Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04650

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04645 and ABZR87_RS04650 are separated by 168 nucleotidesABZR87_RS04650 and ABZR87_RS04655 are separated by 114 nucleotides ABZR87_RS04645: ABZR87_RS04645 - MFS transporter, at 970,754 to 972,073 _RS04645 ABZR87_RS04650: ABZR87_RS04650 - LysR family transcriptional regulator, at 972,242 to 973,126 _RS04650 ABZR87_RS04655: ABZR87_RS04655 - N-acetyl-gamma-glutamyl-phosphate reductase, at 973,241 to 974,173 _RS04655 Position (kb) 972 973 974Strain fitness (log2 ratio) -3 -2 -1 0 1at 971.304 kb on + strand, within ABZR87_RS04645at 971.304 kb on + strand, within ABZR87_RS04645at 971.304 kb on + strand, within ABZR87_RS04645at 971.304 kb on + strand, within ABZR87_RS04645at 971.305 kb on - strand, within ABZR87_RS04645at 971.305 kb on - strand, within ABZR87_RS04645at 971.305 kb on - strand, within ABZR87_RS04645at 971.306 kb on - strand, within ABZR87_RS04645at 971.778 kb on + strand, within ABZR87_RS04645at 971.778 kb on + strand, within ABZR87_RS04645at 971.778 kb on + strand, within ABZR87_RS04645at 971.778 kb on + strand, within ABZR87_RS04645at 971.778 kb on + strand, within ABZR87_RS04645at 971.779 kb on - strand, within ABZR87_RS04645at 971.779 kb on - strand, within ABZR87_RS04645at 971.779 kb on - strand, within ABZR87_RS04645at 971.779 kb on - strand, within ABZR87_RS04645at 971.827 kb on - strand, within ABZR87_RS04645at 971.827 kb on - strand, within ABZR87_RS04645at 971.866 kb on + strand, within ABZR87_RS04645at 971.866 kb on + strand, within ABZR87_RS04645at 971.868 kb on + strand, within ABZR87_RS04645at 971.868 kb on + strand, within ABZR87_RS04645at 971.868 kb on + strand, within ABZR87_RS04645at 971.868 kb on + strand, within ABZR87_RS04645at 971.868 kb on + strand, within ABZR87_RS04645at 971.868 kb on + strand, within ABZR87_RS04645at 971.868 kb on + strand, within ABZR87_RS04645at 971.868 kb on + strand, within ABZR87_RS04645at 971.868 kb on + strand, within ABZR87_RS04645at 971.868 kb on + strand, within ABZR87_RS04645at 971.868 kb on + strand, within ABZR87_RS04645at 971.868 kb on + strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.869 kb on - strand, within ABZR87_RS04645at 971.910 kb on + strand, within ABZR87_RS04645at 971.910 kb on + strand, within ABZR87_RS04645at 971.911 kb on - strand, within ABZR87_RS04645at 971.911 kb on - strand, within ABZR87_RS04645at 971.911 kb on - strand, within ABZR87_RS04645at 971.956 kb on + strandat 971.956 kb on + strandat 971.956 kb on + strandat 971.956 kb on + strandat 971.956 kb on + strandat 971.956 kb on + strandat 971.956 kb on + strandat 971.957 kb on - strandat 971.957 kb on - strandat 971.957 kb on - strandat 971.957 kb on - strandat 971.957 kb on - strandat 971.957 kb on - strandat 971.957 kb on - strandat 971.957 