Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10155

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10145 and ABZR87_RS10150 are separated by 185 nucleotidesABZR87_RS10150 and ABZR87_RS10155 are separated by 113 nucleotidesABZR87_RS10155 and ABZR87_RS10160 are separated by 54 nucleotidesABZR87_RS10160 and ABZR87_RS10165 are separated by 335 nucleotides ABZR87_RS10145: ABZR87_RS10145 - 3-oxoacyl-ACP reductase FabG, at 2,154,294 to 2,155,043 _RS10145 ABZR87_RS10150: ABZR87_RS10150 - acyl carrier protein, at 2,155,229 to 2,155,468 _RS10150 ABZR87_RS10155: ABZR87_RS10155 - beta-ketoacyl-ACP synthase II, at 2,155,582 to 2,156,814 _RS10155 ABZR87_RS10160: ABZR87_RS10160 - hypothetical protein, at 2,156,869 to 2,157,078 _RS10160 ABZR87_RS10165: ABZR87_RS10165 - RNA polymerase sigma factor RpoE, at 2,157,414 to 2,158,013 _RS10165 Position (kb) 2155 2156 2157Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2156.817 kb on + strandat 2156.830 kb on + strandat 2156.830 kb on + strandat 2156.830 kb on + strandat 2156.831 kb on - strandat 2156.831 kb on - strandat 2156.831 kb on - strandat 2156.955 kb on + strand, within ABZR87_RS10160at 2156.956 kb on - strand, within ABZR87_RS10160at 2157.034 kb on + strand, within ABZR87_RS10160at 2157.034 kb on + strand, within ABZR87_RS10160at 2157.034 kb on + strand, within ABZR87_RS10160at 2157.034 kb on + strand, within ABZR87_RS10160at 2157.035 kb on - strand, within ABZR87_RS10160at 2157.174 kb on + strandat 2157.174 kb on + strandat 2157.175 kb on - strandat 2157.175 kb on - strandat 2157.175 kb on - strandat 2157.175 kb on - strandat 2157.282 kb on + strandat 2157.282 kb on + strandat 2157.283 kb on - strandat 2157.283 kb on - strandat 2157.283 kb on - strandat 2157.289 kb on + strandat 2157.290 kb on - strandat 2157.290 kb on - strandat 2157.290 kb on - strandat 2157.290 kb on - strandat 2157.290 kb on - strandat 2157.350 kb on + strandat 2157.351 kb on - strandat 2157.351 kb on - strandat 2157.359 kb on + strandat 2157.359 kb on + strandat 2157.360 kb on - strandat 2157.360 kb on - strandat 2157.393 kb on + strandat 2157.467 kb on + strandat 2157.467 kb on + strandat 2157.498 kb on + strand, within ABZR87_RS10165at 2157.498 kb on + strand, within ABZR87_RS10165at 2157.498 kb on + strand, within ABZR87_RS10165at 2157.498 kb on + strand, within ABZR87_RS10165at 2157.499 kb on - strand, within ABZR87_RS10165at 2157.578 kb on + strand, within ABZR87_RS10165at 2157.578 kb on + strand, within ABZR87_RS10165at 2157.579 kb on - strand, within ABZR87_RS10165at 2157.579 kb on - strand, within ABZR87_RS10165at 2157.579 kb on - strand, within ABZR87_RS10165at 2157.579 kb on - strand, within ABZR87_RS10165at 2157.598 kb on + strand, within ABZR87_RS10165at 2157.627 kb on + strand, within ABZR87_RS10165at 2157.628 kb on - strand, within ABZR87_RS10165at 2157.628 kb on - strand, within ABZR87_RS10165at 2157.628 kb on - strand, within ABZR87_RS10165at 2157.628 kb on - strand, within ABZR87_RS10165at 2157.628 kb on - strand, within ABZR87_RS10165at 2157.628 kb on - strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.629 kb on + strand, within ABZR87_RS10165at 2157.630 kb on - strand, within ABZR87_RS10165at 2157.630 kb on - strand, within ABZR87_RS10165at 2157.630 kb on - strand, within ABZR87_RS10165at 2157.630 kb on - strand, within ABZR87_RS10165at 2157.630 kb on - strand, within ABZR87_RS10165at 2157.640 kb on - strand, within ABZR87_RS10165at 2157.656 kb on + strand, within ABZR87_RS10165at 2157.657 kb on - strand, within ABZR87_RS10165at 2157.669 kb on + strand, within ABZR87_RS10165at 2157.669 kb on + strand, within ABZR87_RS10165at 2157.751 kb on + strand, within ABZR87_RS10165at 2157.751 kb on + strand, within ABZR87_RS10165at 2157.751 kb on + strand, within ABZR87_RS10165at 2157.751 kb on + strand, within ABZR87_RS10165at 2157.752 kb on - strand, within ABZR87_RS10165at 2157.754 kb on + strand, within ABZR87_RS10165at 2157.754 kb on + strand, within ABZR87_RS10165at 2157.767 kb on + strand, within ABZR87_RS10165at 2157.767 kb on + strand, within ABZR87_RS10165at 2157.768 kb on - strand, within ABZR87_RS10165at 2157.768 kb on - strand, within ABZR87_RS10165at 2157.768 kb on - strand, within ABZR87_RS10165

