Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07115

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07105 and ABZR87_RS07110 are separated by 124 nucleotidesABZR87_RS07110 and ABZR87_RS07115 are separated by 19 nucleotidesABZR87_RS07115 and ABZR87_RS07120 are separated by 68 nucleotides ABZR87_RS07105: ABZR87_RS07105 - adenine phosphoribosyltransferase, at 1,499,035 to 1,499,643 _RS07105 ABZR87_RS07110: ABZR87_RS07110 - LysE family translocator, at 1,499,768 to 1,500,388 _RS07110 ABZR87_RS07115: ABZR87_RS07115 - Na/Pi cotransporter family protein, at 1,500,408 to 1,502,084 _RS07115 ABZR87_RS07120: ABZR87_RS07120 - excinuclease ABC subunit UvrA, at 1,502,153 to 1,505,017 _RS07120 Position (kb) 1500 1501 1502 1503Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1499.681 kb on + strandat 1499.681 kb on + strandat 1499.681 kb on + strandat 1499.682 kb on - strandat 1499.682 kb on - strandat 1499.682 kb on - strandat 1499.700 kb on + strandat 1499.700 kb on + strandat 1499.701 kb on - strandat 1499.710 kb on + strandat 1499.710 kb on + strandat 1499.711 kb on - strandat 1499.711 kb on - strandat 1499.711 kb on - strandat 1499.711 kb on - strandat 1499.726 kb on - strandat 1499.726 kb on - strandat 1499.726 kb on - strandat 1499.726 kb on - strandat 1499.778 kb on + strandat 1499.778 kb on + strandat 1499.778 kb on + strandat 1499.778 kb on + strandat 1499.778 kb on + strandat 1499.778 kb on + strandat 1499.778 kb on + strandat 1499.779 kb on - strandat 1499.779 kb on - strandat 1499.779 kb on - strandat 1499.779 kb on - strandat 1499.779 kb on - strandat 1499.779 kb on - strandat 1499.779 kb on - strandat 1499.779 kb on - strandat 1499.779 kb on - strandat 1499.780 kb on - strandat 1499.920 kb on + strand, within ABZR87_RS07110at 1499.920 kb on + strand, within ABZR87_RS07110at 1499.920 kb on + strand, within ABZR87_RS07110at 1499.921 kb on - strand, within ABZR87_RS07110at 1499.921 kb on - strand, within ABZR87_RS07110at 1500.006 kb on - strand, within ABZR87_RS07110at 1500.006 kb on - strand, within ABZR87_RS07110at 1500.006 kb on - strand, within ABZR87_RS07110at 1500.006 kb on - strand, within ABZR87_RS07110at 1500.006 kb on - strand, within ABZR87_RS07110at 1500.263 kb on + strand, within ABZR87_RS07110at 1500.263 kb on + strand, within ABZR87_RS07110at 1500.263 kb on + strand, within ABZR87_RS07110at 1500.263 kb on + strand, within ABZR87_RS07110at 1500.264 kb on - strand, within ABZR87_RS07110at 1500.264 kb on - strand, within ABZR87_RS07110at 1500.264 kb on - strand, within ABZR87_RS07110at 1500.264 kb on - strand, within ABZR87_RS07110at 1500.264 kb on - strand, within ABZR87_RS07110at 1500.264 kb on - strand, within ABZR87_RS07110at 1500.346 kb on + strandat 1500.347 kb on - strandat 1500.347 kb on - strandat 1500.386 kb on + strandat 1500.386 kb on + strandat 1500.386 kb on + strandat 1500.386 kb on + strandat 