Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05635

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05630 and ABZR87_RS05635 are separated by 97 nucleotidesABZR87_RS05635 and ABZR87_RS05640 are separated by 4 nucleotides ABZR87_RS05630: ABZR87_RS05630 - M48 family metallopeptidase, at 1,195,592 to 1,196,536 _RS05630 ABZR87_RS05635: ABZR87_RS05635 - muropeptide transporter, at 1,196,634 to 1,197,923 _RS05635 ABZR87_RS05640: ABZR87_RS05640 - class I SAM-dependent methyltransferase, at 1,197,928 to 1,199,121 _RS05640 Position (kb) 1196 1197 1198Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1195.634 kb on - strandat 1195.634 kb on - strandat 1195.634 kb on - strandat 1195.656 kb on + strandat 1195.656 kb on + strandat 1195.656 kb on + strandat 1195.656 kb on + strandat 1195.657 kb on - strandat 1195.657 kb on - strandat 1195.657 kb on - strandat 1195.657 kb on - strandat 1195.657 kb on - strandat 1195.674 kb on + strandat 1195.699 kb on + strand, within ABZR87_RS05630at 1195.699 kb on + strand, within ABZR87_RS05630at 1195.700 kb on - strand, within ABZR87_RS05630at 1195.751 kb on + strand, within ABZR87_RS05630at 1195.751 kb on + strand, within ABZR87_RS05630at 1195.752 kb on - strand, within ABZR87_RS05630at 1195.788 kb on - strand, within ABZR87_RS05630at 1196.177 kb on + strand, within ABZR87_RS05630at 1196.177 kb on + strand, within ABZR87_RS05630at 1196.177 kb on + strand, within ABZR87_RS05630at 1196.177 kb on + strand, within ABZR87_RS05630at 1196.177 kb on + strand, within ABZR87_RS05630at 1196.177 kb on + strand, within ABZR87_RS05630at 1196.178 kb on - strand, within ABZR87_RS05630at 1196.178 kb on - strand, within ABZR87_RS05630at 1196.349 kb on + strand, within ABZR87_RS05630at 1196.489 kb on + strandat 1196.490 kb on - strandat 1196.490 kb on - strandat 1196.536 kb on + strandat 1196.536 kb on + strandat 1196.536 kb on + strandat 1196.536 kb on + strandat 1196.536 kb on + strandat 1196.536 kb on + strandat 1196.536 kb on + strandat 1196.537 kb on - strandat 1196.537 kb on - strandat 1196.537 kb on - strandat 1196.537 kb on - strandat 1196.537 kb on - strandat 1196.537 kb on - strandat 1196.565 kb on + strandat 1196.565 kb on + strandat 1196.565 kb on + strandat 1196.565 kb on + strandat 1196.565 kb on + strandat 1196.565 kb on + strandat 1196.566 kb on - strandat 1196.566 kb on - strandat 1196.566 kb on - strandat 1196.566 kb on - strandat 1196.566 kb on - strandat 1196.566 kb on - strandat 1196.568 kb on + strandat 1196.593 kb on + strandat 1196.593 kb on + strandat 1196.593 kb on + strandat 1196.593 kb on + strandat 1196.593 kb on + strandat 1196.594 kb on - strandat 1196.594 