Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09700

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09695 and ABZR87_RS09700 are separated by 121 nucleotidesABZR87_RS09700 and ABZR87_RS09705 are separated by 494 nucleotidesABZR87_RS09705 and ABZR87_RS09710 are separated by 112 nucleotides ABZR87_RS09695: ABZR87_RS09695 - ergothioneine biosynthesis protein EgtB, at 2,052,979 to 2,054,277 _RS09695 ABZR87_RS09700: ABZR87_RS09700 - DEAD/DEAH box helicase, at 2,054,399 to 2,056,264 _RS09700 ABZR87_RS09705: ABZR87_RS09705 - hypothetical protein, at 2,056,759 to 2,056,947 _RS09705 ABZR87_RS09710: ABZR87_RS09710 - tRNA-Arg, at 2,057,060 to 2,057,134 _RS09710 Position (kb) 2054 2055 2056 2057Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2053.439 kb on + strand, within ABZR87_RS09695at 2053.440 kb on - strand, within ABZR87_RS09695at 2053.440 kb on - strand, within ABZR87_RS09695at 2053.443 kb on + strand, within ABZR87_RS09695at 2053.443 kb on + strand, within ABZR87_RS09695at 2053.443 kb on + strand, within ABZR87_RS09695at 2053.443 kb on + strand, within ABZR87_RS09695at 2053.443 kb on + strand, within ABZR87_RS09695at 2053.444 kb on - strand, within ABZR87_RS09695at 2053.444 kb on - strand, within ABZR87_RS09695at 2053.444 kb on - strand, within ABZR87_RS09695at 2053.553 kb on + strand, within ABZR87_RS09695at 2053.554 kb on - strand, within ABZR87_RS09695at 2053.683 kb on - strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.702 kb on + strand, within ABZR87_RS09695at 2053.703 kb on - strand, within ABZR87_RS09695at 2053.703 kb on - strand, within ABZR87_RS09695at 2053.703 kb on - strand, within ABZR87_RS09695at 2053.703 kb on - strand, within ABZR87_RS09695at 2053.703 kb on - strand, within ABZR87_RS09695at 2053.703 kb on - strand, within ABZR87_RS09695at 2053.750 kb on + strand, within ABZR87_RS09695at 2053.750 kb on + strand, within ABZR87_RS09695at 2053.751 kb on - strand, within ABZR87_RS09695at 2053.894 kb on + strand, within ABZR87_RS09695at 2053.948 kb on + strand, within ABZR87_RS09695at 2053.948 kb on + strand, within ABZR87_RS09695at 2053.949 kb on - strand, within ABZR87_RS09695at 2054.184 kb on + strandat 2054.185 kb on - strandat 2054.337 kb on - strandat 2054.337 kb on - strandat 2054.337 kb on - strandat 2054.337 kb on - strandat 2054.373 kb on - strandat 2054.385 kb on + strandat 2054.436 kb on + strandat 2054.436 kb on + strandat 2054.436 kb on + strandat 2054.437 kb on - strandat 2054.437 kb on - strandat 2054.467 kb on - strandat 2054.560 kb on - strandat 2054.645 kb on - strand, within ABZR87_RS09700at 2054.695 kb on - strand, within ABZR87_RS09700at 2054.695 kb on - strand, within ABZR87_RS09700at 2055.106 kb on + strand, within ABZR87_RS09700at 2055.126 kb on + strand, within ABZR87_RS09700at 2055.126 kb on + strand, within ABZR87_RS09700at 2055.126 kb on + strand, within ABZR87_RS09700at 2055.826 kb on - strand, within ABZR87_RS09700at 2055.826 kb on - strand, within ABZR87_RS09700at 2056.107 kb on + strandat 2056.107 kb on + strandat 2056.107 kb on + strandat 2056.272 kb on - strandat 2056.272 kb on - strandat 2056.272 kb on - strandat 2056.272 kb on - strandat 2056.275 kb on + strandat 2056.275 kb on + strandat 2056.275 kb on + strandat 2056.275 kb on + strandat 2056.276 kb on - strandat 2056.276 kb on - strandat 2056.276 kb on - strandat 2056.278 kb on + strandat 2056.278 kb on + strandat 2056.278 kb on + strandat 2056.340 kb on + strandat 2056.606 kb on - strandat 2056.614 kb on - strandat 2056.634 kb on - strandat 2056.634 kb on - strandat 2056.634 kb on - strandat 2056.634 kb on - strandat 2056.634 kb on - strandat 2056.635 kb on + strandat 2056.635 kb on + strandat 2056.636 kb on - strandat 2056.718 kb on + strandat 2056.718 kb on + strandat 2056.718 kb on + strandat 2056.719 kb on - strandat 2056.719 kb on - strandat 2056.720 kb on + strandat 2056.720 kb on + strandat 2056.790 kb on + strand, within ABZR87_RS09705at 2056.790 kb on + strand, within ABZR87_RS09705at 2056.790 kb on + strand, within ABZR87_RS09705at 2056.790 kb on + strand, within ABZR87_RS09705at 2056.790 kb on + strand, within ABZR87_RS09705at 2056.790 kb on + strand, within ABZR87_RS09705at 2056.790 kb on + strand, within ABZR87_RS09705at 2056.790 kb on + strand, within ABZR87_RS09705at 2056.790 kb on + strand, within ABZR87_RS09705at 2056.791 kb on - strand, within ABZR87_RS09705at 2056.791 kb on - strand, within ABZR87_RS09705at 2056.791 kb on - strand, within ABZR87_RS09705at 2056.791 kb on - strand, within ABZR87_RS09705at 2056.791 kb on - strand, within ABZR87_RS09705at 2056.791 kb on - strand, within ABZR87_RS09705at 2056.791 kb on - strand, within ABZR87_RS09705at 2056.791 kb on - strand, within ABZR87_RS09705at 2056.791 kb on - strand, within ABZR87_RS09705at 2056.791 kb on - strand, within ABZR87_RS09705at 2056.791 kb on - strand, within ABZR87_RS09705at 2056.792 kb on + strand, within ABZR87_RS09705at 2056.792 kb on + strand, within ABZR87_RS09705at 2056.792 kb on + strand, within ABZR87_RS09705at 2056.792 kb on + strand, within ABZR87_RS09705at 2056.792 kb on + strand, within ABZR87_RS09705at 2056.793 kb on - strand, within ABZR87_RS09705at 2056.793 kb on - strand, within ABZR87_RS09705at 2056.793 kb on - strand, within ABZR87_RS09705at 2056.793 kb on - strand, within ABZR87_RS09705at 2056.793 kb on - strand, within ABZR87_RS09705at 2056.793 kb on - strand, within ABZR87_RS09705at 2056.794 kb on + strand, within ABZR87_RS09705at 2056.869 kb on - strand, within ABZR87_RS09705at 2056.945 kb on + strandat 2056.945 kb on + strandat 2056.945 kb on + strandat 2056.945 kb on + strandat 