kb on - strandat 972.065 kb on + strandat 972.065 kb on + strandat 972.065 kb on + strandat 972.065 kb on + strandat 972.065 kb on + strandat 972.065 kb on + strandat 972.065 kb on + strandat 972.066 kb on - strandat 972.066 kb on - strandat 972.066 kb on - strandat 972.066 kb on - strandat 972.066 kb on - strandat 972.066 kb on - strandat 972.066 kb on - strandat 972.066 kb on - strandat 972.066 kb on - strandat 972.066 kb on - strandat 972.161 kb on - strandat 972.194 kb on + strandat 972.195 kb on - strandat 972.195 kb on - strandat 972.195 kb on - strandat 972.243 kb on + strandat 972.410 kb on - strand, within ABZR87_RS04650at 972.417 kb on + strand, within ABZR87_RS04650at 972.418 kb on - strand, within ABZR87_RS04650at 972.453 kb on + strand, within ABZR87_RS04650at 972.453 kb on + strand, within ABZR87_RS04650at 972.453 kb on + strand, within ABZR87_RS04650at 972.453 kb on + strand, within ABZR87_RS04650at 972.453 kb on + strand, within ABZR87_RS04650at 972.454 kb on - strand, within ABZR87_RS04650at 972.484 kb on - strand, within ABZR87_RS04650at 972.578 kb on - strand, within ABZR87_RS04650at 972.840 kb on - strand, within ABZR87_RS04650at 972.840 kb on - strand, within ABZR87_RS04650at 973.173 kb on - strandat 973.188 kb on + strandat 973.189 kb on - strandat 973.262 kb on - strandat 973.526 kb on + strand, within ABZR87_RS04655at 973.526 kb on + strand, within ABZR87_RS04655at 973.602 kb on - strand, within ABZR87_RS04655at 973.694 kb on + strand, within ABZR87_RS04655at 973.695 kb on - strand, within ABZR87_RS04655at 973.695 kb on - strand, within ABZR87_RS04655at 973.727 kb on + strand, within ABZR87_RS04655at 973.727 kb on + strand, within ABZR87_RS04655at 973.728 kb on - strand, within ABZR87_RS04655at 973.769 kb on + strand, within ABZR87_RS04655at 973.825 kb on + strand, within ABZR87_RS04655at 973.862 kb on + strand, within ABZR87_RS04655at 973.958 kb on + strand, within ABZR87_RS04655at 973.958 kb on + strand, within ABZR87_RS04655at 973.958 kb on + strand, within ABZR87_RS04655at 973.958 kb on + strand, within ABZR87_RS04655

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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971,304 + ABZR87_RS04645 0.42 +0.4
971,304 + ABZR87_RS04645 0.42 +1.1
971,304 + ABZR87_RS04645 0.42 +0.5
971,304 + ABZR87_RS04645 0.42 +0.3
971,305 - ABZR87_RS04645 0.42 +0.1
971,305 - ABZR87_RS04645 0.42 -0.1
971,305 - ABZR87_RS04645 0.42 +1.1
971,306 - ABZR87_RS04645 0.42 -1.1
971,778 + ABZR87_RS04645 0.78 -0.7
971,778 + ABZR87_RS04645 0.78 +0.0
971,778 + ABZR87_RS04645 0.78 +0.5
971,778 + ABZR87_RS04645 0.78 +0.1
971,778 + ABZR87_RS04645 0.78 +0.3
971,779 - ABZR87_RS04645 0.78 +0.5
971,779 - ABZR87_RS04645 0.78 -2.3
971,779 - ABZR87_RS04645 0.78 +0.3
971,779 - ABZR87_RS04645 0.78 +0.0
971,827 - ABZR87_RS04645 0.81 +1.0
971,827 - ABZR87_RS04645 0.81 +0.1