kb on - strandat 1196.594 kb on - strandat 1196.649 kb on + strandat 1196.650 kb on - strandat 1196.650 kb on - strandat 1196.650 kb on - strandat 1196.658 kb on - strandat 1196.658 kb on - strandat 1196.658 kb on - strandat 1196.811 kb on + strand, within ABZR87_RS05635at 1196.811 kb on + strand, within ABZR87_RS05635at 1196.811 kb on + strand, within ABZR87_RS05635at 1196.811 kb on + strand, within ABZR87_RS05635at 1196.811 kb on + strand, within ABZR87_RS05635at 1196.811 kb on + strand, within ABZR87_RS05635at 1196.811 kb on + strand, within ABZR87_RS05635at 1196.811 kb on + strand, within ABZR87_RS05635at 1196.811 kb on + strand, within ABZR87_RS05635at 1196.811 kb on + strand, within ABZR87_RS05635at 1196.811 kb on + strand, within ABZR87_RS05635at 1196.812 kb on - strand, within ABZR87_RS05635at 1196.812 kb on - strand, within ABZR87_RS05635at 1196.812 kb on - strand, within ABZR87_RS05635at 1196.812 kb on - strand, within ABZR87_RS05635at 1196.812 kb on - strand, within ABZR87_RS05635at 1196.812 kb on - strand, within ABZR87_RS05635at 1196.812 kb on - strand, within ABZR87_RS05635at 1196.812 kb on - strand, within ABZR87_RS05635at 1196.812 kb on - strand, within ABZR87_RS05635at 1196.812 kb on - strand, within ABZR87_RS05635at 1196.812 kb on - strand, within ABZR87_RS05635at 1197.027 kb on + strand, within ABZR87_RS05635at 1197.027 kb on + strand, within ABZR87_RS05635at 1197.027 kb on + strand, within ABZR87_RS05635at 1197.027 kb on + strand, within ABZR87_RS05635at 1197.027 kb on + strand, within ABZR87_RS05635at 1197.028 kb on - strand, within ABZR87_RS05635at 1197.028 kb on - strand, within ABZR87_RS05635at 1197.028 kb on - strand, within ABZR87_RS05635at 1197.028 kb on - strand, within ABZR87_RS05635at 1197.028 kb on - strand, within ABZR87_RS05635at 1197.129 kb on + strand, within ABZR87_RS05635at 1197.129 kb on + strand, within ABZR87_RS05635at 1197.129 kb on + strand, within ABZR87_RS05635at 1197.129 kb on + strand, within ABZR87_RS05635at 1197.130 kb on - strand, within ABZR87_RS05635at 1197.130 kb on - strand, within ABZR87_RS05635at 1197.130 kb on - strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.165 kb on + strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.166 kb on - strand, within ABZR87_RS05635at 1197.197 kb on + strand, within ABZR87_RS05635at 1197.197 kb on + strand, within ABZR87_RS05635at 1197.197 kb on + strand, within ABZR87_RS05635at 1197.336 kb on + strand, within ABZR87_RS05635at 1197.337 kb on - strand, within ABZR87_RS05635at 1197.337 kb on - strand, within ABZR87_RS05635at 1197.337 kb on - strand, within ABZR87_RS05635at 1197.468 kb on + strand, within