Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07680 and ABZR87_RS07685 overlap by 4 nucleotides ABZR87_RS07685 and ABZR87_RS07690 overlap by 1 nucleotides ABZR87_RS07690 and ABZR87_RS07695 are separated by 176 nucleotides
ABZR87_RS07680: ABZR87_RS07680 - AzlD domain-containing protein, at 1,628,216 to 1,628,542
_RS07680
ABZR87_RS07685: ABZR87_RS07685 - AzlC family ABC transporter permease, at 1,628,539 to 1,629,267
_RS07685
ABZR87_RS07690: ABZR87_RS07690 - aminoglycoside phosphotransferase family protein, at 1,629,267 to 1,630,328
_RS07690
ABZR87_RS07695: ABZR87_RS07695 - LPS-assembly protein LptD, at 1,630,505 to 1,632,934
_RS07695
Position (kb)
1629
1630
1631 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1628.416 kb on - strand, within ABZR87_RS07680 at 1628.416 kb on - strand, within ABZR87_RS07680 at 1628.416 kb on - strand, within ABZR87_RS07680 at 1628.416 kb on - strand, within ABZR87_RS07680 at 1628.416 kb on - strand, within ABZR87_RS07680 at 1628.490 kb on + strand, within ABZR87_RS07680 at 1628.490 kb on + strand, within ABZR87_RS07680 at 1628.491 kb on - strand, within ABZR87_RS07680 at 1628.491 kb on - strand, within ABZR87_RS07680 at 1628.855 kb on + strand, within ABZR87_RS07685 at 1628.856 kb on - strand, within ABZR87_RS07685 at 1628.856 kb on - strand, within ABZR87_RS07685 at 1628.856 kb on - strand, within ABZR87_RS07685 at 1628.856 kb on - strand, within ABZR87_RS07685 at 1628.856 kb on - strand, within ABZR87_RS07685 at 1628.856 kb on - strand, within ABZR87_RS07685 at 1628.856 kb on - strand, within ABZR87_RS07685 at 1628.858 kb on - strand, within ABZR87_RS07685 at 1628.868 kb on - strand, within ABZR87_RS07685 at 1628.868 kb on - strand, within ABZR87_RS07685 at 1628.945 kb on + strand, within ABZR87_RS07685 at 1628.945 kb on + strand, within ABZR87_RS07685 at 1628.946 kb on - strand, within ABZR87_RS07685 at 1629.008 kb on + strand, within ABZR87_RS07685 at 1629.179 kb on + strand, within ABZR87_RS07685 at 1629.179 kb on + strand, within ABZR87_RS07685 at 1629.179 kb on + strand, within ABZR87_RS07685 at 1629.180 kb on - strand, within ABZR87_RS07685 at 1629.180 kb on - strand, within ABZR87_RS07685 at 1629.343 kb on + strand at 1629.343 kb on + strand at 1629.367 kb on + strand at 1629.367 kb on + strand at 1629.398 kb on - strand, within ABZR87_RS07690 at 1629.487 kb on + strand, within ABZR87_RS07690 at 1629.487 kb on + strand, within ABZR87_RS07690 at 1629.488 kb on - strand, within ABZR87_RS07690 at 1629.619 kb on + strand, within ABZR87_RS07690 at 1629.619 kb on + strand, within ABZR87_RS07690 at 1629.619 kb on + strand, within ABZR87_RS07690 at 1629.619 kb on + strand, within ABZR87_RS07690 at 1629.619 kb on + strand, within ABZR87_RS07690 at 1629.620 kb on - strand, within ABZR87_RS07690 at 1629.620 kb on - strand, within ABZR87_RS07690 at 1629.620 kb on - strand, within ABZR87_RS07690 at 1629.620 kb on - strand, within ABZR87_RS07690 at 1629.620 kb on - strand, within ABZR87_RS07690 at 1629.620 kb on - strand, within ABZR87_RS07690 at 1629.635 kb on - strand, within ABZR87_RS07690 at 1629.709 kb on + strand, within ABZR87_RS07690 at 1629.709 kb on + strand, within ABZR87_RS07690 at 1629.709 kb on + strand, within ABZR87_RS07690 at 1629.710 kb on - strand, within ABZR87_RS07690 at 1629.710 kb on - strand, within