Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08355 and ABZR87_RS08360 are separated by 245 nucleotides ABZR87_RS08360 and ABZR87_RS08365 are separated by 103 nucleotides
ABZR87_RS08355: ABZR87_RS08355 - GGDEF domain-containing protein, at 1,777,156 to 1,778,658
_RS08355
ABZR87_RS08360: ABZR87_RS08360 - NmrA family NAD(P)-binding protein, at 1,778,904 to 1,779,767
_RS08360
ABZR87_RS08365: ABZR87_RS08365 - LysR family transcriptional regulator, at 1,779,871 to 1,780,770
_RS08365
Position (kb)
1778
1779
1780 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1777.904 kb on + strand, within ABZR87_RS08355 at 1777.905 kb on - strand, within ABZR87_RS08355 at 1777.905 kb on - strand, within ABZR87_RS08355 at 1777.905 kb on - strand, within ABZR87_RS08355 at 1777.905 kb on - strand, within ABZR87_RS08355 at 1777.905 kb on - strand, within ABZR87_RS08355 at 1777.905 kb on - strand, within ABZR87_RS08355 at 1778.075 kb on + strand, within ABZR87_RS08355 at 1778.076 kb on - strand, within ABZR87_RS08355 at 1778.184 kb on - strand, within ABZR87_RS08355 at 1778.184 kb on - strand, within ABZR87_RS08355 at 1778.184 kb on - strand, within ABZR87_RS08355 at 1778.198 kb on + strand, within ABZR87_RS08355 at 1778.198 kb on + strand, within ABZR87_RS08355 at 1778.199 kb on - strand, within ABZR87_RS08355 at 1778.199 kb on - strand, within ABZR87_RS08355 at 1778.199 kb on - strand, within ABZR87_RS08355 at 1778.331 kb on - strand, within ABZR87_RS08355 at 1778.713 kb on + strand at 1778.713 kb on + strand at 1778.713 kb on + strand at 1778.725 kb on + strand at 1778.725 kb on + strand at 1778.726 kb on - strand at 1778.726 kb on - strand at 1778.734 kb on + strand at 1778.734 kb on + strand at 1778.735 kb on - strand at 1778.735 kb on - strand at 1778.740 kb on + strand at 1778.740 kb on + strand at 1778.740 kb on + strand at 1778.740 kb on + strand at 1778.740 kb on + strand at 1778.740 kb on + strand at 1778.741 kb on - strand at 1778.741 kb on - strand at 1778.741 kb on - strand at 1778.741 kb on - strand at 1778.741 kb on - strand at 1778.741 kb on - strand at 1778.741 kb on - strand at 1778.741 kb on - strand at 1778.741 kb on - strand at 1778.741 kb on - strand at 1778.746 kb on + strand at 1778.746 kb on + strand at 1778.747 kb on - strand at 1778.935 kb on + strand at 1779.013 kb on + strand, within ABZR87_RS08360 at 1779.014 kb on - strand, within ABZR87_RS08360 at 1779.014 kb on - strand, within ABZR87_RS08360 at 1779.014 kb on - strand, within ABZR87_RS08360 at 1779.014 kb on - strand, within ABZR87_RS08360 at 1779.040 kb on + strand, within ABZR87_RS08360 at 1779.041 kb on - strand, within ABZR87_RS08360 at 1779.106 