1500.386 kb on + strandat 1500.387 kb on - strandat 1500.387 kb on - strandat 1500.387 kb on - strandat 1500.387 kb on - strandat 1500.387 kb on - strandat 1500.387 kb on - strandat 1500.387 kb on - strandat 1500.422 kb on + strandat 1500.422 kb on + strandat 1500.422 kb on + strandat 1500.423 kb on - strandat 1500.423 kb on - strandat 1500.423 kb on - strandat 1500.492 kb on + strandat 1500.492 kb on + strandat 1500.492 kb on + strandat 1500.590 kb on + strand, within ABZR87_RS07115at 1500.591 kb on - strand, within ABZR87_RS07115at 1500.964 kb on - strand, within ABZR87_RS07115at 1500.964 kb on - strand, within ABZR87_RS07115at 1501.286 kb on + strand, within ABZR87_RS07115at 1501.287 kb on - strand, within ABZR87_RS07115at 1501.338 kb on - strand, within ABZR87_RS07115at 1501.385 kb on + strand, within ABZR87_RS07115at 1501.542 kb on + strand, within ABZR87_RS07115at 1501.542 kb on + strand, within ABZR87_RS07115at 1501.543 kb on - strand, within ABZR87_RS07115at 1501.543 kb on - strand, within ABZR87_RS07115at 1501.561 kb on - strand, within ABZR87_RS07115at 1501.561 kb on - strand, within ABZR87_RS07115at 1501.870 kb on - strand, within ABZR87_RS07115at 1501.870 kb on - strand, within ABZR87_RS07115at 1502.154 kb on + strandat 1502.154 kb on + strandat 1502.154 kb on + strandat 1502.155 kb on - strandat 1502.155 kb on - strandat 1502.181 kb on + strandat 1502.182 kb on - strandat 1502.182 kb on - strandat 1502.335 kb on + strandat 1502.335 kb on + strandat 1502.335 kb on + strandat 1502.358 kb on + strandat 1502.358 kb on + strandat 1502.358 kb on + strandat 1502.358 kb on + strandat 1502.359 kb on - strandat 1502.359 kb on - strandat 1502.424 kb on + strandat 1502.424 kb on + strandat 1502.424 kb on + strandat 1502.424 kb on + strandat 1502.424 kb on + strandat 1502.424 kb on + strandat 1502.424 kb on + strandat 1502.424 kb on + strandat 1502.424 kb on + strandat 1502.425 kb on - strandat 1502.425 kb on - strandat 1502.425 kb on - strandat 1502.425 kb on - strandat 1502.425 kb on - strandat 1502.425 kb on - strandat 1502.425 kb on - strandat 1502.526 kb on + strand, within ABZR87_RS07120at 1502.526 kb on + strand, within ABZR87_RS07120at 1502.527 kb on - strand, within ABZR87_RS07120at 1502.527 kb on - strand, within ABZR87_RS07120at 1502.527 kb on - strand, within ABZR87_RS07120at 1502.646 kb on + strand, within ABZR87_RS07120at 1502.646 kb on + strand, within ABZR87_RS07120at 1502.647 kb on - strand, within ABZR87_RS07120at 1502.647 kb on - strand, within ABZR87_RS07120at 1502.647 kb on - strand, within ABZR87_RS07120at 1502.647 kb on - strand, within ABZR87_RS07120at 1502.647 kb on - strand, within ABZR87_RS07120at 1502.647 kb on - strand, within ABZR87_RS07120at 1502.647 kb on - strand, within ABZR87_RS07120at 1502.673 kb on + strand, within ABZR87_RS07120at 1502.673 kb on + strand, within ABZR87_RS07120at 1502.673 kb on + strand, within