ABZR87_RS07690 at 1629.710 kb on - strand, within ABZR87_RS07690 at 1629.710 kb on - strand, within ABZR87_RS07690 at 1629.710 kb on - strand, within ABZR87_RS07690 at 1629.724 kb on + strand, within ABZR87_RS07690 at 1629.724 kb on + strand, within ABZR87_RS07690 at 1629.724 kb on + strand, within ABZR87_RS07690 at 1629.724 kb on + strand, within ABZR87_RS07690 at 1629.724 kb on + strand, within ABZR87_RS07690 at 1629.724 kb on + strand, within ABZR87_RS07690 at 1629.724 kb on + strand, within ABZR87_RS07690 at 1629.724 kb on + strand, within ABZR87_RS07690 at 1629.724 kb on + strand, within ABZR87_RS07690 at 1629.725 kb on - strand, within ABZR87_RS07690 at 1629.725 kb on - strand, within ABZR87_RS07690 at 1629.725 kb on - strand, within ABZR87_RS07690 at 1629.725 kb on - strand, within ABZR87_RS07690 at 1629.829 kb on + strand, within ABZR87_RS07690 at 1629.829 kb on + strand, within ABZR87_RS07690 at 1629.830 kb on - strand, within ABZR87_RS07690 at 1629.830 kb on - strand, within ABZR87_RS07690 at 1629.830 kb on - strand, within ABZR87_RS07690 at 1629.830 kb on - strand, within ABZR87_RS07690 at 1629.830 kb on - strand, within ABZR87_RS07690 at 1629.927 kb on - strand, within ABZR87_RS07690 at 1629.950 kb on + strand, within ABZR87_RS07690 at 1629.950 kb on + strand, within ABZR87_RS07690 at 1629.950 kb on + strand, within ABZR87_RS07690 at 1629.950 kb on + strand, within ABZR87_RS07690 at 1629.950 kb on + strand, within ABZR87_RS07690 at 1629.951 kb on - strand, within ABZR87_RS07690 at 1629.951 kb on - strand, within ABZR87_RS07690 at 1629.951 kb on - strand, within ABZR87_RS07690 at 1629.951 kb on - strand, within ABZR87_RS07690 at 1629.958 kb on + strand, within ABZR87_RS07690 at 1629.959 kb on - strand, within ABZR87_RS07690 at 1629.959 kb on - strand, within ABZR87_RS07690 at 1629.997 kb on + strand, within ABZR87_RS07690 at 1629.997 kb on + strand, within ABZR87_RS07690 at 1629.997 kb on + strand, within ABZR87_RS07690 at 1629.998 kb on - strand, within ABZR87_RS07690 at 1630.183 kb on + strand, within ABZR87_RS07690 at 1630.183 kb on + strand, within ABZR87_RS07690 at 1630.184 kb on - strand, within ABZR87_RS07690 at 1630.184 kb on - strand, within ABZR87_RS07690 at 1630.184 kb on - strand, within ABZR87_RS07690 at 1630.184 kb on - strand, within ABZR87_RS07690 at 1630.368 kb on + strand at 1630.368 kb on + strand at 1630.368 kb on + strand at 1630.368 kb on + strand at 1630.369 kb on - strand at 1630.369 kb on - strand at 1630.369 kb on - strand at 1630.369 kb on - strand at 1630.369 kb on - strand at 1630.369 kb on - strand at 1630.370 kb on + strand at 1630.370 kb on + strand at 1630.370 kb on + strand at 1630.446 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 1,628,416 - ABZR87_RS07680 0.61 +0.5 1,628,416 - ABZR87_RS07680 0.61 +0.2 1,628,416 - ABZR87_RS07680 0.61 -1.6 1,628,416 - ABZR87_RS07680 0.61 -1.2 1,628,416 - ABZR87_RS07680 0.61 +1.0 1,628,490 + ABZR87_RS07680 0.84 -1.2 1,628,490 + ABZR87_RS07680 0.84 -0.6 1,628,491 - ABZR87_RS07680 0.84 -0.5 1,628,491 - ABZR87_RS07680 0.84 +0.1 1,628,855 + ABZR87_RS07685 0.43 +0.8 1,628,856 - ABZR87_RS07685 0.43 -0.1 1,628,856 - ABZR87_RS07685 0.43 -1.3 1,628,856 - ABZR87_RS07685 0.43 -0.6 1,628,856 - ABZR87_RS07685 0.43 +0.0 1,628,856 - ABZR87_RS07685 0.43 +0.5 1,628,856 - ABZR87_RS07685 