kb on + strand, within ABZR87_RS08360 at 1779.307 kb on + strand, within ABZR87_RS08360 at 1779.308 kb on - strand, within ABZR87_RS08360 at 1779.448 kb on - strand, within ABZR87_RS08360 at 1779.478 kb on + strand, within ABZR87_RS08360 at 1779.478 kb on + strand, within ABZR87_RS08360 at 1779.478 kb on + strand, within ABZR87_RS08360 at 1779.478 kb on + strand, within ABZR87_RS08360 at 1779.478 kb on + strand, within ABZR87_RS08360 at 1779.479 kb on - strand, within ABZR87_RS08360 at 1779.479 kb on - strand, within ABZR87_RS08360 at 1779.479 kb on - strand, within ABZR87_RS08360 at 1779.479 kb on - strand, within ABZR87_RS08360 at 1779.479 kb on - strand, within ABZR87_RS08360 at 1779.479 kb on - strand, within ABZR87_RS08360 at 1779.743 kb on + strand at 1779.744 kb on - strand at 1779.753 kb on - strand at 1779.802 kb on + strand at 1779.802 kb on + strand at 1779.802 kb on + strand at 1779.802 kb on + strand at 1779.802 kb on + strand at 1779.803 kb on - strand at 1779.803 kb on - strand at 1779.803 kb on - strand at 1779.840 kb on - strand at 1779.840 kb on - strand at 1779.843 kb on + strand at 1779.870 kb on + strand at 1780.063 kb on + strand, within ABZR87_RS08365 at 1780.071 kb on + strand, within ABZR87_RS08365 at 1780.282 kb on + strand, within ABZR87_RS08365 at 1780.282 kb on + strand, within ABZR87_RS08365 at 1780.282 kb on + strand, within ABZR87_RS08365 at 1780.282 kb on + strand, within ABZR87_RS08365 at 1780.282 kb on + strand, within ABZR87_RS08365 at 1780.283 kb on - strand, within ABZR87_RS08365 at 1780.283 kb on - strand, within ABZR87_RS08365 at 1780.283 kb on - strand, within ABZR87_RS08365 at 1780.452 kb on + strand, within ABZR87_RS08365 at 1780.635 kb on + strand, within ABZR87_RS08365 at 1780.635 kb on + strand, within ABZR87_RS08365 at 1780.635 kb on + strand, within ABZR87_RS08365 at 1780.636 kb on - strand, within ABZR87_RS08365 at 1780.636 kb on - strand, within ABZR87_RS08365 at 1780.654 kb on + strand, within ABZR87_RS08365 at 1780.655 kb on - strand, within ABZR87_RS08365 at 1780.655 kb on - strand, within ABZR87_RS08365 at 1780.655 kb on - strand, within ABZR87_RS08365 at 1780.655 kb on - strand, within ABZR87_RS08365
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 1,777,904 + ABZR87_RS08355 0.50 +0.1 1,777,905 - ABZR87_RS08355 0.50 +0.6 1,777,905 - ABZR87_RS08355 0.50 +0.5 1,777,905 - ABZR87_RS08355 0.50 +1.1 1,777,905 - ABZR87_RS08355 0.50 -0.7 1,777,905 - ABZR87_RS08355 0.50 +0.2 1,777,905 - ABZR87_RS08355 0.50 -2.9 1,778,075 + ABZR87_RS08355 0.61 +0.1 1,778,076 - ABZR87_RS08355 0.61 -1.6 1,778,184 - ABZR87_RS08355 0.68 +0.3 1,778,184 - ABZR87_RS08355 0.68 +0.9 1,778,184 - ABZR87_RS08355 0.68 +1.1 1,778,198 + ABZR87_RS08355 0.69 +0.6 1,778,198 + ABZR87_RS08355 0.69 +0.7 1,778,199 - ABZR87_RS08355 0.69 +0.2 1,778,199 - ABZR87_RS08355 0.69 -0.3 1,778,199 - ABZR87_RS08355 0.69 +0.1 1,778,331 - ABZR87_RS08355 0.78 +0.6 1,778,713 + -0.2 1,778,713 + -0.4 1,778,713 + +1.1 1,778,725 + +1.3 1,778,725 + +0.8 1,778,726 - -0.7 1,778,726 - +0.7 1,778,734 + -0.5 1,778,734 + +0.7 1,778,735 - -0.5 1,778,735 - -1.0 1,778,740 + +2.5 1,778,740 + -1.9 1,778,740 + +0.3 1,778,740 + +0.6 1,778,740 + +0.4 1,778,740 + +0.1 1,778,741 - +0.2 1,778,741 - -0.1 1,778,741 - +0.2 1,778,741 - -2.0 1,778,741 - +0.5 1,778,741 - +0.2 1,778,741 - -1.2 1,778,741 - -0.4 1,778,741 - -0.4 1,778,741 - +0.3 1,778,746 + -0.3 1,778,746 + +0.5 1,778,747 - -0.0 1,778,935 + -0.1 1,779,013 + ABZR87_RS08360 0.13 -0.4 1,779,014 - ABZR87_RS08360 0.13 -1.3 1,779,014 - ABZR87_RS08360 0.13 +0.1 1,779,014 - ABZR87_RS08360 0.13 -0.9 1,779,014 - ABZR87_RS08360 0.13 -1.4 1,779,040 + ABZR87_RS08360 0.16 -0.3 1,779,041 - ABZR87_RS08360 0.16 +1.3 1,779,106 + ABZR87_RS08360 0.23 +0.5 1,779,307 + ABZR87_RS08360 0.47 -1.0 1,779,308 - ABZR87_RS08360 0.47 +0.3 1,779,448 - ABZR87_RS08360 0.63 -2.0 1,779,478 + ABZR87_RS08360 0.66 +0.4 1,779,478 + ABZR87_RS08360 0.66 +1.0 1,779,478 + ABZR87_RS08360 0.66 -0.2 1,779,478 + ABZR87_RS08360 0.66 -2.0 1,779,478 + ABZR87_RS08360 0.66 -0.2 1,779,479 - ABZR87_RS08360 0.67 -2.4 1,779,479 - ABZR87_RS08360 0.67 -0.7 1,779,479 - ABZR87_RS08360 0.67 -0.5 1,779,479 - ABZR87_RS08360 0.67 +1.2 1,779,479 - ABZR87_RS08360 0.67 -0.3 1,779,479 - ABZR87_RS08360 0.67 +0.5 1,779,743 + +0.2 1,779,744 - +1.2 1,779,753 - -1.7 1,779,802 + +0.4 1,779,802 + +0.7 1,779,802 + +0.5 1,779,802 + +0.7 1,779,802 + +1.6 1,779,803 - +0.4 1,779,803 - -0.9 1,779,803 - +0.3 1,779,840 - -0.2 1,779,840 - +0.9 1,779,843 + -1.6 1,779,870 + -1.1 1,780,063 + ABZR87_RS08365 0.21 -1.3 1,780,071 + ABZR87_RS08365 0.22 +0.1 1,780,282 + ABZR87_RS08365 0.46 -0.2 1,780,282 + ABZR87_RS08365 0.46 -0.4 1,780,282 + ABZR87_RS08365 0.46 -0.3 1,780,282 + ABZR87_RS08365 0.46 +0.5 1,780,282 + ABZR87_RS08365 0.46 -0.9 1,780,283 - ABZR87_RS08365 0.46 -1.1 1,780,283 - ABZR87_RS08365 0.46 -0.7 1,780,283 - ABZR87_RS08365 0.46 -0.4 1,780,452 + ABZR87_RS08365 0.65 -0.4 1,780,635 + ABZR87_RS08365 0.85 -0.7 1,780,635 + ABZR87_RS08365 0.85 -0.8 1,780,635 + ABZR87_RS08365 0.85 +0.1 1,780,636 - ABZR87_RS08365 0.85 +0.7 1,780,636 - ABZR87_RS08365 0.85 -0.3 1,780,654 + ABZR87_RS08365 0.87 +0.3 1,780,655 - ABZR87_RS08365 0.87 -0.5 1,780,655 - ABZR87_RS08365 0.87 +1.3 1,780,655 - ABZR87_RS08365 0.87 -0.4 1,780,655 - ABZR87_RS08365 0.87 +0.2
Or see this region's nucleotide sequence