Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04810

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04805 and ABZR87_RS04810 are separated by 125 nucleotidesABZR87_RS04810 and ABZR87_RS04815 are separated by 223 nucleotides ABZR87_RS04805: ABZR87_RS04805 - thiamine phosphate synthase, at 1,007,351 to 1,008,505 _RS04805 ABZR87_RS04810: ABZR87_RS04810 - VOC family protein, at 1,008,631 to 1,009,110 _RS04810 ABZR87_RS04815: ABZR87_RS04815 - DUF3274 domain-containing protein, at 1,009,334 to 1,011,727 _RS04815 Position (kb) 1008 1009 1010Strain fitness (log2 ratio) -3 -2 -1 0 1at 1008.462 kb on + strandat 1008.462 kb on + strandat 1008.462 kb on + strandat 1008.503 kb on + strandat 1008.504 kb on - strandat 1008.504 kb on - strandat 1008.504 kb on - strandat 1008.562 kb on + strandat 1008.562 kb on + strandat 1008.563 kb on - strandat 1008.563 kb on - strandat 1008.563 kb on - strandat 1008.658 kb on + strandat 1008.715 kb on + strand, within ABZR87_RS04810at 1008.715 kb on + strand, within ABZR87_RS04810at 1008.715 kb on + strand, within ABZR87_RS04810at 1008.715 kb on + strand, within ABZR87_RS04810at 1008.715 kb on + strand, within ABZR87_RS04810at 1008.716 kb on - strand, within ABZR87_RS04810at 1008.716 kb on - strand, within ABZR87_RS04810at 1008.716 kb on - strand, within ABZR87_RS04810at 1008.716 kb on - strand, within ABZR87_RS04810at 1008.716 kb on - strand, within ABZR87_RS04810at 1008.716 kb on - strand, within ABZR87_RS04810at 1008.716 kb on - strand, within ABZR87_RS04810at 1008.716 kb on - strand, within ABZR87_RS04810at 1008.716 kb on - strand, within ABZR87_RS04810at 1008.717 kb on + strand, within ABZR87_RS04810at 1008.717 kb on + strand, within ABZR87_RS04810at 1008.717 kb on + strand, within ABZR87_RS04810at 1008.717 kb on + strand, within ABZR87_RS04810at 1008.717 kb on + strand, within ABZR87_RS04810at 1008.717 kb on + strand, within ABZR87_RS04810at 1008.718 kb on - strand, within ABZR87_RS04810at 1008.889 kb on + strand, within ABZR87_RS04810at 1008.889 kb on + strand, within ABZR87_RS04810at 1008.889 kb on + strand, within ABZR87_RS04810at 1008.889 kb on + strand, within ABZR87_RS04810at 1008.889 kb on + strand, within ABZR87_RS04810at 1008.889 kb on + strand, within ABZR87_RS04810at 1008.889 kb on + strand, within ABZR87_RS04810at 1008.889 kb on + strand, within ABZR87_RS04810at 1008.889 kb on + strand, within ABZR87_RS04810at 1008.890 kb on - strand, within ABZR87_RS04810at 1008.890 kb on - strand, within ABZR87_RS04810at 1008.890 kb on - strand, within ABZR87_RS04810at 1008.890 kb on - strand, within ABZR87_RS04810at 1008.890 kb on - strand, within ABZR87_RS04810at 1008.890 kb on - strand, within ABZR87_RS04810at 1008.890 kb on - strand, within ABZR87_RS04810at 1008.890 kb on - strand, within ABZR87_RS04810at 1008.890 kb on - strand, within ABZR87_RS04810at 1008.894 kb on - strand, within ABZR87_RS04810at 1008.894 kb on - strand, within ABZR87_RS04810at 1008.894 kb on - strand, within ABZR87_RS04810at 1008.894 kb on - strand, within ABZR87_RS04810at 1008.970 kb on + strand, within ABZR87_RS04810at 1008.971 kb on - strand, within ABZR87_RS04810at 1008.971 kb on - strand, within ABZR87_RS04810at 1009.195 kb on + strandat 1009.195 kb on + strandat 1009.196 kb on - strandat 