Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07105 and ABZR87_RS07110 are separated by 124 nucleotides ABZR87_RS07110 and ABZR87_RS07115 are separated by 19 nucleotides ABZR87_RS07115 and ABZR87_RS07120 are separated by 68 nucleotides
ABZR87_RS07105: ABZR87_RS07105 - adenine phosphoribosyltransferase, at 1,499,035 to 1,499,643
_RS07105
ABZR87_RS07110: ABZR87_RS07110 - LysE family translocator, at 1,499,768 to 1,500,388
_RS07110
ABZR87_RS07115: ABZR87_RS07115 - Na/Pi cotransporter family protein, at 1,500,408 to 1,502,084
_RS07115
ABZR87_RS07120: ABZR87_RS07120 - excinuclease ABC subunit UvrA, at 1,502,153 to 1,505,017
_RS07120
Position (kb)
1500
1501
1502
1503 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1499.681 kb on + strand at 1499.681 kb on + strand at 1499.681 kb on + strand at 1499.682 kb on - strand at 1499.682 kb on - strand at 1499.682 kb on - strand at 1499.700 kb on + strand at 1499.700 kb on + strand at 1499.701 kb on - strand at 1499.710 kb on + strand at 1499.710 kb on + strand at 1499.711 kb on - strand at 1499.711 kb on - strand at 1499.711 kb on - strand at 1499.711 kb on - strand at 1499.726 kb on - strand at 1499.726 kb on - strand at 1499.726 kb on - strand at 1499.726 kb on - strand at 1499.778 kb on + strand at 1499.778 kb on + strand at 1499.778 kb on + strand at 1499.778 kb on + strand at 1499.778 kb on + strand at 1499.778 kb on + strand at 1499.778 kb on + strand at 1499.779 kb on - strand at 1499.779 kb on - strand at 1499.779 kb on - strand at 1499.779 kb on - strand at 1499.779 kb on - strand at 1499.779 kb on - strand at 1499.779 kb on - strand at 1499.779 kb on - strand at 1499.779 kb on - strand at 1499.780 kb on - strand at 1499.920 kb on + strand, within ABZR87_RS07110 at 1499.920 kb on + strand, within ABZR87_RS07110 at 1499.920 kb on + strand, within ABZR87_RS07110 at 1499.921 kb on - strand, within ABZR87_RS07110 at 1499.921 kb on - strand, within ABZR87_RS07110 at 1500.006 kb on - strand, within ABZR87_RS07110 at 1500.006 kb on - strand, within ABZR87_RS07110 at 1500.006 kb on - strand, within ABZR87_RS07110 at 1500.006 kb on - strand, within ABZR87_RS07110 at 1500.006 kb on - strand, within ABZR87_RS07110 at 1500.263 kb on + strand, within ABZR87_RS07110 at 1500.263 kb on + strand, within ABZR87_RS07110 at 1500.263 kb on + strand, within ABZR87_RS07110 at 1500.263 kb on + strand, within ABZR87_RS07110 at 1500.264 kb on - strand, within ABZR87_RS07110 at 1500.264 kb on - strand, within ABZR87_RS07110 at 1500.264 kb on - strand, within ABZR87_RS07110 at 1500.264 kb on - strand, within ABZR87_RS07110 at 1500.264 kb on - strand, within ABZR87_RS07110 at 1500.264 kb on - strand, within ABZR87_RS07110 at 1500.346 kb on + strand at 1500.347 kb on - strand at 1500.347 kb on - strand at 1500.386 kb on + strand at 1500.386 kb on + strand at 1500.386 kb on + strand at 1500.386 kb on + strand at 1500.386 kb