2056.945 kb on + strandat 2056.945 kb on + strandat 2056.945 kb on + strandat 2056.946 kb on - strandat 2056.946 kb on - strandat 2056.972 kb on + strandat 2056.972 kb on + strandat 2056.973 kb on - strandat 2056.973 kb on - strandat 2056.973 kb on - strandat 2056.973 kb on - strandat 2057.042 kb on + strandat 2057.043 kb on - strandat 2057.043 kb on - strandat 2057.043 kb on - strandat 2057.043 kb on - strandat 2057.088 kb on - strand, within ABZR87_RS09710at 2057.088 kb on - strand, within ABZR87_RS09710at 2057.098 kb on + strand, within ABZR87_RS09710at 2057.098 kb on + strand, within ABZR87_RS09710at 2057.098 kb on + strand, within ABZR87_RS09710at 2057.099 kb on - strand, within ABZR87_RS09710at 2057.099 kb on - strand, within ABZR87_RS09710at 2057.099 kb on - strand, within ABZR87_RS09710at 2057.184 kb on + strandat 2057.184 kb on + strandat 2057.246 kb on - strandat 2057.257 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,053,439 + ABZR87_RS09695 0.35 +0.6
2,053,440 - ABZR87_RS09695 0.35 -3.0
2,053,440 - ABZR87_RS09695 0.35 +0.6
2,053,443 + ABZR87_RS09695 0.36 +0.1
2,053,443 + ABZR87_RS09695 0.36 +0.0
2,053,443 + ABZR87_RS09695 0.36 -2.2
2,053,443 + ABZR87_RS09695 0.36 +0.7
2,053,443 + ABZR87_RS09695 0.36 -1.3
2,053,444 - ABZR87_RS09695 0.36 -0.1
2,053,444 - ABZR87_RS09695 0.36 -0.2
2,053,444 - ABZR87_RS09695 0.36 +1.5
2,053,553 + ABZR87_RS09695 0.44 +0.4
2,053,554 - ABZR87_RS09695 0.44 -1.1
2,053,683 - ABZR87_RS09695 0.54 +0.7
2,053,702 + ABZR87_RS09695 0.56 +0.1
2,053,702 + ABZR87_RS09695 0.56 +1.2
2,053,702 + ABZR87_RS09695 0.56 +1.8
2,053,702 + ABZR87_RS09695 0.56 +0.3
2,053,702 + ABZR87_RS09695 0.56 +0.4
2,053,702 + ABZR87_RS09695 0.56 +1.2
2,053,702 + ABZR87_RS09695 0.56 -0.1
2,053,702 + ABZR87_RS09695 0.56 +1.7
2,053,702 + ABZR87_RS09695 0.56 -0.4
2,053,702 + ABZR87_RS09695 0.56 -0.1
2,053,702 + ABZR87_RS09695 0.56 -2.2
2,053,702 + ABZR87_RS09695 0.56 -0.4
2,053,702 + ABZR87_RS09695 0.56 -0.8
2,053,702 + ABZR87_RS09695 0.56 +0.8
2,053,703 - ABZR87_RS09695 0.56 -0.1
2,053,703 - ABZR87_RS09695 0.56 +0.0
2,053,703 - ABZR87_RS09695 0.56 -0.7
2,053,703 - ABZR87_RS09695 0.56 +0.7
2,053,703 - ABZR87_RS09695 0.56 +0.3
2,053,703 - ABZR87_RS09695 0.56 +0.3
2,053,750 + ABZR87_RS09695 0.59 -0.2
2,053,750 + ABZR87_RS09695 0.59 -0.0
2,053,751 - ABZR87_RS09695 0.59 -0.7
2,053,894 + ABZR87_RS09695 0.70 +0.5
2,053,948 + ABZR87_RS09695 0.75 +0.1
2,053,948 + ABZR87_RS09695 0.75 +0.9
2,053,949 - ABZR87_RS09695 0.75 -1.3
2,054,184 + +1.0
2,054,185 - -0.7
2,054,337 - +1.1
2,054,337 - -0.8
2,054,337 - -0.3
2,054,337 - -1.9
2,054,373 - +0.7
2,054,385 + +0.1
2,054,436 + -1.5
2,054,436 + -1.3
2,054,436 + -0.0
2,054,437 - -0.2
2,054,437 - +1.3
2,054,467 - +0.5
2,054,560 - +1.8
2,054,645 - ABZR87_RS09700 0.13 -1.4
2,054,695 - ABZR87_RS09700 0.16 -2.6