1009.196 kb on - strandat 1009.196 kb on - strandat 1009.196 kb on - strandat 1009.213 kb on + strandat 1009.213 kb on + strandat 1009.213 kb on + strandat 1009.213 kb on + strandat 1009.214 kb on - strandat 1009.214 kb on - strandat 1009.214 kb on - strandat 1009.340 kb on - strandat 1009.340 kb on - strandat 1009.366 kb on + strandat 1009.394 kb on + strandat 1009.395 kb on - strandat 1009.623 kb on - strand, within ABZR87_RS04815at 1009.623 kb on - strand, within ABZR87_RS04815at 1009.624 kb on + strand, within ABZR87_RS04815at 1009.625 kb on - strand, within ABZR87_RS04815at 1009.649 kb on + strand, within ABZR87_RS04815at 1009.649 kb on + strand, within ABZR87_RS04815at 1009.649 kb on + strand, within ABZR87_RS04815at 1009.650 kb on - strand, within ABZR87_RS04815at 1009.650 kb on - strand, within ABZR87_RS04815at 1009.650 kb on - strand, within ABZR87_RS04815at 1009.650 kb on - strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.651 kb on + strand, within ABZR87_RS04815at 1009.652 kb on - strand, within ABZR87_RS04815at 1009.652 kb on - strand, within ABZR87_RS04815at 1009.652 kb on - strand, within ABZR87_RS04815at 1009.652 kb on - strand, within ABZR87_RS04815at 1009.652 kb on - strand, within ABZR87_RS04815at 1009.652 kb on - strand, within ABZR87_RS04815at 1009.652 kb on - strand, within ABZR87_RS04815at 1009.653 kb on + strand, within ABZR87_RS04815at 1009.653 kb on + strand, within ABZR87_RS04815at 1009.654 kb on - strand, within ABZR87_RS04815at 1009.654 kb on - strand, within ABZR87_RS04815at 1009.654 kb on - strand, within ABZR87_RS04815at 1009.730 kb on + strand, within ABZR87_RS04815at 1009.730 kb on + strand, within ABZR87_RS04815at 1009.804 kb on + strand, within ABZR87_RS04815at 1009.804 kb on + strand, within ABZR87_RS04815at 1009.804 kb on + strand, within ABZR87_RS04815at 1009.804 kb on + strand, within ABZR87_RS04815at 1009.955 kb on + strand, within ABZR87_RS04815at 1009.955 kb on + strand, within ABZR87_RS04815at 1009.956 kb on - strand, within ABZR87_RS04815at 1009.956 kb on - strand, within ABZR87_RS04815at 1009.976 kb on + strand, within ABZR87_RS04815at 1009.976 kb on + strand, within ABZR87_RS04815at 1009.976 kb on + strand, within ABZR87_RS04815at 1010.080 kb on + strand, within ABZR87_RS04815

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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1,008,462 + +0.1
1,008,462 + +0.8
1,008,462 + -1.5
1,008,503 + -0.1
1,008,504 - +0.1
1,008,504 - -1.0
1,008,504 - +0.1
1,008,562 + -0.3
1,008,562 + -0.9
1,008,563 - -0.3
1,008,563 - +0.7
1,008,563 - +0.3
1,008,658 + -0.0
1,008,715 + ABZR87_RS04810 0.17 -1.1
1,008,715 + ABZR87_RS04810 0.17 +0.2
1,008,715 + ABZR87_RS04810 0.17 -1.6
1,008,715 + ABZR87_RS04810 0.17 +0.3
1,008,715 + ABZR87_RS04810 0.17 -0.1
1,008,716 - ABZR87_RS04810 0.18 -1.5
1,008,716 - ABZR87_RS04810 0.18 -0.4
1,008,716 - ABZR87_RS04810 0.18 +0.1
1,008,716 - ABZR87_RS04810 0.18 -0.1
1,008,716 - ABZR87_RS04810 0.18 -0.0
1,008,716 - ABZR87_RS04810 0.18 +0.8
1,008,716 - ABZR87_RS04810 0.18 -0.9
1,008,716 - ABZR87_RS04810 0.18 -0.3
1,008,716 - ABZR87_RS04810 0.18 -0.3
1,008,717 + ABZR87_RS04810 0.18 +0.8
1,008,717 + ABZR87_RS04810 0.18 +0.1
1,008,717 + ABZR87_RS04810 0.18 +0.2
1,008,717 + ABZR87_RS04810 0.18 +0.5