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,156,817 + +1.7
2,156,830 + +0.1
2,156,830 + -0.1
2,156,830 + -0.4
2,156,831 - +0.8
2,156,831 - -0.5
2,156,831 - +0.6
2,156,955 + ABZR87_RS10160 0.41 -0.2
2,156,956 - ABZR87_RS10160 0.41 +0.4
2,157,034 + ABZR87_RS10160 0.79 -0.2
2,157,034 + ABZR87_RS10160 0.79 -2.9
2,157,034 + ABZR87_RS10160 0.79 +0.2
2,157,034 + ABZR87_RS10160 0.79 -0.3
2,157,035 - ABZR87_RS10160 0.79 +0.4
2,157,174 + -0.3
2,157,174 + -0.2
2,157,175 - -1.3
2,157,175 - +0.2
2,157,175 - -1.2
2,157,175 - -0.4
2,157,282 + -0.4
2,157,282 + -1.9
2,157,283 - -1.2
2,157,283 - -2.3
2,157,283 - +0.4
2,157,289 + -1.3
2,157,290 - -0.6
2,157,290 - -1.8
2,157,290 - +0.5
2,157,290 - -1.8
2,157,290 - -3.3
2,157,350 + +1.2
2,157,351 - -2.1
2,157,351 - -2.5
2,157,359 + -2.4
2,157,359 + -2.5
2,157,360 - -0.2
2,157,360 - +1.2
2,157,393 + -0.4
2,157,467 + +0.4
2,157,467 + +0.3
2,157,498 + ABZR87_RS10165 0.14 +0.5
2,157,498 + ABZR87_RS10165 0.14 +1.5
2,157,498 + ABZR87_RS10165 0.14 +0.4
2,157,498 + ABZR87_RS10165 0.14 +0.8
2,157,499 - ABZR87_RS10165 0.14 +0.3
2,157,578 + ABZR87_RS10165 0.27 +0.9
2,157,578 + ABZR87_RS10165 0.27 +1.3
2,157,579 - ABZR87_RS10165 0.28 +1.4
2,157,579 - ABZR87_RS10165 0.28 +0.4
2,157,579 - ABZR87_RS10165 0.28 +0.8
2,157,579 - ABZR87_RS10165 0.28 +1.8
2,157,598 + ABZR87_RS10165 0.31 +1.0
2,157,627 + ABZR87_RS10165 0.35 +0.4
2,157,628 - ABZR87_RS10165 0.36 +0.5
2,157,628 - ABZR87_RS10165 0.36 +0.8
2,157,628 - ABZR87_RS10165 0.36 +1.1
2,157,628 - ABZR87_RS10165 0.36 +2.3
2,157,628 - ABZR87_RS10165 0.36 +1.1
2,157,628 - ABZR87_RS10165 0.36 +0.6
2,157,629 + ABZR87_RS10165 0.36 +0.6
2,157,629 + ABZR87_RS10165 0.36 +0.1
2,157,629 + ABZR87_RS10165 0.36 +0.7
2,157,629 + ABZR87_RS10165 0.36 -0.4
2,157,629 + ABZR87_RS10165 0.36 +0.6
2,157,629 + ABZR87_RS10165 0.36 +0.2
2,157,629 + ABZR87_RS10165 0.36 +1.3
2,157,630 - ABZR87_RS10165 0.36 +1.9
2,157,630 - ABZR87_RS10165 0.36 +3.4
2,157,630 - ABZR87_RS10165 0.36 +2.1
2,157,630 - ABZR87_RS10165 0.36 +2.4
2,157,630 - ABZR87_RS10165 0.36 -0.2
2,157,640 - ABZR87_RS10165 0.38 +0.2
2,157,656 + ABZR87_RS10165 0.40 +1.2
2,157,657 - ABZR87_RS10165 0.41 +0.2
2,157,669 + ABZR87_RS10165 0.42 +1.8
2,157,669 + ABZR87_RS10165 0.42 +0.6
2,157,751 + ABZR87_RS10165 0.56 +0.6
2,157,751 + ABZR87_RS10165 0.56 -0.4
2,157,751 + ABZR87_RS10165 0.56 +1.1
2,157,751 + ABZR87_RS10165 0.56 -1.4
2,157,752 - ABZR87_RS10165 0.56 +0.1
2,157,754 + ABZR87_RS10165 0.57 -3.4
2,157,754 + ABZR87_RS10165 0.57 +0.6
2,157,767 + ABZR87_RS10165 0.59 +0.5
2,157,767 + ABZR87_RS10165 0.59 -2.1
2,157,768 - ABZR87_RS10165 0.59 +2.2
2,157,768 - ABZR87_RS10165 0.59 +1.4
2,157,768 - ABZR87_RS10165 0.59 +1.4

Or see this region's nucleotide sequence