Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10295

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10290 and ABZR87_RS10295 are separated by 178 nucleotidesABZR87_RS10295 and ABZR87_RS10300 are separated by 34 nucleotidesABZR87_RS10300 and ABZR87_RS10305 are separated by 26 nucleotides ABZR87_RS10290: ABZR87_RS10290 - CHASE2 domain-containing protein, at 2,180,587 to 2,182,920 _RS10290 ABZR87_RS10295: ABZR87_RS10295 - hypothetical protein, at 2,183,099 to 2,183,299 _RS10295 ABZR87_RS10300: ABZR87_RS10300 - response regulator transcription factor, at 2,183,334 to 2,184,041 _RS10300 ABZR87_RS10305: ABZR87_RS10305 - GlsB/YeaQ/YmgE family stress response membrane protein, at 2,184,068 to 2,184,319 _RS10305 Position (kb) 2183 2184Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2182.802 kb on + strandat 2182.803 kb on - strandat 2182.994 kb on + strandat 2182.995 kb on - strandat 2183.076 kb on + strandat 2183.076 kb on + strandat 2183.077 kb on - strandat 2183.077 kb on - strandat 2183.077 kb on - strandat 2183.077 kb on - strandat 2183.077 kb on - strandat 2183.077 kb on - strandat 2183.098 kb on + strandat 2183.098 kb on + strandat 2183.098 kb on + strandat 2183.098 kb on + strandat 2183.099 kb on - strandat 2183.099 kb on - strandat 2183.099 kb on - strandat 2183.099 kb on - strandat 2183.099 kb on - strandat 2183.141 kb on + strand, within ABZR87_RS10295at 2183.141 kb on + strand, within ABZR87_RS10295at 2183.232 kb on + strand, within ABZR87_RS10295at 2183.232 kb on + strand, within ABZR87_RS10295at 2183.232 kb on + strand, within ABZR87_RS10295at 2183.232 kb on + strand, within ABZR87_RS10295at 2183.232 kb on + strand, within ABZR87_RS10295at 2183.232 kb on + strand, within ABZR87_RS10295at 2183.233 kb on - strand, within ABZR87_RS10295at 2183.233 kb on - strand, within ABZR87_RS10295at 2183.233 kb on - strand, within ABZR87_RS10295at 2183.233 kb on - strand, within ABZR87_RS10295at 2183.233 kb on - strand, within ABZR87_RS10295at 2183.566 kb on - strand, within ABZR87_RS10300at 2183.740 kb on - strand, within ABZR87_RS10300at 2183.901 kb on + strand, within ABZR87_RS10300at 2183.902 kb on - strand, within ABZR87_RS10300at 2183.988 kb on + strandat 2183.988 kb on + strandat 2183.988 kb on + strandat 2183.989 kb on - strandat 2184.082 kb on + strandat 2184.083 kb on - strandat 2184.083 kb on - strandat 2184.227 kb on + strand, within ABZR87_RS10305at 2184.227 kb on + strand, within ABZR87_RS10305at 2184.228 kb on - strand, within ABZR87_RS10305at 2184.228 kb on - strand, within ABZR87_RS10305at 2184.294 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,182,802 + -2.5
2,182,803 - +0.5
2,182,994 + +0.3
2,182,995 - +0.8
2,183,076 + -0.1
2,183,076 + +0.4
2,183,077 - +0.4
2,183,077 - -0.3
2,183,077 - +0.8
2,183,077 - +0.9
2,183,077 - +1.6
2,183,077 - -0.2
2,183,098 + -0.7
2,183,098 + -1.4
2,183,098 + -0.2
2,183,098 + +0.4
2,183,099 - +0.5
2,183,099 - +0.5
2,183,099 - -0.4
2,183,099 - -0.1
2,183,099 - -0.4
2,183,141 + ABZR87_RS10295 0.21 +2.8
2,183,141 + ABZR87_RS10295 0.21 -0.3
2,183,232 + ABZR87_RS10295 0.66 -2.7
2,183,232 + ABZR87_RS10295 0.66 -2.5
2,183,232 + ABZR87_RS10295 0.66 -1.1
2,183,232 + ABZR87_RS10295 0.66 -1.7
2,183,232 + ABZR87_RS10295 0.66 -1.8
2,183,232 + ABZR87_RS10295 0.66 -1.8
2,183,233 - ABZR87_RS10295 0.67 -0.1
2,183,233 - ABZR87_RS10295 0.67 -0.6
2,183,233 - ABZR87_RS10295 0.67 +0.6
2,183,233 - ABZR87_RS10295 0.67 -0.4
2,183,233 - ABZR87_RS10295 0.67 +0.4
2,183,566 - ABZR87_RS10300 0.33 -1.3
2,183,740 - ABZR87_RS10300 0.57 -1.0
2,183,901 + ABZR87_RS10300 0.80 -2.8
2,183,902 - ABZR87_RS10300 0.80 +0.3
2,183,988 + -0.6
2,183,988 + -0.2
2,183,988 + +0.1
2,183,989 - -0.8
2,184,082 + -0.2
2,184,083 - +1.8
2,184,083 - +0.1
2,184,227 + ABZR87_RS10305 0.63 -0.2
2,184,227 + ABZR87_RS10305 0.63 -0.4
2,184,228 - ABZR87_RS10305 0.63 -0.1
2,184,228 - ABZR87_RS10305 0.63 +0.0
2,184,294 - -2.7

Or see this region's nucleotide sequence