on + strand at 1500.387 kb on - strand at 1500.387 kb on - strand at 1500.387 kb on - strand at 1500.387 kb on - strand at 1500.387 kb on - strand at 1500.387 kb on - strand at 1500.387 kb on - strand at 1500.422 kb on + strand at 1500.422 kb on + strand at 1500.422 kb on + strand at 1500.423 kb on - strand at 1500.423 kb on - strand at 1500.423 kb on - strand at 1500.492 kb on + strand at 1500.492 kb on + strand at 1500.492 kb on + strand at 1500.590 kb on + strand, within ABZR87_RS07115 at 1500.591 kb on - strand, within ABZR87_RS07115 at 1500.964 kb on - strand, within ABZR87_RS07115 at 1500.964 kb on - strand, within ABZR87_RS07115 at 1501.286 kb on + strand, within ABZR87_RS07115 at 1501.287 kb on - strand, within ABZR87_RS07115 at 1501.338 kb on - strand, within ABZR87_RS07115 at 1501.385 kb on + strand, within ABZR87_RS07115 at 1501.542 kb on + strand, within ABZR87_RS07115 at 1501.542 kb on + strand, within ABZR87_RS07115 at 1501.543 kb on - strand, within ABZR87_RS07115 at 1501.543 kb on - strand, within ABZR87_RS07115 at 1501.561 kb on - strand, within ABZR87_RS07115 at 1501.561 kb on - strand, within ABZR87_RS07115 at 1501.870 kb on - strand, within ABZR87_RS07115 at 1501.870 kb on - strand, within ABZR87_RS07115 at 1502.154 kb on + strand at 1502.154 kb on + strand at 1502.154 kb on + strand at 1502.155 kb on - strand at 1502.155 kb on - strand at 1502.181 kb on + strand at 1502.182 kb on - strand at 1502.182 kb on - strand at 1502.335 kb on + strand at 1502.335 kb on + strand at 1502.335 kb on + strand at 1502.358 kb on + strand at 1502.358 kb on + strand at 1502.358 kb on + strand at 1502.358 kb on + strand at 1502.359 kb on - strand at 1502.359 kb on - strand at 1502.424 kb on + strand at 1502.424 kb on + strand at 1502.424 kb on + strand at 1502.424 kb on + strand at 1502.424 kb on + strand at 1502.424 kb on + strand at 1502.424 kb on + strand at 1502.424 kb on + strand at 1502.424 kb on + strand at 1502.425 kb on - strand at 1502.425 kb on - strand at 1502.425 kb on - strand at 1502.425 kb on - strand at 1502.425 kb on - strand at 1502.425 kb on - strand at 1502.425 kb on - strand at 1502.526 kb on + strand, within ABZR87_RS07120 at 1502.526 kb on + strand, within ABZR87_RS07120 at 1502.527 kb on - strand, within ABZR87_RS07120 at 1502.527 kb on - strand, within ABZR87_RS07120 at 1502.527 kb on - strand, within ABZR87_RS07120 at 1502.646 kb on + strand, within ABZR87_RS07120 at 1502.646 kb on + strand, within ABZR87_RS07120 at 1502.647 kb on - strand, within ABZR87_RS07120 at 1502.647 kb on - strand, within ABZR87_RS07120 at 1502.647 kb on - strand, within ABZR87_RS07120 at 1502.647 kb on - strand, within ABZR87_RS07120 at 1502.647 kb on - strand, within ABZR87_RS07120 at 1502.647 kb on - strand, within ABZR87_RS07120 at 1502.647 kb on - strand, within ABZR87_RS07120 at 1502.673 kb on + strand, within ABZR87_RS07120 at 1502.673 kb on + strand, within ABZR87_RS07120 at 1502.673 kb on + strand, within ABZR87_RS07120 at 1502.673 kb on + strand, within ABZR87_RS07120 at 1502.674 kb on - strand, within ABZR87_RS07120 at 1502.674 kb on - strand, within ABZR87_RS07120 at 1502.674 kb on - strand, within ABZR87_RS07120 at 1502.706 kb on + strand, within ABZR87_RS07120 at 1502.706 kb on + strand, within ABZR87_RS07120 at 1502.706 kb on + strand, within ABZR87_RS07120 at 1502.706 kb on + strand, within ABZR87_RS07120 at 1502.706 kb on + strand, within ABZR87_RS07120 at 1502.706 kb on + strand, within ABZR87_RS07120 at 1502.706 kb on + strand, within ABZR87_RS07120 at 1502.707 kb on - strand, within ABZR87_RS07120 at 1502.707 kb on - strand, within ABZR87_RS07120 at 1502.808 kb on + strand, within ABZR87_RS07120 at 1502.809 kb on - strand, within ABZR87_RS07120 at 1502.875 kb on - strand, within ABZR87_RS07120 at 1502.994 kb on + strand, within ABZR87_RS07120 at 1502.995 kb on - strand, within ABZR87_RS07120 at 1502.995 kb on - strand, within ABZR87_RS07120 at 1502.995 kb on - strand, within ABZR87_RS07120 at 1503.018 kb on + strand, within ABZR87_RS07120 at 1503.019 kb on - strand, within ABZR87_RS07120 at 1503.019 kb on - strand, within ABZR87_RS07120 at 1503.019 kb on - strand, within ABZR87_RS07120
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 1,499,681 + -0.5 1,499,681 + -1.5 1,499,681 + -1.6 1,499,682 - +0.6 1,499,682 - +1.7 1,499,682 - +0.5 1,499,700 + +0.1 1,499,700 + -2.8 1,499,701 - +1.1 1,499,710 + -3.4 1,499,710 + -1.0 1,499,711 - +1.3 1,499,711 - +0.9 1,499,711 - +1.5 1,499,711 - +2.5 1,499,726 - +0.7 1,499,726 - -2.7 1,499,726 - +0.6 1,499,726 - +0.6 1,499,778 + -1.3 1,499,778 + -1.7 1,499,778 + -0.3 1,499,778 + -0.2 1,499,778 + +0.7 1,499,778 + -2.9 1,499,778 + -0.5 1,499,779 - +1.4 1,499,779 - +0.8 1,499,779 - +1.1 1,499,779 - +1.5 1,499,779 - -1.1 1,499,779 - +0.8 1,499,779 - +0.5 1,499,779 - +1.1 1,499,779 - +1.9 1,499,780 - +0.7 1,499,920 + ABZR87_RS07110 0.24 -1.9 1,499,920 + ABZR87_RS07110 0.24 -3.6 1,499,920 + ABZR87_RS07110 0.24 -0.3 1,499,921 - ABZR87_RS07110 0.25 +1.5 1,499,921 - ABZR87_RS07110 0.25 +1.6 1,500,006 - ABZR87_RS07110 0.38 -1.7 1,500,006 - ABZR87_RS07110 0.38 +1.2 1,500,006 - ABZR87_RS07110 0.38 +1.5 1,500,006 - ABZR87_RS07110 0.38 +2.7 1,500,006 - ABZR87_RS07110 0.38 +1.8 1,500,263 + ABZR87_RS07110 0.80 -3.5 1,500,263 + ABZR87_RS07110 0.80 -1.1 1,500,263 + ABZR87_RS07110 0.80 -2.6 1,500,263 + ABZR87_RS07110 0.80 -0.6 1,500,264 - ABZR87_RS07110 0.80 +0.7 1,500,264 - ABZR87_RS07110 0.80 +1.5 1,500,264 - ABZR87_RS07110 0.80 +1.3 1,500,264 - ABZR87_RS07110 0.80 +0.7 1,500,264 - ABZR87_RS07110 0.80 +1.2 1,500,264 - ABZR87_RS07110 0.80 +0.4 1,500,346 + -0.7 1,500,347 - +0.7 1,500,347 - +2.6 1,500,386 + +0.0 1,500,386 + -1.1 1,500,386 + +0.9 1,500,386 + -0.2 1,500,386 + +1.5 1,500,387 - +1.6 1,500,387 - +1.9 1,500,387 - +2.1 1,500,387 - +1.2 1,500,387 - +1.4 1,500,387 - +1.0 1,500,387 - +0.7 1,500,422 + +1.5 1,500,422 + +0.8 1,500,422 + +1.6 1,500,423 - +2.6 1,500,423 - +1.3 1,500,423 - +1.3 1,500,492 + +1.4 1,500,492 + +1.4 1,500,492 + +2.0 1,500,590 + ABZR87_RS07115 0.11 +1.7 1,500,591 - ABZR87_RS07115 0.11 +1.0 1,500,964 - ABZR87_RS07115 0.33 -2.2 1,500,964 - ABZR87_RS07115 0.33 +2.0 1,501,286 + ABZR87_RS07115 0.52 +0.8 1,501,287 - ABZR87_RS07115 0.52 +1.8 1,501,338 - ABZR87_RS07115 0.55 +1.9 1,501,385 + ABZR87_RS07115 0.58 +1.4 1,501,542 + ABZR87_RS07115 0.68 +1.7 1,501,542 + ABZR87_RS07115 0.68 +1.3 1,501,543 - ABZR87_RS07115 0.68 +1.1 1,501,543 - ABZR87_RS07115 0.68 +0.7 1,501,561 - ABZR87_RS07115 0.69 +3.2 1,501,561 - ABZR87_RS07115 0.69 +1.3 1,501,870 - ABZR87_RS07115 0.87 +2.1 1,501,870 - ABZR87_RS07115 0.87 +1.7 1,502,154 + -1.2 1,502,154 + -0.7 1,502,154 + -0.1 1,502,155 - +0.5 1,502,155 - -0.4 1,502,181 + +2.2 1,502,182 - +0.4 1,502,182 - -0.3 1,502,335 + -2.7 1,502,335 + -2.4 1,502,335 + -0.5 1,502,358 + -0.4 1,502,358 + -2.1 1,502,358 + +0.2 1,502,358 + -0.2 1,502,359 - -0.2 1,502,359 - -0.8 1,502,424 + +0.2 1,502,424 + -0.1 1,502,424 + +0.3 1,502,424 + +0.3 1,502,424 + +0.9 1,502,424 + -3.4 1,502,424 + -0.4 1,502,424 + -0.8 1,502,424 + -1.3 1,502,425 - -0.9 1,502,425 - -2.4 1,502,425 - +0.6 1,502,425 - -0.0 1,502,425 - -0.5 1,502,425 - +0.9 1,502,425 - -1.8 1,502,526 + ABZR87_RS07120 0.13 +0.6 1,502,526 + ABZR87_RS07120 0.13 +0.3 1,502,527 - ABZR87_RS07120 0.13 -0.7 1,502,527 - ABZR87_RS07120 0.13 -0.3 1,502,527 - ABZR87_RS07120 0.13 +0.6 1,502,646 + ABZR87_RS07120 0.17 +0.1 1,502,646 + ABZR87_RS07120 0.17 -0.6 1,502,647 - ABZR87_RS07120 0.17 -0.8 1,502,647 - ABZR87_RS07120 0.17 -0.6 1,502,647 - ABZR87_RS07120 0.17 +0.1 1,502,647 - ABZR87_RS07120 0.17 -0.2 1,502,647 - ABZR87_RS07120 0.17 -0.6 1,502,647 - ABZR87_RS07120 0.17 -0.6 1,502,647 - ABZR87_RS07120 0.17 -0.3 1,502,673 + ABZR87_RS07120 0.18 +0.5 1,502,673 + ABZR87_RS07120 0.18 -0.0 1,502,673 + ABZR87_RS07120 0.18 -0.4 1,502,673 + ABZR87_RS07120 0.18 +0.3 1,502,674 - ABZR87_RS07120 0.18 +1.1 1,502,674 - ABZR87_RS07120 0.18 -0.9 1,502,674 - ABZR87_RS07120 0.18 -0.2 1,502,706 + ABZR87_RS07120 0.19 +0.9 1,502,706 + ABZR87_RS07120 0.19 +1.0 1,502,706 + ABZR87_RS07120 0.19 -0.0 1,502,706 + ABZR87_RS07120 0.19 +0.6 1,502,706 + ABZR87_RS07120 0.19 -0.5 1,502,706 + ABZR87_RS07120 0.19 -1.8 1,502,706 + ABZR87_RS07120 0.19 -1.4 1,502,707 - ABZR87_RS07120 0.19 -0.7 1,502,707 - ABZR87_RS07120 0.19 -1.4 1,502,808 + ABZR87_RS07120 0.23 -0.0 1,502,809 - ABZR87_RS07120 0.23 +0.1 1,502,875 - ABZR87_RS07120 0.25 -0.2 1,502,994 + ABZR87_RS07120 0.29 -0.4 1,502,995 - ABZR87_RS07120 0.29 -1.5 1,502,995 - ABZR87_RS07120 0.29 +1.3 1,502,995 - ABZR87_RS07120 0.29 -0.5 1,503,018 + ABZR87_RS07120 0.30 +0.5 1,503,019 - ABZR87_RS07120 0.30 -0.8 1,503,019 - ABZR87_RS07120 0.30 +0.6 1,503,019 - ABZR87_RS07120 0.30 +0.2
Or see this region's nucleotide sequence