Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06630

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06625 and ABZR87_RS06630 are separated by 101 nucleotidesABZR87_RS06630 and ABZR87_RS06635 are separated by 25 nucleotides ABZR87_RS06625: ABZR87_RS06625 - dicarboxylate/amino acid:cation symporter, at 1,409,164 to 1,410,453 _RS06625 ABZR87_RS06630: ABZR87_RS06630 - sensor histidine kinase, at 1,410,555 to 1,412,573 _RS06630 ABZR87_RS06635: ABZR87_RS06635 - sigma-54 dependent transcriptional regulator, at 1,412,599 to 1,413,915 _RS06635 Position (kb) 1410 1411 1412 1413Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1409.794 kb on + strand, within ABZR87_RS06625at 1409.794 kb on + strand, within ABZR87_RS06625at 1409.794 kb on + strand, within ABZR87_RS06625at 1409.795 kb on - strand, within ABZR87_RS06625at 1409.795 kb on - strand, within ABZR87_RS06625at 1409.795 kb on - strand, within ABZR87_RS06625at 1409.842 kb on + strand, within ABZR87_RS06625at 1409.842 kb on + strand, within ABZR87_RS06625at 1409.843 kb on - strand, within ABZR87_RS06625at 1409.926 kb on + strand, within ABZR87_RS06625at 1409.926 kb on + strand, within ABZR87_RS06625at 1409.927 kb on - strand, within ABZR87_RS06625at 1409.927 kb on - strand, within ABZR87_RS06625at 1410.056 kb on - strand, within ABZR87_RS06625at 1410.085 kb on + strand, within ABZR87_RS06625at 1410.085 kb on + strand, within ABZR87_RS06625at 1410.085 kb on + strand, within ABZR87_RS06625at 1410.085 kb on + strand, within ABZR87_RS06625at 1410.085 kb on + strand, within ABZR87_RS06625at 1410.085 kb on + strand, within ABZR87_RS06625at 1410.085 kb on + strand, within ABZR87_RS06625at 1410.085 kb on + strand, within ABZR87_RS06625at 1410.085 kb on + strand, within ABZR87_RS06625at 1410.085 kb on + strand, within ABZR87_RS06625at 1410.085 kb on + strand, within ABZR87_RS06625at 1410.086 kb on - strand, within ABZR87_RS06625at 1410.086 kb on - strand, within ABZR87_RS06625at 1410.086 kb on - strand, within ABZR87_RS06625at 1410.086 kb on - strand, within ABZR87_RS06625at 1410.086 kb on - strand, within ABZR87_RS06625at 1410.086 kb on - strand, within ABZR87_RS06625at 1410.086 kb on - strand, within ABZR87_RS06625at 1410.086 kb on - strand, within ABZR87_RS06625at 1410.086 kb on - strand, within ABZR87_RS06625at 1410.086 kb on - strand, within ABZR87_RS06625at 1410.086 kb on - strand, within ABZR87_RS06625at 1410.507 kb on + strandat 1410.507 kb on + strandat 1410.508 kb on - strandat 1410.508 kb on - strandat 1410.508 kb on - strandat 1410.730 kb on + strandat 1410.730 kb on + strandat 1410.731 kb on - strandat 1410.823 kb on - strand, within ABZR87_RS06630at 1410.823 kb on - strand, within ABZR87_RS06630at 1410.823 kb on - strand, within ABZR87_RS06630at 1410.856 kb on - strand, within ABZR87_RS06630at 1410.861 kb on + strand, within ABZR87_RS06630at 1410.861 kb on + strand, within ABZR87_RS06630at 1410.861 kb on + strand, within ABZR87_RS06630at 1410.861 kb on + strand, within ABZR87_RS06630at 1410.861 kb on + strand, within