ABZR87_RS05635at 1197.468 kb on + strand, within ABZR87_RS05635at 1197.468 kb on + strand, within ABZR87_RS05635at 1197.468 kb on + strand, within ABZR87_RS05635at 1197.468 kb on + strand, within ABZR87_RS05635at 1197.468 kb on + strand, within ABZR87_RS05635at 1197.469 kb on - strand, within ABZR87_RS05635at 1197.469 kb on - strand, within ABZR87_RS05635at 1197.469 kb on - strand, within ABZR87_RS05635at 1197.469 kb on - strand, within ABZR87_RS05635at 1197.469 kb on - strand, within ABZR87_RS05635at 1197.469 kb on - strand, within ABZR87_RS05635at 1197.469 kb on - strand, within ABZR87_RS05635at 1197.469 kb on - strand, within ABZR87_RS05635at 1197.553 kb on - strand, within ABZR87_RS05635at 1197.553 kb on - strand, within ABZR87_RS05635at 1197.696 kb on + strand, within ABZR87_RS05635at 1197.696 kb on + strand, within ABZR87_RS05635at 1197.696 kb on + strand, within ABZR87_RS05635at 1197.696 kb on + strand, within ABZR87_RS05635at 1197.697 kb on - strand, within ABZR87_RS05635at 1197.697 kb on - strand, within ABZR87_RS05635at 1197.697 kb on - strand, within ABZR87_RS05635at 1197.697 kb on - strand, within ABZR87_RS05635at 1197.703 kb on - strand, within ABZR87_RS05635at 1197.735 kb on + strand, within ABZR87_RS05635at 1197.735 kb on + strand, within ABZR87_RS05635at 1197.735 kb on + strand, within ABZR87_RS05635at 1197.735 kb on + strand, within ABZR87_RS05635at 1197.735 kb on + strand, within ABZR87_RS05635at 1197.736 kb on - strand, within ABZR87_RS05635at 1197.736 kb on - strand, within ABZR87_RS05635at 1197.756 kb on + strand, within ABZR87_RS05635at 1197.771 kb on + strand, within ABZR87_RS05635at 1197.771 kb on + strand, within ABZR87_RS05635at 1197.771 kb on + strand, within ABZR87_RS05635at 1197.772 kb on - strand, within ABZR87_RS05635at 1197.789 kb on + strand, within ABZR87_RS05635at 1197.790 kb on - strand, within ABZR87_RS05635at 1197.790 kb on - strand, within ABZR87_RS05635at 1197.930 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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1,195,634 - +0.1
1,195,634 - -1.0
1,195,634 - +0.5
1,195,656 + +0.4
1,195,656 + +0.5
1,195,656 + +0.9
1,195,656 + -0.1
1,195,657 - -1.2
1,195,657 - -0.8
1,195,657 - -0.3
1,195,657 - -0.5
1,195,657 - +0.5
1,195,674 + +1.5
1,195,699 + ABZR87_RS05630 0.11 -0.3
1,195,699 + ABZR87_RS05630 0.11 +0.2
1,195,700 - ABZR87_RS05630 0.11 -1.2
1,195,751 + ABZR87_RS05630 0.17 -0.6
1,195,751 + ABZR87_RS05630 0.17 +1.2
1,195,752 - ABZR87_RS05630 0.17 -1.6
1,195,788 - ABZR87_RS05630 0.21 -2.2
1,196,177 + ABZR87_RS05630 0.62 +0.4
1,196,177 + ABZR87_RS05630 0.62 +0.8
1,196,177 + ABZR87_RS05630 0.62 +0.0
