Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06505

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06495 and ABZR87_RS06500 are separated by 4 nucleotidesABZR87_RS06500 and ABZR87_RS06505 are separated by 101 nucleotidesABZR87_RS06505 and ABZR87_RS06510 overlap by 4 nucleotides ABZR87_RS06495: ABZR87_RS06495 - D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase, at 1,383,082 to 1,383,579 _RS06495 ABZR87_RS06500: ABZR87_RS06500 - SPOR domain-containing protein, at 1,383,584 to 1,384,357 _RS06500 ABZR87_RS06505: ABZR87_RS06505 - type III pantothenate kinase, at 1,384,459 to 1,385,340 _RS06505 ABZR87_RS06510: ABZR87_RS06510 - biotin--[acetyl-CoA-carboxylase] ligase, at 1,385,337 to 1,386,218 _RS06510 Position (kb) 1384 1385 1386Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1383.492 kb on + strand, within ABZR87_RS06495at 1383.493 kb on - strand, within ABZR87_RS06495at 1383.493 kb on - strand, within ABZR87_RS06495at 1383.493 kb on - strand, within ABZR87_RS06495at 1383.586 kb on - strandat 1383.832 kb on + strand, within ABZR87_RS06500at 1383.832 kb on + strand, within ABZR87_RS06500at 1383.832 kb on + strand, within ABZR87_RS06500at 1383.832 kb on + strand, within ABZR87_RS06500at 1383.832 kb on + strand, within ABZR87_RS06500at 1383.833 kb on - strand, within ABZR87_RS06500at 1383.833 kb on - strand, within ABZR87_RS06500at 1383.833 kb on - strand, within ABZR87_RS06500at 1384.158 kb on - strand, within ABZR87_RS06500at 1384.420 kb on + strandat 1384.421 kb on - strandat 1384.460 kb on + strandat 1384.461 kb on - strandat 1386.171 kb on - strandat 1386.218 kb on + strandat 1386.218 kb on + strandat 1386.218 kb on + strandat 1386.218 kb on + strandat 1386.219 kb on - strandat 1386.219 kb on - strandat 1386.219 kb on - strandat 1386.219 kb on - strandat 1386.219 kb on - strandat 1386.219 kb on - strandat 1386.219 kb on - strandat 1386.262 kb on + strandat 1386.262 kb on + strandat 1386.263 kb on - strandat 1386.263 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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1,383,492 + ABZR87_RS06495 0.82 +1.5
1,383,493 - ABZR87_RS06495 0.83 -1.6
1,383,493 - ABZR87_RS06495 0.83 -3.8
1,383,493 - ABZR87_RS06495 0.83 -0.0
1,383,586 - -0.1
1,383,832 + ABZR87_RS06500 0.32 +0.1
1,383,832 + ABZR87_RS06500 0.32 -0.7
1,383,832 + ABZR87_RS06500 0.32 -0.4
1,383,832 + ABZR87_RS06500 0.32 +0.8
1,383,832 + ABZR87_RS06500 0.32 -0.1
1,383,833 - ABZR87_RS06500 0.32 -2.1
1,383,833 - ABZR87_RS06500 0.32 +0.9
1,383,833 - ABZR87_RS06500 0.32 +0.2
1,384,158 - ABZR87_RS06500 0.74 +1.5
1,384,420 + -1.8
1,384,421 - +0.3
1,384,460 + -0.4
1,384,461 - -0.5
1,386,171 - -0.8
1,386,218 + -1.5
1,386,218 + -0.8
1,386,218 + -0.1
1,386,218 + -0.1
1,386,219 - +0.4
1,386,219 - -1.1
1,386,219 - +0.9
1,386,219 - -0.4
1,386,219 - -0.5
1,386,219 - +0.1
1,386,219 - -0.6
1,386,262 + +0.7
1,386,262 + +0.3
1,386,263 - +0.4
1,386,263 - +0.3

Or see this region's nucleotide sequence