2,054,695 - ABZR87_RS09700 0.16 -2.7
2,055,106 + ABZR87_RS09700 0.38 -1.7
2,055,126 + ABZR87_RS09700 0.39 -1.1
2,055,126 + ABZR87_RS09700 0.39 -1.9
2,055,126 + ABZR87_RS09700 0.39 -2.8
2,055,826 - ABZR87_RS09700 0.76 -2.8
2,055,826 - ABZR87_RS09700 0.76 -3.4
2,056,107 + -1.9
2,056,107 + -4.8
2,056,107 + -3.2
2,056,272 - +1.3
2,056,272 - +0.3
2,056,272 - -0.5
2,056,272 - +1.5
2,056,275 + -2.1
2,056,275 + -1.1
2,056,275 + -0.7
2,056,275 + -3.1
2,056,276 - +1.8
2,056,276 - +2.3
2,056,276 - +2.6
2,056,278 + -3.1
2,056,278 + +1.3
2,056,278 + -2.9
2,056,340 + -1.9
2,056,606 - -1.3
2,056,614 - -3.8
2,056,634 - -1.1
2,056,634 - -4.2
2,056,634 - -2.1
2,056,634 - -2.4
2,056,634 - -2.3
2,056,635 + -2.0
2,056,635 + -1.6
2,056,636 - -2.4
2,056,718 + +0.3
2,056,718 + -0.3
2,056,718 + -0.4
2,056,719 - -0.8
2,056,719 - -1.4
2,056,720 + +0.9
2,056,720 + -2.1
2,056,790 + ABZR87_RS09705 0.16 -0.5
2,056,790 + ABZR87_RS09705 0.16 +0.5
2,056,790 + ABZR87_RS09705 0.16 -0.6
2,056,790 + ABZR87_RS09705 0.16 -0.5
2,056,790 + ABZR87_RS09705 0.16 +0.9
2,056,790 + ABZR87_RS09705 0.16 +1.0
2,056,790 + ABZR87_RS09705 0.16 -0.3
2,056,790 + ABZR87_RS09705 0.16 +0.3
2,056,790 + ABZR87_RS09705 0.16 -0.0
2,056,791 - ABZR87_RS09705 0.17 +0.5
2,056,791 - ABZR87_RS09705 0.17 +0.2
2,056,791 - ABZR87_RS09705 0.17 +0.3
2,056,791 - ABZR87_RS09705 0.17 -0.6
2,056,791 - ABZR87_RS09705 0.17 -2.3
2,056,791 - ABZR87_RS09705 0.17 -0.1
2,056,791 - ABZR87_RS09705 0.17 +0.4
2,056,791 - ABZR87_RS09705 0.17 +0.3
2,056,791 - ABZR87_RS09705 0.17 -0.0
2,056,791 - ABZR87_RS09705 0.17 -0.6
2,056,791 - ABZR87_RS09705 0.17 -0.4
2,056,792 + ABZR87_RS09705 0.17 +0.3
2,056,792 + ABZR87_RS09705 0.17 +0.6
2,056,792 + ABZR87_RS09705 0.17 -0.9
2,056,792 + ABZR87_RS09705 0.17 +1.3
2,056,792 + ABZR87_RS09705 0.17 -1.5
2,056,793 - ABZR87_RS09705 0.18 -0.5
2,056,793 - ABZR87_RS09705 0.18 -0.2
2,056,793 - ABZR87_RS09705 0.18 +0.5
2,056,793 - ABZR87_RS09705 0.18 -2.7
2,056,793 - ABZR87_RS09705 0.18 -1.0
2,056,793 - ABZR87_RS09705 0.18 -0.9
2,056,794 + ABZR87_RS09705 0.19 -0.5
2,056,869 - ABZR87_RS09705 0.58 -0.1
2,056,945 + +1.8
2,056,945 + +0.3
2,056,945 + -0.4
2,056,945 + -0.7
2,056,945 + +0.8
2,056,945 + +0.8
2,056,945 + -0.2
2,056,946 - -1.2
2,056,946 - -0.3
2,056,972 + +0.5
2,056,972 + +0.9
2,056,973 - -0.1
2,056,973 - -0.1
2,056,973 - -0.9
2,056,973 - +0.5
2,057,042 + +1.2
2,057,043 - -1.6
2,057,043 - -0.6
2,057,043 - -1.0
2,057,043 - -0.9
2,057,088 - ABZR87_RS09710 0.37 -2.8
2,057,088 - ABZR87_RS09710 0.37 -3.0
2,057,098 + ABZR87_RS09710 0.51 -1.7
2,057,098 + ABZR87_RS09710 0.51 -1.7
2,057,098 + ABZR87_RS09710 0.51 -1.0
2,057,099 - ABZR87_RS09710 0.52 -2.1
2,057,099 - ABZR87_RS09710 0.52 -3.8
2,057,099 - ABZR87_RS09710 0.52 -2.6
2,057,184 + +1.1
2,057,184 + +0.1
2,057,246 - -0.1
2,057,257 - -1.1

Or see this region's nucleotide sequence