Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09975

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09970 and ABZR87_RS09975 are separated by 423 nucleotidesABZR87_RS09975 and ABZR87_RS09980 are separated by 74 nucleotides ABZR87_RS09970: ABZR87_RS09970 - sugar ABC transporter substrate-binding protein, at 2,119,740 to 2,120,699 _RS09970 ABZR87_RS09975: ABZR87_RS09975 - Fe-S cluster assembly transcriptional regulator IscR, at 2,121,123 to 2,121,716 _RS09975 ABZR87_RS09980: ABZR87_RS09980 - IscS subfamily cysteine desulfurase, at 2,121,791 to 2,123,008 _RS09980 Position (kb) 2121 2122Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2120.282 kb on + strand, within ABZR87_RS09970at 2120.384 kb on + strand, within ABZR87_RS09970at 2120.384 kb on + strand, within ABZR87_RS09970at 2120.384 kb on + strand, within ABZR87_RS09970at 2120.384 kb on + strand, within ABZR87_RS09970at 2120.385 kb on - strand, within ABZR87_RS09970at 2120.501 kb on - strand, within ABZR87_RS09970at 2120.695 kb on + strandat 2120.779 kb on - strandat 2120.875 kb on + strandat 2120.876 kb on - strandat 2120.981 kb on + strandat 2120.981 kb on + strandat 2121.058 kb on + strandat 2121.059 kb on - strandat 2121.059 kb on - strandat 2121.086 kb on - strandat 2121.087 kb on + strandat 2121.243 kb on + strand, within ABZR87_RS09975at 2121.443 kb on + strand, within ABZR87_RS09975at 2121.501 kb on + strand, within ABZR87_RS09975at 2121.501 kb on + strand, within ABZR87_RS09975at 2121.501 kb on + strand, within ABZR87_RS09975at 2121.714 kb on + strandat 2121.714 kb on + strandat 2121.714 kb on + strandat 2121.776 kb on + strandat 2121.776 kb on + strandat 2121.790 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,120,282 + ABZR87_RS09970 0.56 +0.2
2,120,384 + ABZR87_RS09970 0.67 -1.1
2,120,384 + ABZR87_RS09970 0.67 -0.1
2,120,384 + ABZR87_RS09970 0.67 -2.8
2,120,384 + ABZR87_RS09970 0.67 +1.0
2,120,385 - ABZR87_RS09970 0.67 -2.2
2,120,501 - ABZR87_RS09970 0.79 -0.3
2,120,695 + -1.5
2,120,779 - +1.6
2,120,875 + +1.2
2,120,876 - +1.2
2,120,981 + +0.0
2,120,981 + +2.5
2,121,058 + -0.0
2,121,059 - -0.1
2,121,059 - -0.2
2,121,086 - +1.2
2,121,087 + +0.8
2,121,243 + ABZR87_RS09975 0.20 -1.2
2,121,443 + ABZR87_RS09975 0.54 +0.1
2,121,501 + ABZR87_RS09975 0.64 -0.7
2,121,501 + ABZR87_RS09975 0.64 -0.7
2,121,501 + ABZR87_RS09975 0.64 -1.4
2,121,714 + -0.8
2,121,714 + -1.1
2,121,714 + -0.8
2,121,776 + -2.8
2,121,776 + -2.1
2,121,790 + -1.1

Or see this region's nucleotide sequence