0.43 -0.1 1,628,856 - ABZR87_RS07685 0.43 +0.6 1,628,858 - ABZR87_RS07685 0.44 +0.5 1,628,868 - ABZR87_RS07685 0.45 -0.6 1,628,868 - ABZR87_RS07685 0.45 +1.1 1,628,945 + ABZR87_RS07685 0.56 +1.1 1,628,945 + ABZR87_RS07685 0.56 -1.3 1,628,946 - ABZR87_RS07685 0.56 +0.5 1,629,008 + ABZR87_RS07685 0.64 +0.2 1,629,179 + ABZR87_RS07685 0.88 -0.8 1,629,179 + ABZR87_RS07685 0.88 -0.2 1,629,179 + ABZR87_RS07685 0.88 -0.7 1,629,180 - ABZR87_RS07685 0.88 +1.5 1,629,180 - ABZR87_RS07685 0.88 +0.3 1,629,343 + -0.8 1,629,343 + -1.2 1,629,367 + +0.2 1,629,367 + -0.6 1,629,398 - ABZR87_RS07690 0.12 -0.5 1,629,487 + ABZR87_RS07690 0.21 -0.9 1,629,487 + ABZR87_RS07690 0.21 -0.3 1,629,488 - ABZR87_RS07690 0.21 +0.3 1,629,619 + ABZR87_RS07690 0.33 -0.4 1,629,619 + ABZR87_RS07690 0.33 -0.4 1,629,619 + ABZR87_RS07690 0.33 -0.7 1,629,619 + ABZR87_RS07690 0.33 -1.2 1,629,619 + ABZR87_RS07690 0.33 -0.5 1,629,620 - ABZR87_RS07690 0.33 -0.5 1,629,620 - ABZR87_RS07690 0.33 -0.5 1,629,620 - ABZR87_RS07690 0.33 -0.5 1,629,620 - ABZR87_RS07690 0.33 -0.4 1,629,620 - ABZR87_RS07690 0.33 -0.8 1,629,620 - ABZR87_RS07690 0.33 +0.5 1,629,635 - ABZR87_RS07690 0.35 -0.9 1,629,709 + ABZR87_RS07690 0.42 -0.5 1,629,709 + ABZR87_RS07690 0.42 -1.6 1,629,709 + ABZR87_RS07690 0.42 +1.4 1,629,710 - ABZR87_RS07690 0.42 -2.1 1,629,710 - ABZR87_RS07690 0.42 +1.4 1,629,710 - ABZR87_RS07690 0.42 -0.2 1,629,710 - ABZR87_RS07690 0.42 +1.4 1,629,710 - ABZR87_RS07690 0.42 -1.5 1,629,724 + ABZR87_RS07690 0.43 -0.4 1,629,724 + ABZR87_RS07690 0.43 +0.0 1,629,724 + ABZR87_RS07690 0.43 +0.9 1,629,724 + ABZR87_RS07690 0.43 +0.7 1,629,724 + ABZR87_RS07690 0.43 -0.5 1,629,724 + ABZR87_RS07690 0.43 +0.7 1,629,724 + ABZR87_RS07690 0.43 -1.2 1,629,724 + ABZR87_RS07690 0.43 -1.8 1,629,724 + ABZR87_RS07690 0.43 -0.0 1,629,725 - ABZR87_RS07690 0.43 +0.3 1,629,725 - ABZR87_RS07690 0.43 +1.1 1,629,725 - ABZR87_RS07690 0.43 +0.7 1,629,725 - ABZR87_RS07690 0.43 -1.4 1,629,829 + ABZR87_RS07690 0.53 +0.2 1,629,829 + ABZR87_RS07690 0.53 -0.3 1,629,830 - ABZR87_RS07690 0.53 -0.4 1,629,830 - ABZR87_RS07690 0.53 +1.1 1,629,830 - ABZR87_RS07690 0.53 +0.8 1,629,830 - ABZR87_RS07690 0.53 +0.4 1,629,830 - ABZR87_RS07690 0.53 -0.7 1,629,927 - ABZR87_RS07690 0.62 -1.4 1,629,950 + ABZR87_RS07690 0.64 +0.0 1,629,950 + ABZR87_RS07690 0.64 -0.3 1,629,950 + ABZR87_RS07690 0.64 -0.4 1,629,950 + ABZR87_RS07690 0.64 -0.9 1,629,950 + ABZR87_RS07690 0.64 -0.3 1,629,951 - ABZR87_RS07690 0.64 -1.5 1,629,951 - ABZR87_RS07690 0.64 -0.2 1,629,951 - ABZR87_RS07690 0.64 -1.6 1,629,951 - ABZR87_RS07690 0.64 +0.0 1,629,958 + ABZR87_RS07690 0.65 -2.6 1,629,959 - ABZR87_RS07690 0.65 -0.2 1,629,959 - ABZR87_RS07690 0.65 +0.7 1,629,997 + ABZR87_RS07690 0.69 -1.3 1,629,997 + ABZR87_RS07690 0.69 -0.9 1,629,997 + ABZR87_RS07690 0.69 -2.8 1,629,998 - ABZR87_RS07690 0.69 -0.9 1,630,183 + ABZR87_RS07690 0.86 -1.0 1,630,183 + ABZR87_RS07690 0.86 -0.1 1,630,184 - ABZR87_RS07690 0.86 +2.0 1,630,184 - ABZR87_RS07690 0.86 -2.2 1,630,184 - ABZR87_RS07690 0.86 +0.4 1,630,184 - ABZR87_RS07690 0.86 -2.0 1,630,368 + -0.3 1,630,368 + +1.4 1,630,368 + -0.6 1,630,368 + -1.4 1,630,369 - +0.1 1,630,369 - -0.6 1,630,369 - -0.3 1,630,369 - +0.7 1,630,369 - -0.5 1,630,369 - -0.3 1,630,370 + -0.9 1,630,370 + +0.4 1,630,370 + -0.6 1,630,446 + -0.4
Or see this region's nucleotide sequence