ABZR87_RS06630at 1410.862 kb on - strand, within ABZR87_RS06630at 1410.862 kb on - strand, within ABZR87_RS06630at 1410.862 kb on - strand, within ABZR87_RS06630at 1410.949 kb on - strand, within ABZR87_RS06630at 1410.990 kb on + strand, within ABZR87_RS06630at 1410.990 kb on + strand, within ABZR87_RS06630at 1410.990 kb on + strand, within ABZR87_RS06630at 1410.990 kb on + strand, within ABZR87_RS06630at 1410.990 kb on + strand, within ABZR87_RS06630at 1410.990 kb on + strand, within ABZR87_RS06630at 1410.990 kb on + strand, within ABZR87_RS06630at 1410.990 kb on + strand, within ABZR87_RS06630at 1410.990 kb on + strand, within ABZR87_RS06630at 1410.990 kb on + strand, within ABZR87_RS06630at 1410.990 kb on + strand, within ABZR87_RS06630at 1410.990 kb on + strand, within ABZR87_RS06630at 1410.991 kb on - strand, within ABZR87_RS06630at 1410.991 kb on - strand, within ABZR87_RS06630at 1410.991 kb on - strand, within ABZR87_RS06630at 1410.991 kb on - strand, within ABZR87_RS06630at 1410.991 kb on - strand, within ABZR87_RS06630at 1410.991 kb on - strand, within ABZR87_RS06630at 1410.991 kb on - strand, within ABZR87_RS06630at 1411.032 kb on + strand, within ABZR87_RS06630at 1411.032 kb on + strand, within ABZR87_RS06630at 1411.032 kb on + strand, within ABZR87_RS06630at 1411.032 kb on + strand, within ABZR87_RS06630at 1411.032 kb on + strand, within ABZR87_RS06630at 1411.033 kb on - strand, within ABZR87_RS06630at 1411.033 kb on - strand, within ABZR87_RS06630at 1411.033 kb on - strand, within ABZR87_RS06630at 1411.033 kb on - strand, within ABZR87_RS06630at 1411.033 kb on - strand, within ABZR87_RS06630at 1411.065 kb on + strand, within ABZR87_RS06630at 1411.065 kb on + strand, within ABZR87_RS06630at 1411.065 kb on + strand, within ABZR87_RS06630at 1411.065 kb on + strand, within ABZR87_RS06630at 1411.066 kb on - strand, within ABZR87_RS06630at 1411.066 kb on - strand, within ABZR87_RS06630at 1411.066 kb on - strand, within ABZR87_RS06630at 1411.066 kb on - strand, within ABZR87_RS06630at 1411.080 kb on + strand, within ABZR87_RS06630at 1411.080 kb on + strand, within ABZR87_RS06630at 1411.152 kb on + strand, within ABZR87_RS06630at 1411.152 kb on + strand, within ABZR87_RS06630at 1411.153 kb on - strand, within ABZR87_RS06630at 1411.153 kb on - strand, within ABZR87_RS06630at 1411.153 kb on - strand, within ABZR87_RS06630at 1411.153 kb on - strand, within ABZR87_RS06630at 1411.155 kb on + strand, within ABZR87_RS06630at 1411.155 kb on + strand, within ABZR87_RS06630at 1411.155 kb on + strand, within ABZR87_RS06630at 1411.155 kb on + strand, within ABZR87_RS06630at 1411.155 kb on + strand, within ABZR87_RS06630at 1411.156 kb on - strand, within ABZR87_RS06630at 1411.156 kb on - strand, within ABZR87_RS06630at 1411.156 kb on - strand, within ABZR87_RS06630at 1411.156 kb on - strand, within ABZR87_RS06630at 1411.156 kb on - strand, within ABZR87_RS06630at 1411.156 kb on - strand, within ABZR87_RS06630at 1411.156 kb on - strand, within ABZR87_RS06630at 1411.156 kb on - strand, within ABZR87_RS06630at 1411.156 kb on - strand, within ABZR87_RS06630at 1411.156 kb on - strand, within ABZR87_RS06630at 1411.377 kb on + strand, within ABZR87_RS06630at 1411.377 kb on + strand, within ABZR87_RS06630at 1411.377 kb on + strand, within ABZR87_RS06630at 1411.378 kb on - strand, within ABZR87_RS06630at 1411.378 kb on - strand, within ABZR87_RS06630at 1411.378 kb on - strand, within ABZR87_RS06630at 1411.378 kb on - strand, within ABZR87_RS06630at 1411.381 kb on - strand, within ABZR87_RS06630at 1411.381 kb on - strand, within ABZR87_RS06630at 1411.381 kb on - strand, within ABZR87_RS06630at 1411.381 kb on - strand, within ABZR87_RS06630at 1411.503 kb on + strand, within ABZR87_RS06630at 1411.504 kb on - strand, within ABZR87_RS06630at 1411.551 kb on + strand, within ABZR87_RS06630at 1411.551 kb on + strand, within ABZR87_RS06630at 1411.551 kb on + strand, within ABZR87_RS06630at 1411.551 kb on + strand, within ABZR87_RS06630at 1411.551 kb on + strand, within ABZR87_RS06630at 1411.551 kb on + strand, within ABZR87_RS06630at 1411.551 kb on + strand, within ABZR87_RS06630at 1411.551 kb on + strand, within ABZR87_RS06630at 1411.552 kb on - strand, within ABZR87_RS06630at 1411.552 kb on - strand, within ABZR87_RS06630at 1411.552 kb on - strand, within ABZR87_RS06630at 1411.552 kb on - strand, within ABZR87_RS06630at 1411.552 kb on - strand, within ABZR87_RS06630at 1411.644 kb on + strand, within ABZR87_RS06630at 1411.644 kb on + strand, within ABZR87_RS06630at 1411.645 kb on - strand, within ABZR87_RS06630at 1411.685 kb on + strand, within ABZR87_RS06630at 1411.710 kb on + strand, within ABZR87_RS06630at 1411.710 kb on + strand, within ABZR87_RS06630at 1411.710 kb on + strand, within ABZR87_RS06630at 1411.711 kb on - strand, within ABZR87_RS06630at 1412.291 kb on + strand, within ABZR87_RS06630at 1412.292 kb on - strand, within ABZR87_RS06630at 1412.292 kb on - strand, within ABZR87_RS06630at 1412.292 kb on - strand, within ABZR87_RS06630at 1412.292 kb on - strand, within ABZR87_RS06630at 1412.525 kb on + strandat 1412.526 kb on - strandat 1412.526 kb on - strandat 1412.540 kb on - strandat 1413.462 kb on + strand, within ABZR87_RS06635at 1413.463 kb on - strand, within ABZR87_RS06635at 1413.505 kb on + strand, within ABZR87_RS06635at 1413.505 kb on + strand, within ABZR87_RS06635at 1413.505 kb on + strand, within ABZR87_RS06635at 1413.505 kb on + strand, within ABZR87_RS06635at 1413.505 kb on + strand, within ABZR87_RS06635at 1413.506 kb on - strand, within ABZR87_RS06635at 1413.506 kb on - strand, within ABZR87_RS06635at 1413.506 kb on - strand, within ABZR87_RS06635at 1413.508 kb on + strand, within ABZR87_RS06635at 1413.508 kb on + strand, within ABZR87_RS06635at 1413.508 kb on + strand, within ABZR87_RS06635

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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1,409,794 + ABZR87_RS06625 0.49 +0.5
1,409,794 + ABZR87_RS06625 0.49 -0.7
1,409,794 + ABZR87_RS06625 0.49 +0.9
1,409,795 - ABZR87_RS06625 0.49 -0.1
