on + strand, within ABZR87_RS10530at 2228.401 kb on + strand, within ABZR87_RS10530at 2228.401 kb on + strand, within ABZR87_RS10530

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,225,702 + ABZR87_RS10515 0.27 -1.5
2,225,702 + ABZR87_RS10515 0.27 +0.1
2,225,702 + ABZR87_RS10515 0.27 +0.5
2,225,703 - ABZR87_RS10515 0.27 -1.3
2,225,703 - ABZR87_RS10515 0.27 -0.8
2,225,703 - ABZR87_RS10515 0.27 -0.0
2,225,703 - ABZR87_RS10515 0.27 +0.5
2,225,703 - ABZR87_RS10515 0.27 -0.2
2,225,704 + ABZR87_RS10515 0.27 -0.4
2,225,704 + ABZR87_RS10515 0.27 -0.4
2,225,704 + ABZR87_RS10515 0.27 +0.0
2,225,705 - ABZR87_RS10515 0.27 +0.5
2,226,017 + ABZR87_RS10515 0.56 -1.1
2,226,017 + ABZR87_RS10515 0.56 -1.0
2,226,018 - ABZR87_RS10515 0.56 -0.4
2,226,097 - ABZR87_RS10515 0.63 -1.4
2,226,215 + ABZR87_RS10515 0.74 -0.2
2,226,216 - ABZR87_RS10515 0.74 -0.8
2,226,216 - ABZR87_RS10515 0.74 +1.1
2,226,216 - ABZR87_RS10515 0.74 +0.0
2,226,216 - ABZR87_RS10515 0.74 +0.2
2,226,216 - ABZR87_RS10515 0.74 +0.9
2,226,293 + ABZR87_RS10515 0.81 +3.0
2,226,293 + ABZR87_RS10515 0.81 -1.8
2,226,294 - ABZR87_RS10515 0.82 -0.8
2,226,294 - ABZR87_RS10515 0.82 +0.5
2,226,294 - ABZR87_RS10515 0.82 -0.8
2,226,294 - ABZR87_RS10515 0.82 -1.2
2,226,438 + -1.5
2,226,438 + +0.1
2,226,438 + -0.6
2,226,438 + +0.3
2,226,439 - +1.4
2,226,439 - -0.4
2,226,439 - +0.3
2,226,439 - +1.1
2,226,526 + +0.1
2,226,526 + +0.0
2,226,526 + -0.5
2,226,526 + +0.6
2,226,527 - +0.0
2,226,527 - +0.7
2,226,527 - +0.1
2,226,527 - +0.5
2,226,527 - -0.4
2,226,528 + +0.7
2,226,528 + -0.1
2,226,528 + +0.0
2,226,528 + -0.7
2,226,528 + -0.7
2,226,528 + -0.7
2,226,528 + +0.4
2,226,529 - -1.7
2,226,529 - +0.4
2,226,529 - -0.0
2,226,630 + +1.5
2,226,631 - +0.4
2,226,840 + ABZR87_RS10520 0.23 +1.2
2,226,840 + ABZR87_RS10520 0.23 -2.0
2,226,841 - ABZR87_RS10520 0.23 -2.8
2,227,020 + ABZR87_RS10520 0.44 +0.8
2,227,020 + ABZR87_RS10520 0.44 -1.4
2,227,021 - ABZR87_RS10520 0.44 -1.0
2,227,021 - ABZR87_RS10520 0.44 -2.1
2,227,135 - ABZR87_RS10520 0.57 -2.4
2,227,158 + ABZR87_RS10520 0.60 -0.4
2,227,159 - ABZR87_RS10520 0.60 -2.7
2,227,256 - ABZR87_RS10520 0.71 -2.8
2,227,337 + ABZR87_RS10520 0.81 -2.7
2,227,337 + ABZR87_RS10520 0.81 -0.7
2,227,338 - ABZR87_RS10520 0.81 -0.9
2,227,338 - ABZR87_RS10520 0.81 -1.3
2,227,338 - ABZR87_RS10520 0.81 -1.4
2,227,350 + ABZR87_RS10520 0.82 -1.7
2,227,350 + ABZR87_RS10520 0.82 +0.4
2,227,351 - ABZR87_RS10520 0.82 -1.4
2,227,359 + ABZR87_RS10520 0.83 -2.3
2,227,360 - ABZR87_RS10520 0.83 -1.4
2,227,360 - ABZR87_RS10520 0.83 -0.2
2,227,360 - ABZR87_RS10520 0.83 -2.0
2,228,059 - ABZR87_RS10525 0.87 -0.3
2,228,059 - ABZR87_RS10525 0.87 -2.9
2,228,137 + +1.1
2,228,137 + -0.2
2,228,137 + -0.5
2,228,138 - -0.1
2,228,138 - +0.4
2,228,160 + +1.1
2,228,191 + -1.4
2,228,191 + +0.4
2,228,192 - -1.9
2,228,192 - +1.0
2,228,192 - +2.3
2,228,192 - +0.9
2,228,192 - +0.2
2,228,196 + -0.8
2,228,323 + ABZR87_RS10530 0.18 -0.3
2,228,323 + ABZR87_RS10530 0.18 +0.7
2,228,401 + ABZR87_RS10530 0.29 +2.1
2,228,401 + ABZR87_RS10530 0.29 +0.5

Or see this region's nucleotide sequence