971,866 + ABZR87_RS04645 0.84 -2.6
971,866 + ABZR87_RS04645 0.84 +1.3
971,868 + ABZR87_RS04645 0.84 +0.0
971,868 + ABZR87_RS04645 0.84 -1.0
971,868 + ABZR87_RS04645 0.84 -0.1
971,868 + ABZR87_RS04645 0.84 +1.7
971,868 + ABZR87_RS04645 0.84 -0.1
971,868 + ABZR87_RS04645 0.84 -1.7
971,868 + ABZR87_RS04645 0.84 -0.5
971,868 + ABZR87_RS04645 0.84 +1.1
971,868 + ABZR87_RS04645 0.84 -2.6
971,868 + ABZR87_RS04645 0.84 +0.0
971,868 + ABZR87_RS04645 0.84 +0.3
971,868 + ABZR87_RS04645 0.84 -0.2
971,869 - ABZR87_RS04645 0.84 +0.4
971,869 - ABZR87_RS04645 0.84 +0.6
971,869 - ABZR87_RS04645 0.84 -0.5
971,869 - ABZR87_RS04645 0.84 +0.3
971,869 - ABZR87_RS04645 0.84 -0.1
971,869 - ABZR87_RS04645 0.84 +0.1
971,869 - ABZR87_RS04645 0.84 -0.3
971,869 - ABZR87_RS04645 0.84 +0.2
971,869 - ABZR87_RS04645 0.84 +0.5
971,869 - ABZR87_RS04645 0.84 +0.7
971,869 - ABZR87_RS04645 0.84 +0.0
971,869 - ABZR87_RS04645 0.84 +0.0
971,869 - ABZR87_RS04645 0.84 -1.3
971,869 - ABZR87_RS04645 0.84 -0.1
971,910 + ABZR87_RS04645 0.88 -0.0
971,910 + ABZR87_RS04645 0.88 +0.1
971,911 - ABZR87_RS04645 0.88 -0.8
971,911 - ABZR87_RS04645 0.88 -1.2
971,911 - ABZR87_RS04645 0.88 -0.2
971,956 + -1.0
971,956 + +0.4
971,956 + +1.1
971,956 + +0.5
971,956 + +0.0
971,956 + +1.3
971,956 + +1.0
971,957 - -0.6
971,957 - +0.0
971,957 - -1.4
971,957 - -0.1
971,957 - +0.6
971,957 - -0.3
971,957 - -0.4
971,957 - -1.2
972,065 + -2.2
972,065 + -0.0
972,065 + +0.8
972,065 + -0.5
972,065 + +1.1
972,065 + +0.5
972,065 + +0.2
972,066 - -2.7
972,066 - -1.7
972,066 - +0.2
972,066 - +0.2
972,066 - -0.9
972,066 - -0.2
972,066 - +0.2
972,066 - -0.6
972,066 - -0.2
972,066 - +0.1
972,161 - -2.1
972,194 + +0.0
972,195 - -1.3
972,195 - -1.0
972,195 - +0.7
972,243 + +0.4
972,410 - ABZR87_RS04650 0.19 -1.8
972,417 + ABZR87_RS04650 0.20 -0.0
972,418 - ABZR87_RS04650 0.20 -1.1
972,453 + ABZR87_RS04650 0.24 -0.2
972,453 + ABZR87_RS04650 0.24 -0.5
972,453 + ABZR87_RS04650 0.24 -0.8
972,453 + ABZR87_RS04650 0.24 -2.3
972,453 + ABZR87_RS04650 0.24 -0.0
972,454 - ABZR87_RS04650 0.24 -1.0
972,484 - ABZR87_RS04650 0.27 -0.7
972,578 - ABZR87_RS04650 0.38 -2.0
972,840 - ABZR87_RS04650 0.68 -2.0
972,840 - ABZR87_RS04650 0.68 +0.7
973,173 - +0.1
973,188 + +0.8
973,189 - -0.1
973,262 - +0.1
973,526 + ABZR87_RS04655 0.31 +0.7
973,526 + ABZR87_RS04655 0.31 +0.1
973,602 - ABZR87_RS04655 0.39 -0.9
973,694 + ABZR87_RS04655 0.49 -2.8
973,695 - ABZR87_RS04655 0.49 -1.8
973,695 - ABZR87_RS04655 0.49 -0.7
973,727 + ABZR87_RS04655 0.52 +0.8
973,727 + ABZR87_RS04655 0.52 -1.3
973,728 - ABZR87_RS04655 0.52 -0.9
973,769 + ABZR87_RS04655 0.57 -0.5
973,825 + ABZR87_RS04655 0.63 -1.1
973,862 + ABZR87_RS04655 0.67 -0.4
973,958 + ABZR87_RS04655 0.77 +0.4
973,958 + ABZR87_RS04655 0.77 +0.1
973,958 + ABZR87_RS04655 0.77 -0.9
973,958 + ABZR87_RS04655 0.77 -2.5

Or see this region's nucleotide sequence