Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10290 and ABZR87_RS10295 are separated by 178 nucleotides ABZR87_RS10295 and ABZR87_RS10300 are separated by 34 nucleotides ABZR87_RS10300 and ABZR87_RS10305 are separated by 26 nucleotides
ABZR87_RS10290: ABZR87_RS10290 - CHASE2 domain-containing protein, at 2,180,587 to 2,182,920
_RS10290
ABZR87_RS10295: ABZR87_RS10295 - hypothetical protein, at 2,183,099 to 2,183,299
_RS10295
ABZR87_RS10300: ABZR87_RS10300 - response regulator transcription factor, at 2,183,334 to 2,184,041
_RS10300
ABZR87_RS10305: ABZR87_RS10305 - GlsB/YeaQ/YmgE family stress response membrane protein, at 2,184,068 to 2,184,319
_RS10305
Position (kb)
2183
2184 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2182.802 kb on + strand at 2182.803 kb on - strand at 2182.994 kb on + strand at 2182.995 kb on - strand at 2183.076 kb on + strand at 2183.076 kb on + strand at 2183.077 kb on - strand at 2183.077 kb on - strand at 2183.077 kb on - strand at 2183.077 kb on - strand at 2183.077 kb on - strand at 2183.077 kb on - strand at 2183.098 kb on + strand at 2183.098 kb on + strand at 2183.098 kb on + strand at 2183.098 kb on + strand at 2183.099 kb on - strand at 2183.099 kb on - strand at 2183.099 kb on - strand at 2183.099 kb on - strand at 2183.099 kb on - strand at 2183.141 kb on + strand, within ABZR87_RS10295 at 2183.141 kb on + strand, within ABZR87_RS10295 at 2183.232 kb on + strand, within ABZR87_RS10295 at 2183.232 kb on + strand, within ABZR87_RS10295 at 2183.232 kb on + strand, within ABZR87_RS10295 at 2183.232 kb on + strand, within ABZR87_RS10295 at 2183.232 kb on + strand, within ABZR87_RS10295 at 2183.232 kb on + strand, within ABZR87_RS10295 at 2183.233 kb on - strand, within ABZR87_RS10295 at 2183.233 kb on - strand, within ABZR87_RS10295 at 2183.233 kb on - strand, within ABZR87_RS10295 at 2183.233 kb on - strand, within ABZR87_RS10295 at 2183.233 kb on - strand, within ABZR87_RS10295 at 2183.566 kb on - strand, within ABZR87_RS10300 at 2183.740 kb on - strand, within ABZR87_RS10300 at 2183.901 kb on + strand, within ABZR87_RS10300 at 2183.902 kb on - strand, within ABZR87_RS10300 at 2183.988 kb on + strand at 2183.988 kb on + strand at 2183.988 kb on + strand at 2183.989 kb on - strand at 2184.082 kb on + strand at 2184.083 kb on - strand at 2184.083 kb on - strand at 2184.227 kb on + strand, within ABZR87_RS10305 at 2184.227 kb on + strand, within ABZR87_RS10305 at 2184.228 kb on - strand, within ABZR87_RS10305 at 2184.228 kb on - strand, within ABZR87_RS10305 at 2184.294 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 2,182,802 + -2.5 2,182,803 - +0.5 2,182,994 + +0.3 2,182,995 - +0.8 2,183,076 + -0.1 2,183,076 + +0.4 2,183,077 - +0.4 2,183,077 - -0.3 2,183,077 - +0.8 2,183,077 - +0.9 2,183,077 - +1.6 2,183,077 - -0.2 2,183,098 + -0.7 2,183,098 + -1.4 2,183,098 + -0.2 2,183,098 + +0.4 2,183,099 - +0.5 2,183,099 - +0.5 2,183,099 - -0.4 2,183,099 - -0.1 2,183,099 - -0.4 2,183,141 + ABZR87_RS10295 0.21 +2.8 2,183,141 + ABZR87_RS10295 0.21 -0.3 2,183,232 + ABZR87_RS10295 0.66 -2.7 2,183,232 + ABZR87_RS10295 0.66 -2.5 2,183,232 + ABZR87_RS10295 0.66 -1.1 2,183,232 + ABZR87_RS10295 0.66 -1.7 2,183,232 + ABZR87_RS10295 0.66 -1.8 2,183,232 + ABZR87_RS10295 0.66 -1.8 2,183,233 - ABZR87_RS10295 0.67 -0.1 2,183,233 - ABZR87_RS10295 0.67 -0.6 2,183,233 - ABZR87_RS10295 0.67 +0.6 2,183,233 - ABZR87_RS10295 0.67 -0.4 2,183,233 - ABZR87_RS10295 0.67 +0.4 2,183,566 - ABZR87_RS10300 0.33 -1.3 2,183,740 - ABZR87_RS10300 0.57 -1.0 2,183,901 + ABZR87_RS10300 0.80 -2.8 2,183,902 - ABZR87_RS10300 0.80 +0.3 2,183,988 + -0.6 2,183,988 + -0.2 2,183,988 + +0.1 2,183,989 - -0.8 2,184,082 + -0.2 2,184,083 - +1.8 2,184,083 - +0.1 2,184,227 + ABZR87_RS10305 0.63 -0.2 2,184,227 + ABZR87_RS10305 0.63 -0.4 2,184,228 - ABZR87_RS10305 0.63 -0.1 2,184,228 - ABZR87_RS10305 0.63 +0.0 2,184,294 - -2.7
Or see this region's nucleotide sequence