1,196,177 + ABZR87_RS05630 0.62 -0.2
1,196,177 + ABZR87_RS05630 0.62 -1.0
1,196,177 + ABZR87_RS05630 0.62 -1.0
1,196,178 - ABZR87_RS05630 0.62 +0.4
1,196,178 - ABZR87_RS05630 0.62 -1.1
1,196,349 + ABZR87_RS05630 0.80 -1.7
1,196,489 + +0.6
1,196,490 - +0.1
1,196,490 - -0.5
1,196,536 + -1.2
1,196,536 + -0.0
1,196,536 + +1.0
1,196,536 + +0.6
1,196,536 + -0.9
1,196,536 + -1.1
1,196,536 + +0.4
1,196,537 - +0.4
1,196,537 - -1.6
1,196,537 - -1.3
1,196,537 - +1.0
1,196,537 - +0.5
1,196,537 - -0.4
1,196,565 + +0.3
1,196,565 + -0.5
1,196,565 + +0.6
1,196,565 + +0.8
1,196,565 + +0.5
1,196,565 + +1.6
1,196,566 - -0.7
1,196,566 - -0.6
1,196,566 - -0.3
1,196,566 - +0.4
1,196,566 - -0.3
1,196,566 - +0.1
1,196,568 + +1.1
1,196,593 + -1.0
1,196,593 + +0.1
1,196,593 + -0.2
1,196,593 + -3.0
1,196,593 + -0.1
1,196,594 - -0.9
1,196,594 - -1.9
1,196,594 - -1.3
1,196,649 + +0.5
1,196,650 - -4.0
1,196,650 - -2.7
1,196,650 - -1.0
1,196,658 - -2.0
1,196,658 - -3.4
1,196,658 - -3.3
1,196,811 + ABZR87_RS05635 0.14 -3.8
1,196,811 + ABZR87_RS05635 0.14 -4.3
1,196,811 + ABZR87_RS05635 0.14 -2.1
1,196,811 + ABZR87_RS05635 0.14 -2.2
1,196,811 + ABZR87_RS05635 0.14 -1.9
1,196,811 + ABZR87_RS05635 0.14 -3.5
1,196,811 + ABZR87_RS05635 0.14 -4.2
1,196,811 + ABZR87_RS05635 0.14 -4.4
1,196,811 + ABZR87_RS05635 0.14 -4.5
1,196,811 + ABZR87_RS05635 0.14 -2.1
1,196,811 + ABZR87_RS05635 0.14 -3.8
1,196,812 - ABZR87_RS05635 0.14 -3.1
1,196,812 - ABZR87_RS05635 0.14 -3.4
1,196,812 - ABZR87_RS05635 0.14 -3.5
1,196,812 - ABZR87_RS05635 0.14 -3.9
1,196,812 - ABZR87_RS05635 0.14 -4.2
1,196,812 - ABZR87_RS05635 0.14 -1.9
1,196,812 - ABZR87_RS05635 0.14 -2.5
1,196,812 - ABZR87_RS05635 0.14 -2.4
1,196,812 - ABZR87_RS05635 0.14 -2.1
1,196,812 - ABZR87_RS05635 0.14 -3.8
1,196,812 - ABZR87_RS05635 0.14 -3.8
1,197,027 + ABZR87_RS05635 0.30 -2.3
1,197,027 + ABZR87_RS05635 0.30 -2.4
1,197,027 + ABZR87_RS05635 0.30 -2.3
1,197,027 + ABZR87_RS05635 0.30 -3.8
1,197,027 + ABZR87_RS05635 0.30 -3.8
1,197,028 - ABZR87_RS05635 0.31 +0.6
1,197,028 - ABZR87_RS05635 0.31 -2.8
1,197,028 - ABZR87_RS05635 0.31 -3.8
1,197,028 - ABZR87_RS05635 0.31 -2.9
1,197,028 - ABZR87_RS05635 0.31 -3.7
1,197,129 + ABZR87_RS05635 0.38 -1.0
1,197,129 + ABZR87_RS05635 0.38 -0.9
1,197,129 + ABZR87_RS05635 0.38 -0.3
1,197,129 + ABZR87_RS05635 0.38 -4.3
1,197,130 - ABZR87_RS05635 0.38 -1.6
1,197,130 - ABZR87_RS05635 0.38 -1.2
1,197,130 - ABZR87_RS05635 0.38 -3.7
1,197,165 + ABZR87_RS05635 0.41 -3.5
1,197,165 + ABZR87_RS05635 0.41 -3.4
1,197,165 + ABZR87_RS05635 0.41 -4.5
1,197,165 + ABZR87_RS05635 0.41 -2.3
1,197,165 + ABZR87_RS05635 0.41 -4.5
1,197,165 + ABZR87_RS05635 0.41 -2.7
1,197,165 + ABZR87_RS05635 0.41 -3.0