1,409,795 - ABZR87_RS06625 0.49 +0.5
1,409,795 - ABZR87_RS06625 0.49 -1.7
1,409,842 + ABZR87_RS06625 0.53 +0.1
1,409,842 + ABZR87_RS06625 0.53 -1.3
1,409,843 - ABZR87_RS06625 0.53 +1.0
1,409,926 + ABZR87_RS06625 0.59 -1.6
1,409,926 + ABZR87_RS06625 0.59 -2.4
1,409,927 - ABZR87_RS06625 0.59 -0.6
1,409,927 - ABZR87_RS06625 0.59 -0.6
1,410,056 - ABZR87_RS06625 0.69 -0.7
1,410,085 + ABZR87_RS06625 0.71 +0.1
1,410,085 + ABZR87_RS06625 0.71 -0.8
1,410,085 + ABZR87_RS06625 0.71 -2.5
1,410,085 + ABZR87_RS06625 0.71 -2.2
1,410,085 + ABZR87_RS06625 0.71 -3.2
1,410,085 + ABZR87_RS06625 0.71 +0.0
1,410,085 + ABZR87_RS06625 0.71 -0.9
1,410,085 + ABZR87_RS06625 0.71 -1.0
1,410,085 + ABZR87_RS06625 0.71 -0.7
1,410,085 + ABZR87_RS06625 0.71 -1.5
1,410,085 + ABZR87_RS06625 0.71 -1.6
1,410,086 - ABZR87_RS06625 0.71 +1.1
1,410,086 - ABZR87_RS06625 0.71 -1.0
1,410,086 - ABZR87_RS06625 0.71 -1.3
1,410,086 - ABZR87_RS06625 0.71 -0.0
1,410,086 - ABZR87_RS06625 0.71 -0.9
1,410,086 - ABZR87_RS06625 0.71 -3.5
1,410,086 - ABZR87_RS06625 0.71 -2.5
1,410,086 - ABZR87_RS06625 0.71 -0.7
1,410,086 - ABZR87_RS06625 0.71 +0.1
1,410,086 - ABZR87_RS06625 0.71 -0.6
1,410,086 - ABZR87_RS06625 0.71 -0.8
1,410,507 + +0.5
1,410,507 + -0.6
1,410,508 - +0.7
1,410,508 - -0.5
1,410,508 - +0.2
1,410,730 + +0.3
1,410,730 + +0.1
1,410,731 - +0.2
1,410,823 - ABZR87_RS06630 0.13 -0.5
1,410,823 - ABZR87_RS06630 0.13 -0.9
1,410,823 - ABZR87_RS06630 0.13 +0.6
1,410,856 - ABZR87_RS06630 0.15 -0.2
1,410,861 + ABZR87_RS06630 0.15 -0.5
1,410,861 + ABZR87_RS06630 0.15 -0.2
1,410,861 + ABZR87_RS06630 0.15 +0.5
1,410,861 + ABZR87_RS06630 0.15 -0.1
1,410,861 + ABZR87_RS06630 0.15 +1.5
1,410,862 - ABZR87_RS06630 0.15 -1.1
1,410,862 - ABZR87_RS06630 0.15 -0.1
1,410,862 - ABZR87_RS06630 0.15 -1.5
1,410,949 - ABZR87_RS06630 0.20 +0.6
1,410,990 + ABZR87_RS06630 0.22 -0.2
1,410,990 + ABZR87_RS06630 0.22 -0.6
1,410,990 + ABZR87_RS06630 0.22 +0.5
1,410,990 + ABZR87_RS06630 0.22 -0.7
1,410,990 + ABZR87_RS06630 0.22 -1.9
1,410,990 + ABZR87_RS06630 0.22 +0.9
1,410,990 + ABZR87_RS06630 0.22 -0.9
1,410,990 + ABZR87_RS06630 0.22 +0.7
1,410,990 + ABZR87_RS06630 0.22 -0.7
1,410,990 + ABZR87_RS06630 0.22 +1.2
1,410,990 + ABZR87_RS06630 0.22 +0.7
1,410,990 + ABZR87_RS06630 0.22 -0.1
1,410,991 - ABZR87_RS06630 0.22 -1.4
1,410,991 - ABZR87_RS06630 0.22 +0.2
1,410,991 - ABZR87_RS06630 0.22 +0.7
1,410,991 - ABZR87_RS06630 0.22 -0.6
1,410,991 - ABZR87_RS06630 0.22 +0.2
1,410,991 - ABZR87_RS06630 0.22 +1.1
1,410,991 - ABZR87_RS06630 0.22 -1.4
1,411,032 + ABZR87_RS06630 0.24 -0.3
1,411,032 + ABZR87_RS06630 0.24 -1.5
1,411,032 + ABZR87_RS06630 0.24 -0.8
1,411,032 + ABZR87_RS06630 0.24 +0.4
1,411,032 + ABZR87_RS06630 0.24 -0.5
1,411,033 - ABZR87_RS06630 0.24 -0.6
1,411,033 - ABZR87_RS06630 0.24 +0.0
1,411,033 - ABZR87_RS06630 0.24 -0.3
1,411,033 - ABZR87_RS06630 0.24 -2.1
1,411,033 - ABZR87_RS06630 0.24 +0.0
1,411,065 + ABZR87_RS06630 0.25 +0.2
1,411,065 + ABZR87_RS06630 0.25 -0.8
1,411,065 + ABZR87_RS06630 0.25 +0.2
1,411,065 + ABZR87_RS06630 0.25 +1.2
