Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09630

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09625 and ABZR87_RS09630 are separated by 36 nucleotidesABZR87_RS09630 and ABZR87_RS09635 are separated by 30 nucleotidesABZR87_RS09635 and ABZR87_RS09640 overlap by 4 nucleotides ABZR87_RS09625: ABZR87_RS09625 - CobD/CbiB family protein, at 2,041,096 to 2,042,037 _RS09625 ABZR87_RS09630: ABZR87_RS09630 - hypothetical protein, at 2,042,074 to 2,042,388 _RS09630 ABZR87_RS09635: ABZR87_RS09635 - ribosome small subunit-dependent GTPase A, at 2,042,419 to 2,043,366 _RS09635 ABZR87_RS09640: ABZR87_RS09640 - M48 family metallopeptidase, at 2,043,363 to 2,044,622 _RS09640 Position (kb) 2042 2043Strain fitness (log2 ratio) -3 -2 -1 0 1at 2041.112 kb on + strandat 2041.112 kb on + strandat 2041.113 kb on - strandat 2041.113 kb on - strandat 2041.168 kb on + strandat 2041.168 kb on + strandat 2041.294 kb on + strand, within ABZR87_RS09625at 2041.295 kb on - strand, within ABZR87_RS09625at 2041.351 kb on + strand, within ABZR87_RS09625at 2041.351 kb on + strand, within ABZR87_RS09625at 2041.352 kb on - strand, within ABZR87_RS09625at 2041.352 kb on - strand, within ABZR87_RS09625at 2041.352 kb on - strand, within ABZR87_RS09625at 2041.352 kb on - strand, within ABZR87_RS09625at 2041.384 kb on + strand, within ABZR87_RS09625at 2041.384 kb on + strand, within ABZR87_RS09625at 2041.384 kb on + strand, within ABZR87_RS09625at 2041.384 kb on + strand, within ABZR87_RS09625at 2041.385 kb on - strand, within ABZR87_RS09625at 2041.385 kb on - strand, within ABZR87_RS09625at 2041.385 kb on - strand, within ABZR87_RS09625at 2041.612 kb on + strand, within ABZR87_RS09625at 2041.613 kb on - strand, within ABZR87_RS09625at 2041.635 kb on + strand, within ABZR87_RS09625at 2041.636 kb on - strand, within ABZR87_RS09625at 2041.636 kb on - strand, within ABZR87_RS09625at 2041.700 kb on - strand, within ABZR87_RS09625at 2041.700 kb on - strand, within ABZR87_RS09625at 2041.700 kb on - strand, within ABZR87_RS09625at 2041.762 kb on + strand, within ABZR87_RS09625at 2041.763 kb on - strand, within ABZR87_RS09625at 2041.763 kb on - strand, within ABZR87_RS09625at 2041.909 kb on + strand, within ABZR87_RS09625at 2041.923 kb on - strand, within ABZR87_RS09625at 2041.923 kb on - strand, within ABZR87_RS09625at 2041.923 kb on - strand, within ABZR87_RS09625at 2042.052 kb on + strandat 2042.052 kb on + strandat 2042.053 kb on - strandat 2042.147 kb on + strand, within ABZR87_RS09630at 2042.291 kb on + strand, within ABZR87_RS09630at 2042.291 kb on + strand, within ABZR87_RS09630at 2042.291 kb on + strand, within ABZR87_RS09630at 2042.292 kb on - strand, within ABZR87_RS09630at 