1,197,165 + ABZR87_RS05635 0.41 -3.1
1,197,165 + ABZR87_RS05635 0.41 -2.6
1,197,165 + ABZR87_RS05635 0.41 -4.4
1,197,165 + ABZR87_RS05635 0.41 -3.7
1,197,165 + ABZR87_RS05635 0.41 -3.7
1,197,165 + ABZR87_RS05635 0.41 +0.6
1,197,165 + ABZR87_RS05635 0.41 -2.2
1,197,165 + ABZR87_RS05635 0.41 -4.4
1,197,165 + ABZR87_RS05635 0.41 -0.7
1,197,166 - ABZR87_RS05635 0.41 -0.7
1,197,166 - ABZR87_RS05635 0.41 -2.4
1,197,166 - ABZR87_RS05635 0.41 -2.8
1,197,166 - ABZR87_RS05635 0.41 -2.0
1,197,166 - ABZR87_RS05635 0.41 -4.1
1,197,166 - ABZR87_RS05635 0.41 -3.8
1,197,166 - ABZR87_RS05635 0.41 -4.2
1,197,166 - ABZR87_RS05635 0.41 -4.3
1,197,166 - ABZR87_RS05635 0.41 -4.0
1,197,166 - ABZR87_RS05635 0.41 -4.3
1,197,166 - ABZR87_RS05635 0.41 -2.7
1,197,166 - ABZR87_RS05635 0.41 -2.4
1,197,166 - ABZR87_RS05635 0.41 -4.1
1,197,166 - ABZR87_RS05635 0.41 -4.1
1,197,197 + ABZR87_RS05635 0.44 -2.6
1,197,197 + ABZR87_RS05635 0.44 -4.2
1,197,197 + ABZR87_RS05635 0.44 -4.3
1,197,336 + ABZR87_RS05635 0.54 -4.2
1,197,337 - ABZR87_RS05635 0.54 -2.2
1,197,337 - ABZR87_RS05635 0.54 -1.7
1,197,337 - ABZR87_RS05635 0.54 -1.5
1,197,468 + ABZR87_RS05635 0.65 -4.5
1,197,468 + ABZR87_RS05635 0.65 -1.1
1,197,468 + ABZR87_RS05635 0.65 -2.1
1,197,468 + ABZR87_RS05635 0.65 -3.9
1,197,468 + ABZR87_RS05635 0.65 -3.8
1,197,468 + ABZR87_RS05635 0.65 -2.7
1,197,469 - ABZR87_RS05635 0.65 -2.7
1,197,469 - ABZR87_RS05635 0.65 -3.2
1,197,469 - ABZR87_RS05635 0.65 -3.3
1,197,469 - ABZR87_RS05635 0.65 -2.5
1,197,469 - ABZR87_RS05635 0.65 -3.4
1,197,469 - ABZR87_RS05635 0.65 -3.5
1,197,469 - ABZR87_RS05635 0.65 -2.7
1,197,469 - ABZR87_RS05635 0.65 -2.1
1,197,553 - ABZR87_RS05635 0.71 -3.3
1,197,553 - ABZR87_RS05635 0.71 -3.4
1,197,696 + ABZR87_RS05635 0.82 -3.9
1,197,696 + ABZR87_RS05635 0.82 -3.3
1,197,696 + ABZR87_RS05635 0.82 -1.5
1,197,696 + ABZR87_RS05635 0.82 -4.2
1,197,697 - ABZR87_RS05635 0.82 -4.4
1,197,697 - ABZR87_RS05635 0.82 -1.1
1,197,697 - ABZR87_RS05635 0.82 -4.8
1,197,697 - ABZR87_RS05635 0.82 -2.5
1,197,703 - ABZR87_RS05635 0.83 -3.2
1,197,735 + ABZR87_RS05635 0.85 -2.3
1,197,735 + ABZR87_RS05635 0.85 -1.9
1,197,735 + ABZR87_RS05635 0.85 -4.1
1,197,735 + ABZR87_RS05635 0.85 -2.5
1,197,735 + ABZR87_RS05635 0.85 -3.9
1,197,736 - ABZR87_RS05635 0.85 -4.7
1,197,736 - ABZR87_RS05635 0.85 -1.9
1,197,756 + ABZR87_RS05635 0.87 -3.7
1,197,771 + ABZR87_RS05635 0.88 -3.7
1,197,771 + ABZR87_RS05635 0.88 -3.7
1,197,771 + ABZR87_RS05635 0.88 -3.1
1,197,772 - ABZR87_RS05635 0.88 -2.9
1,197,789 + ABZR87_RS05635 0.90 -4.4
1,197,790 - ABZR87_RS05635 0.90 -1.6
1,197,790 - ABZR87_RS05635 0.90 -3.0
1,197,930 - +0.8

Or see this region's nucleotide sequence