ABZR87_RS07120at 1502.673 kb on + strand, within ABZR87_RS07120at 1502.674 kb on - strand, within ABZR87_RS07120at 1502.674 kb on - strand, within ABZR87_RS07120at 1502.674 kb on - strand, within ABZR87_RS07120at 1502.706 kb on + strand, within ABZR87_RS07120at 1502.706 kb on + strand, within ABZR87_RS07120at 1502.706 kb on + strand, within ABZR87_RS07120at 1502.706 kb on + strand, within ABZR87_RS07120at 1502.706 kb on + strand, within ABZR87_RS07120at 1502.706 kb on + strand, within ABZR87_RS07120at 1502.706 kb on + strand, within ABZR87_RS07120at 1502.707 kb on - strand, within ABZR87_RS07120at 1502.707 kb on - strand, within ABZR87_RS07120at 1502.808 kb on + strand, within ABZR87_RS07120at 1502.809 kb on - strand, within ABZR87_RS07120at 1502.875 kb on - strand, within ABZR87_RS07120at 1502.994 kb on + strand, within ABZR87_RS07120at 1502.995 kb on - strand, within ABZR87_RS07120at 1502.995 kb on - strand, within ABZR87_RS07120at 1502.995 kb on - strand, within ABZR87_RS07120at 1503.018 kb on + strand, within ABZR87_RS07120at 1503.019 kb on - strand, within ABZR87_RS07120at 1503.019 kb on - strand, within ABZR87_RS07120at 1503.019 kb on - strand, within ABZR87_RS07120

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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1,499,681 + -0.5
1,499,681 + -1.5
1,499,681 + -1.6
1,499,682 - +0.6
1,499,682 - +1.7
1,499,682 - +0.5
1,499,700 + +0.1
1,499,700 + -2.8
1,499,701 - +1.1
1,499,710 + -3.4
1,499,710 + -1.0
1,499,711 - +1.3
1,499,711 - +0.9
1,499,711 - +1.5
1,499,711 - +2.5
1,499,726 - +0.7
1,499,726 - -2.7
1,499,726 - +0.6
1,499,726 - +0.6
1,499,778 + -1.3
1,499,778 + -1.7
1,499,778 + -0.3
1,499,778 + -0.2
1,499,778 + +0.7
1,499,778 + -2.9
1,499,778 + -0.5
1,499,779 - +1.4
1,499,779 - +0.8
1,499,779 - +1.1
1,499,779 - +1.5
1,499,779 - -1.1
1,499,779 - +0.8
1,499,779 - +0.5
1,499,779 - +1.1
1,499,779 - +1.9
1,499,780 - +0.7
1,499,920 + ABZR87_RS07110 0.24 -1.9
1,499,920 + ABZR87_RS07110 0.24 -3.6
1,499,920 + ABZR87_RS07110 0.24 -0.3
1,499,921 - ABZR87_RS07110 0.25 +1.5
1,499,921 - ABZR87_RS07110 0.25 +1.6
1,500,006 - ABZR87_RS07110 0.38 -1.7
1,500,006 - ABZR87_RS07110 0.38 +1.2
1,500,006 - ABZR87_RS07110 0.38 +1.5
1,500,006 - ABZR87_RS07110 0.38 +2.7
1,500,006 - ABZR87_RS07110 0.38 +1.8
1,500,263 + ABZR87_RS07110 0.80 -3.5
1,500,263 + ABZR87_RS07110 0.80 -1.1
1,500,263 + ABZR87_RS07110 0.80 -2.6
1,500,263 + ABZR87_RS07110 0.80 -0.6
1,500,264 - ABZR87_RS07110 0.80 +0.7
1,500,264 - ABZR87_RS07110 0.80 +1.5
1,500,264 - ABZR87_RS07110 0.80 +1.3
1,500,264 - ABZR87_RS07110 0.80 +0.7
1,500,264 - ABZR87_RS07110 0.80 +1.2
1,500,264 - ABZR87_RS07110 0.80 +0.4
1,500,346 + -0.7
1,500,347 - +0.7
1,500,347 - +2.6
1,500,386 + +0.0
1,500,386 + -1.1
1,500,386 + +0.9
1,500,386 + -0.2
1,500,386 + +1.5
1,500,387 - +1.6
1,500,387 - +1.9
1,500,387 - +2.1
1,500,387 - +1.2
1,500,387 - +1.4
1,500,387 - +1.0