2042.292 kb on - strand, within ABZR87_RS09630at 2042.292 kb on - strand, within ABZR87_RS09630at 2042.292 kb on - strand, within ABZR87_RS09630at 2042.406 kb on + strandat 2042.407 kb on - strandat 2042.407 kb on - strandat 2042.421 kb on - strandat 2042.421 kb on - strandat 2042.550 kb on - strand, within ABZR87_RS09635at 2042.550 kb on - strand, within ABZR87_RS09635at 2042.694 kb on - strand, within ABZR87_RS09635at 2042.694 kb on - strand, within ABZR87_RS09635at 2043.195 kb on - strand, within ABZR87_RS09635at 2043.195 kb on - strand, within ABZR87_RS09635at 2043.281 kb on + strandat 2043.281 kb on + strandat 2043.282 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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2,041,112 + -0.3
2,041,112 + +0.3
2,041,113 - -0.4
2,041,113 - +0.1
2,041,168 + +0.3
2,041,168 + -0.9
2,041,294 + ABZR87_RS09625 0.21 -0.1
2,041,295 - ABZR87_RS09625 0.21 +0.3
2,041,351 + ABZR87_RS09625 0.27 -0.5
2,041,351 + ABZR87_RS09625 0.27 -0.2
2,041,352 - ABZR87_RS09625 0.27 +0.3
2,041,352 - ABZR87_RS09625 0.27 -0.7
2,041,352 - ABZR87_RS09625 0.27 -0.8
2,041,352 - ABZR87_RS09625 0.27 -0.5
2,041,384 + ABZR87_RS09625 0.31 +0.6
2,041,384 + ABZR87_RS09625 0.31 +1.7
2,041,384 + ABZR87_RS09625 0.31 -1.2
2,041,384 + ABZR87_RS09625 0.31 -1.0
2,041,385 - ABZR87_RS09625 0.31 -1.9
2,041,385 - ABZR87_RS09625 0.31 +0.1
2,041,385 - ABZR87_RS09625 0.31 -0.4
2,041,612 + ABZR87_RS09625 0.55 -0.3
2,041,613 - ABZR87_RS09625 0.55 -0.4
2,041,635 + ABZR87_RS09625 0.57 -1.3
2,041,636 - ABZR87_RS09625 0.57 -0.3
2,041,636 - ABZR87_RS09625 0.57 -1.0
2,041,700 - ABZR87_RS09625 0.64 -0.1
2,041,700 - ABZR87_RS09625 0.64 -0.2
2,041,700 - ABZR87_RS09625 0.64 +0.5
2,041,762 + ABZR87_RS09625 0.71 -1.1
2,041,763 - ABZR87_RS09625 0.71 -1.0
2,041,763 - ABZR87_RS09625 0.71 -0.7
2,041,909 + ABZR87_RS09625 0.86 +0.5
2,041,923 - ABZR87_RS09625 0.88 -0.3
2,041,923 - ABZR87_RS09625 0.88 +0.8
2,041,923 - ABZR87_RS09625 0.88 -0.1
2,042,052 + +0.1
2,042,052 + +0.5
2,042,053 - +0.5
2,042,147 + ABZR87_RS09630 0.23 +0.7
2,042,291 + ABZR87_RS09630 0.69 -0.2
2,042,291 + ABZR87_RS09630 0.69 +1.4
2,042,291 + ABZR87_RS09630 0.69 -1.4
2,042,292 - ABZR87_RS09630 0.69 -0.5
2,042,292 - ABZR87_RS09630 0.69 +0.9
2,042,292 - ABZR87_RS09630 0.69 -0.2
2,042,292 - ABZR87_RS09630 0.69 +0.1
2,042,406 + -0.4
2,042,407 - -0.2
2,042,407 - -0.9
2,042,421 - -0.6
2,042,421 - +0.4
2,042,550 - ABZR87_RS09635 0.14 -1.5
2,042,550 - ABZR87_RS09635 0.14 -1.5
2,042,694 - ABZR87_RS09635 0.29 -1.1
2,042,694 - ABZR87_RS09635 0.29 -2.1
2,043,195 - ABZR87_RS09635 0.82 -0.7
2,043,195 - ABZR87_RS09635 0.82 +0.3
2,043,281 + -2.1
2,043,281 + -2.6
2,043,282 - -3.3

Or see this region's nucleotide sequence