1,008,717 + ABZR87_RS04810 0.18 +0.9
1,008,717 + ABZR87_RS04810 0.18 +0.5
1,008,718 - ABZR87_RS04810 0.18 +0.2
1,008,889 + ABZR87_RS04810 0.54 +0.1
1,008,889 + ABZR87_RS04810 0.54 -0.7
1,008,889 + ABZR87_RS04810 0.54 -0.4
1,008,889 + ABZR87_RS04810 0.54 +0.2
1,008,889 + ABZR87_RS04810 0.54 +0.8
1,008,889 + ABZR87_RS04810 0.54 -0.7
1,008,889 + ABZR87_RS04810 0.54 -0.3
1,008,889 + ABZR87_RS04810 0.54 -0.2
1,008,889 + ABZR87_RS04810 0.54 +0.4
1,008,890 - ABZR87_RS04810 0.54 -0.3
1,008,890 - ABZR87_RS04810 0.54 -0.0
1,008,890 - ABZR87_RS04810 0.54 -0.0
1,008,890 - ABZR87_RS04810 0.54 +0.1
1,008,890 - ABZR87_RS04810 0.54 +0.9
1,008,890 - ABZR87_RS04810 0.54 +0.5
1,008,890 - ABZR87_RS04810 0.54 -0.3
1,008,890 - ABZR87_RS04810 0.54 -0.6
1,008,890 - ABZR87_RS04810 0.54 +0.1
1,008,894 - ABZR87_RS04810 0.55 +1.3
1,008,894 - ABZR87_RS04810 0.55 -0.5
1,008,894 - ABZR87_RS04810 0.55 +1.7
1,008,894 - ABZR87_RS04810 0.55 -0.7
1,008,970 + ABZR87_RS04810 0.71 -1.1
1,008,971 - ABZR87_RS04810 0.71 -0.0
1,008,971 - ABZR87_RS04810 0.71 -1.1
1,009,195 + -0.2
1,009,195 + +1.1
1,009,196 - -1.7
1,009,196 - -0.3
1,009,196 - -0.9
1,009,196 - +0.3
1,009,213 + +0.7
1,009,213 + +0.9
1,009,213 + -2.4
1,009,213 + -0.0
1,009,214 - -0.4
1,009,214 - +0.2
1,009,214 - +0.8
1,009,340 - +0.9
1,009,340 - -0.7
1,009,366 + +0.2
1,009,394 + -2.8
1,009,395 - +0.2
1,009,623 - ABZR87_RS04815 0.12 +0.5
1,009,623 - ABZR87_RS04815 0.12 -0.5
1,009,624 + ABZR87_RS04815 0.12 +0.0
1,009,625 - ABZR87_RS04815 0.12 -0.2
1,009,649 + ABZR87_RS04815 0.13 +0.1
1,009,649 + ABZR87_RS04815 0.13 -1.5
1,009,649 + ABZR87_RS04815 0.13 -1.2
1,009,650 - ABZR87_RS04815 0.13 -0.5
1,009,650 - ABZR87_RS04815 0.13 +0.1
1,009,650 - ABZR87_RS04815 0.13 +0.6
1,009,650 - ABZR87_RS04815 0.13 -0.9
1,009,651 + ABZR87_RS04815 0.13 -0.0
1,009,651 + ABZR87_RS04815 0.13 +0.6
1,009,651 + ABZR87_RS04815 0.13 -0.5
1,009,651 + ABZR87_RS04815 0.13 -3.1
1,009,651 + ABZR87_RS04815 0.13 +0.7
1,009,651 + ABZR87_RS04815 0.13 +1.7
1,009,651 + ABZR87_RS04815 0.13 -0.4
1,009,651 + ABZR87_RS04815 0.13 -0.5
1,009,651 + ABZR87_RS04815 0.13 -1.5
1,009,651 + ABZR87_RS04815 0.13 -0.3
1,009,651 + ABZR87_RS04815 0.13 -0.7
1,009,651 + ABZR87_RS04815 0.13 -1.1
1,009,651 + ABZR87_RS04815 0.13 +1.5
1,009,651 + ABZR87_RS04815 0.13 +0.3
1,009,652 - ABZR87_RS04815 0.13 -0.1
1,009,652 - ABZR87_RS04815 0.13 -0.2
1,009,652 - ABZR87_RS04815 0.13 +0.1
1,009,652 - ABZR87_RS04815 0.13 +1.2
1,009,652 - ABZR87_RS04815 0.13 -0.2
1,009,652 - ABZR87_RS04815 0.13 -1.3
1,009,652 - ABZR87_RS04815 0.13 -1.2
1,009,653 + ABZR87_RS04815 0.13 +0.2
1,009,653 + ABZR87_RS04815 0.13 -0.4
1,009,654 - ABZR87_RS04815 0.13 +0.3
1,009,654 - ABZR87_RS04815 0.13 -2.2
1,009,654 - ABZR87_RS04815 0.13 +0.7
1,009,730 + ABZR87_RS04815 0.17 +0.8
1,009,730 + ABZR87_RS04815 0.17 +1.0
1,009,804 + ABZR87_RS04815 0.20 +1.4
1,009,804 + ABZR87_RS04815 0.20 +0.3
1,009,804 + ABZR87_RS04815 0.20 +1.5
1,009,804 + ABZR87_RS04815 0.20 +0.9
1,009,955 + ABZR87_RS04815 0.26 +0.3
1,009,955 + ABZR87_RS04815 0.26 +0.9
1,009,956 - ABZR87_RS04815 0.26 -0.2
1,009,956 - ABZR87_RS04815 0.26 +0.1
1,009,976 + ABZR87_RS04815 0.27 -1.0
1,009,976 + ABZR87_RS04815 0.27 -0.0
1,009,976 + ABZR87_RS04815 0.27 +0.6
1,010,080 + ABZR87_RS04815 0.31 -0.4

Or see this region's nucleotide sequence