1,500,387 - +0.7
1,500,422 + +1.5
1,500,422 + +0.8
1,500,422 + +1.6
1,500,423 - +2.6
1,500,423 - +1.3
1,500,423 - +1.3
1,500,492 + +1.4
1,500,492 + +1.4
1,500,492 + +2.0
1,500,590 + ABZR87_RS07115 0.11 +1.7
1,500,591 - ABZR87_RS07115 0.11 +1.0
1,500,964 - ABZR87_RS07115 0.33 -2.2
1,500,964 - ABZR87_RS07115 0.33 +2.0
1,501,286 + ABZR87_RS07115 0.52 +0.8
1,501,287 - ABZR87_RS07115 0.52 +1.8
1,501,338 - ABZR87_RS07115 0.55 +1.9
1,501,385 + ABZR87_RS07115 0.58 +1.4
1,501,542 + ABZR87_RS07115 0.68 +1.7
1,501,542 + ABZR87_RS07115 0.68 +1.3
1,501,543 - ABZR87_RS07115 0.68 +1.1
1,501,543 - ABZR87_RS07115 0.68 +0.7
1,501,561 - ABZR87_RS07115 0.69 +3.2
1,501,561 - ABZR87_RS07115 0.69 +1.3
1,501,870 - ABZR87_RS07115 0.87 +2.1
1,501,870 - ABZR87_RS07115 0.87 +1.7
1,502,154 + -1.2
1,502,154 + -0.7
1,502,154 + -0.1
1,502,155 - +0.5
1,502,155 - -0.4
1,502,181 + +2.2
1,502,182 - +0.4
1,502,182 - -0.3
1,502,335 + -2.7
1,502,335 + -2.4
1,502,335 + -0.5
1,502,358 + -0.4
1,502,358 + -2.1
1,502,358 + +0.2
1,502,358 + -0.2
1,502,359 - -0.2
1,502,359 - -0.8
1,502,424 + +0.2
1,502,424 + -0.1
1,502,424 + +0.3
1,502,424 + +0.3
1,502,424 + +0.9
1,502,424 + -3.4
1,502,424 + -0.4
1,502,424 + -0.8
1,502,424 + -1.3
1,502,425 - -0.9
1,502,425 - -2.4
1,502,425 - +0.6
1,502,425 - -0.0
1,502,425 - -0.5
1,502,425 - +0.9
1,502,425 - -1.8
1,502,526 + ABZR87_RS07120 0.13 +0.6
1,502,526 + ABZR87_RS07120 0.13 +0.3
1,502,527 - ABZR87_RS07120 0.13 -0.7
1,502,527 - ABZR87_RS07120 0.13 -0.3
1,502,527 - ABZR87_RS07120 0.13 +0.6
1,502,646 + ABZR87_RS07120 0.17 +0.1
1,502,646 + ABZR87_RS07120 0.17 -0.6
1,502,647 - ABZR87_RS07120 0.17 -0.8
1,502,647 - ABZR87_RS07120 0.17 -0.6
1,502,647 - ABZR87_RS07120 0.17 +0.1
1,502,647 - ABZR87_RS07120 0.17 -0.2
1,502,647 - ABZR87_RS07120 0.17 -0.6
1,502,647 - ABZR87_RS07120 0.17 -0.6
1,502,647 - ABZR87_RS07120 0.17 -0.3
1,502,673 + ABZR87_RS07120 0.18 +0.5
1,502,673 + ABZR87_RS07120 0.18 -0.0
1,502,673 + ABZR87_RS07120 0.18 -0.4
1,502,673 + ABZR87_RS07120 0.18 +0.3
1,502,674 - ABZR87_RS07120 0.18 +1.1
1,502,674 - ABZR87_RS07120 0.18 -0.9
1,502,674 - ABZR87_RS07120 0.18 -0.2
1,502,706 + ABZR87_RS07120 0.19 +0.9
1,502,706 + ABZR87_RS07120 0.19 +1.0
1,502,706 + ABZR87_RS07120 0.19 -0.0
1,502,706 + ABZR87_RS07120 0.19 +0.6
1,502,706 + ABZR87_RS07120 0.19 -0.5
1,502,706 + ABZR87_RS07120 0.19 -1.8
1,502,706 + ABZR87_RS07120 0.19 -1.4
1,502,707 - ABZR87_RS07120 0.19 -0.7
1,502,707 - ABZR87_RS07120 0.19 -1.4
1,502,808 + ABZR87_RS07120 0.23 -0.0
1,502,809 - ABZR87_RS07120 0.23 +0.1
1,502,875 - ABZR87_RS07120 0.25 -0.2
1,502,994 + ABZR87_RS07120 0.29 -0.4
1,502,995 - ABZR87_RS07120 0.29 -1.5
1,502,995 - ABZR87_RS07120 0.29 +1.3
1,502,995 - ABZR87_RS07120 0.29 -0.5
1,503,018 + ABZR87_RS07120 0.30 +0.5
1,503,019 - ABZR87_RS07120 0.30 -0.8
1,503,019 - ABZR87_RS07120 0.30 +0.6
1,503,019 - ABZR87_RS07120 0.30 +0.2

Or see this region's nucleotide sequence