1,411,066 - ABZR87_RS06630 0.25 -2.0
1,411,066 - ABZR87_RS06630 0.25 +1.1
1,411,066 - ABZR87_RS06630 0.25 -2.9
1,411,066 - ABZR87_RS06630 0.25 +0.5
1,411,080 + ABZR87_RS06630 0.26 +0.4
1,411,080 + ABZR87_RS06630 0.26 +0.0
1,411,152 + ABZR87_RS06630 0.30 +0.5
1,411,152 + ABZR87_RS06630 0.30 +0.6
1,411,153 - ABZR87_RS06630 0.30 -0.2
1,411,153 - ABZR87_RS06630 0.30 +0.8
1,411,153 - ABZR87_RS06630 0.30 +0.0
1,411,153 - ABZR87_RS06630 0.30 +0.2
1,411,155 + ABZR87_RS06630 0.30 +0.4
1,411,155 + ABZR87_RS06630 0.30 +3.5
1,411,155 + ABZR87_RS06630 0.30 +1.3
1,411,155 + ABZR87_RS06630 0.30 -0.6
1,411,155 + ABZR87_RS06630 0.30 +0.0
1,411,156 - ABZR87_RS06630 0.30 +0.1
1,411,156 - ABZR87_RS06630 0.30 +0.0
1,411,156 - ABZR87_RS06630 0.30 -0.7
1,411,156 - ABZR87_RS06630 0.30 -0.7
1,411,156 - ABZR87_RS06630 0.30 -1.3
1,411,156 - ABZR87_RS06630 0.30 -0.0
1,411,156 - ABZR87_RS06630 0.30 +0.2
1,411,156 - ABZR87_RS06630 0.30 +1.9
1,411,156 - ABZR87_RS06630 0.30 -0.2
1,411,156 - ABZR87_RS06630 0.30 +0.2
1,411,377 + ABZR87_RS06630 0.41 +0.0
1,411,377 + ABZR87_RS06630 0.41 +0.3
1,411,377 + ABZR87_RS06630 0.41 -0.5
1,411,378 - ABZR87_RS06630 0.41 +0.3
1,411,378 - ABZR87_RS06630 0.41 -0.7
1,411,378 - ABZR87_RS06630 0.41 -2.2
1,411,378 - ABZR87_RS06630 0.41 +0.2
1,411,381 - ABZR87_RS06630 0.41 -1.9
1,411,381 - ABZR87_RS06630 0.41 -0.9
1,411,381 - ABZR87_RS06630 0.41 -0.0
1,411,381 - ABZR87_RS06630 0.41 -0.5
1,411,503 + ABZR87_RS06630 0.47 +0.8
1,411,504 - ABZR87_RS06630 0.47 +0.4
1,411,551 + ABZR87_RS06630 0.49 +0.9
1,411,551 + ABZR87_RS06630 0.49 +0.4
1,411,551 + ABZR87_RS06630 0.49 +0.7
1,411,551 + ABZR87_RS06630 0.49 -0.7
1,411,551 + ABZR87_RS06630 0.49 +0.8
1,411,551 + ABZR87_RS06630 0.49 +0.5
1,411,551 + ABZR87_RS06630 0.49 +1.4
1,411,551 + ABZR87_RS06630 0.49 +1.2
1,411,552 - ABZR87_RS06630 0.49 -0.7
1,411,552 - ABZR87_RS06630 0.49 -1.6
1,411,552 - ABZR87_RS06630 0.49 +1.9
1,411,552 - ABZR87_RS06630 0.49 -0.8
1,411,552 - ABZR87_RS06630 0.49 -0.8
1,411,644 + ABZR87_RS06630 0.54 +1.3
1,411,644 + ABZR87_RS06630 0.54 -0.4
1,411,645 - ABZR87_RS06630 0.54 -1.8
1,411,685 + ABZR87_RS06630 0.56 +0.5
1,411,710 + ABZR87_RS06630 0.57 -0.5
1,411,710 + ABZR87_RS06630 0.57 +1.1
1,411,710 + ABZR87_RS06630 0.57 +0.4
1,411,711 - ABZR87_RS06630 0.57 -0.8
1,412,291 + ABZR87_RS06630 0.86 +2.6
1,412,292 - ABZR87_RS06630 0.86 +0.7
1,412,292 - ABZR87_RS06630 0.86 +0.1
1,412,292 - ABZR87_RS06630 0.86 -0.2
1,412,292 - ABZR87_RS06630 0.86 +0.6
1,412,525 + +0.9
1,412,526 - +0.4
1,412,526 - -0.1
1,412,540 - +0.1
1,413,462 + ABZR87_RS06635 0.66 +0.9
1,413,463 - ABZR87_RS06635 0.66 +0.2
1,413,505 + ABZR87_RS06635 0.69 -1.6
1,413,505 + ABZR87_RS06635 0.69 -0.1
1,413,505 + ABZR87_RS06635 0.69 -0.8
1,413,505 + ABZR87_RS06635 0.69 -0.2
1,413,505 + ABZR87_RS06635 0.69 -0.7
1,413,506 - ABZR87_RS06635 0.69 -1.6
1,413,506 - ABZR87_RS06635 0.69 +1.7
1,413,506 - ABZR87_RS06635 0.69 -1.0
1,413,508 + ABZR87_RS06635 0.69 -1.0
1,413,508 + ABZR87_RS06635 0.69 -0.1
1,413,508 + ABZR87_RS06635 0.69 -0.3

Or see this region's nucleotide sequence