Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03270

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03260 and ABZR87_RS03265 are separated by 325 nucleotidesABZR87_RS03265 and ABZR87_RS03270 are separated by 71 nucleotidesABZR87_RS03270 and ABZR87_RS03275 are separated by 6 nucleotides ABZR87_RS03260: ABZR87_RS03260 - histidinol-phosphate transaminase, at 686,895 to 687,962 _RS03260 ABZR87_RS03265: ABZR87_RS03265 - high-potential iron-sulfur protein, at 688,288 to 688,599 _RS03265 ABZR87_RS03270: ABZR87_RS03270 - two-component system response regulator KdpE, at 688,671 to 689,375 _RS03270 ABZR87_RS03275: ABZR87_RS03275 - tripartite tricarboxylate transporter substrate binding protein, at 689,382 to 690,380 _RS03275 Position (kb) 688 689 690Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 687.684 kb on + strand, within ABZR87_RS03260at 687.684 kb on + strand, within ABZR87_RS03260at 687.684 kb on + strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.685 kb on - strand, within ABZR87_RS03260at 687.934 kb on + strandat 687.935 kb on - strandat 687.935 kb on - strandat 687.935 kb on - strandat 687.960 kb on + strandat 687.961 kb on - strandat 687.961 kb on - strandat 687.961 kb on - strandat 687.964 kb on + strandat 687.964 kb on + strandat 687.964 kb on + strandat 687.964 kb on + strandat 687.964 kb on + strandat 687.965 kb on - strandat 687.965 kb on - strandat 687.965 kb on - strandat 688.108 kb on + strandat 688.108 kb on + strandat 688.109 kb on - strandat 688.109 kb on - strandat 688.122 kb on - strandat 688.122 kb on - strandat 688.139 kb on + strandat 688.139 kb on + strandat 688.139 kb on + strandat 688.139 kb on + strandat 688.219 kb on - strandat 688.420 kb on + strand, within ABZR87_RS03265at 688.421 kb on - strand, within ABZR87_RS03265at 688.501 kb on + strand, within ABZR87_RS03265at 688.501 kb on + strand, within ABZR87_RS03265at 688.502 kb on - strand, within ABZR87_RS03265at 688.502 kb on - strand, within ABZR87_RS03265at 688.502 kb on - strand, within ABZR87_RS03265at 688.502 kb on - strand, within ABZR87_RS03265at 688.667 kb on + strandat 688.667 kb on + strandat 688.667 kb on + strandat 688.667 kb on + strandat 688.667 kb on + strandat 688.667 kb on + strandat 688.668 kb on - strandat 688.668 kb on - strandat 688.668 kb on - strandat 688.668 kb on - strandat 688.668 kb on - strandat 688.668 kb on - strandat 688.668 kb on - strandat 688.986 kb on + strand, within ABZR87_RS03270at 688.986 kb on + strand, within ABZR87_RS03270at 688.986 kb on + strand, within ABZR87_RS03270at 688.986 kb on + strand, within ABZR87_RS03270at 688.986 kb on + strand, within ABZR87_RS03270at 688.986 kb on + strand, within ABZR87_RS03270at 688.987 kb on - strand, within ABZR87_RS03270at 688.987 kb on - strand, within ABZR87_RS03270at 688.987 kb on - strand, within ABZR87_RS03270at 688.987 kb on - strand, within ABZR87_RS03270at 689.268 kb on + strand, within ABZR87_RS03270at 689.268 kb on + strand, within ABZR87_RS03270at 689.269 kb on - strand, within ABZR87_RS03270at 689.269 kb on - strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.280 kb on + strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.281 kb on - strand, within ABZR87_RS03270at 689.373 kb on + strandat 689.373 kb on + strandat 689.374 kb on - strandat 689.374 kb on - strandat 689.432 kb on - strandat 689.627 kb on - strand, within ABZR87_RS03275at 689.627 kb on - strand, within ABZR87_RS03275at 689.724 kb on + strand, within ABZR87_RS03275at 689.806 kb on + strand, within ABZR87_RS03275at 689.806 kb on + strand, within ABZR87_RS03275at 689.806 kb on + strand, within ABZR87_RS03275at 689.807 kb on - strand, within ABZR87_RS03275at 689.807 kb on - strand, within ABZR87_RS03275at 689.807 kb on - strand, within ABZR87_RS03275at 689.822 kb on + strand, within ABZR87_RS03275at 689.822 kb on + strand, within ABZR87_RS03275at 689.823 kb on - strand, within ABZR87_RS03275at 689.873 kb on + strand, within ABZR87_RS03275at 689.873 kb on + strand, within ABZR87_RS03275at 689.873 kb on + strand, within ABZR87_RS03275at 689.873 kb on + strand, within ABZR87_RS03275at 689.874 kb on - strand, within ABZR87_RS03275at 689.874 kb on - strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.989 kb on + strand, within ABZR87_RS03275at 689.990 kb on - strand, within ABZR87_RS03275at 689.990 kb on - strand, within ABZR87_RS03275at 689.990 kb on - strand, within ABZR87_RS03275at 689.990 kb on - strand, within ABZR87_RS03275at 689.990 kb on - strand, within ABZR87_RS03275at 689.990 kb on - strand, within ABZR87_RS03275at 689.990 kb on - strand, within ABZR87_RS03275at 689.990 kb on - strand, within ABZR87_RS03275at 689.990 kb on - strand, within ABZR87_RS03275at 689.990 kb on - strand, within ABZR87_RS03275at 690.031 kb on + strand, within ABZR87_RS03275at 690.031 kb on + strand, within ABZR87_RS03275at 690.032 kb on - strand, within ABZR87_RS03275at 690.032 kb on - strand, within ABZR87_RS03275at 690.094 kb on + strand, within ABZR87_RS03275at 690.094 kb on + strand, within ABZR87_RS03275at 690.094 kb on + strand, within ABZR87_RS03275at 690.118 kb on - strand, within ABZR87_RS03275at 690.277 kb on + strand, within ABZR87_RS03275at 690.277 kb on + strand, within ABZR87_RS03275at 690.365 kb on + strandat 690.365 kb on + strandat 690.365 kb on + strandat 690.365 kb on + strandat 690.365 kb on + strandat 690.365 kb on + strandat 690.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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687,684 + ABZR87_RS03260 0.74 +0.7
687,684 + ABZR87_RS03260 0.74 -0.5
687,684 + ABZR87_RS03260 0.74 -0.6
687,685 - ABZR87_RS03260 0.74 -0.5
687,685 - ABZR87_RS03260 0.74 +0.3
687,685 - ABZR87_RS03260 0.74 +0.2
687,685 - ABZR87_RS03260 0.74 +0.2
687,685 - ABZR87_RS03260 0.74 +0.3
687,685 - ABZR87_RS03260 0.74 +0.1
687,685 - ABZR87_RS03260 0.74 +0.7
687,685 - ABZR87_RS03260 0.74 +0.5
687,685 - ABZR87_RS03260 0.74 +0.7
687,934 + +0.6
687,935 - -0.0
687,935 - -0.5
687,935 - +0.8
687,960 + -0.0
687,961 - -0.9
687,961 - +0.9
687,961 - +0.7
687,964 + -0.3
687,964 + +0.1
687,964 + +2.3
687,964 + -0.6
687,964 + -0.6
687,965 - +0.3
687,965 - +0.8
687,965 - +0.5
688,108 + +0.7
688,108 + +0.7
688,109 - +0.4
688,109 - -1.1
688,122 - -2.1
688,122 - -0.2
688,139 + +0.4
688,139 + +0.1
688,139 + +0.6
688,139 + -0.3
688,219 - -0.2
688,420 + ABZR87_RS03265 0.42 -2.5
688,421 - ABZR87_RS03265 0.43 -1.5
688,501 + ABZR87_RS03265 0.68 -1.6
688,501 + ABZR87_RS03265 0.68 -3.0
688,502 - ABZR87_RS03265 0.69 -1.7
688,502 - ABZR87_RS03265 0.69 -0.6
688,502 - ABZR87_RS03265 0.69 +0.7
688,502 - ABZR87_RS03265 0.69 -0.7
688,667 + +0.4
688,667 + +1.2
688,667 + +0.5
688,667 + +0.2
688,667 + -2.3
688,667 + +0.9
688,668 - +0.1
688,668 - +0.4
688,668 - -1.1
688,668 - +0.0
688,668 - -0.2
688,668 - -0.4
688,668 - -0.2
688,986 + ABZR87_RS03270 0.45 +1.2
688,986 + ABZR87_RS03270 0.45 +0.2
688,986 + ABZR87_RS03270 0.45 +0.9
688,986 + ABZR87_RS03270 0.45 +1.0
688,986 + ABZR87_RS03270 0.45 -0.8
688,986 + ABZR87_RS03270 0.45 +0.1
688,987 - ABZR87_RS03270 0.45 +1.1
688,987 - ABZR87_RS03270 0.45 +0.3
688,987 - ABZR87_RS03270 0.45 -0.8
688,987 - ABZR87_RS03270 0.45 -0.8
689,268 + ABZR87_RS03270 0.85 +0.8
689,268 + ABZR87_RS03270 0.85 +0.4
689,269 - ABZR87_RS03270 0.85 +0.2
689,269 - ABZR87_RS03270 0.85 -0.2
689,280 + ABZR87_RS03270 0.86 +0.6
689,280 + ABZR87_RS03270 0.86 +1.4
689,280 + ABZR87_RS03270 0.86 -0.3
689,280 + ABZR87_RS03270 0.86 +1.7
689,280 + ABZR87_RS03270 0.86 -1.3
689,280 + ABZR87_RS03270 0.86 -2.0
689,280 + ABZR87_RS03270 0.86 -0.6
689,280 + ABZR87_RS03270 0.86 +0.1
689,280 + ABZR87_RS03270 0.86 +0.7
689,280 + ABZR87_RS03270 0.86 +0.3
689,281 - ABZR87_RS03270 0.87 +2.3
689,281 - ABZR87_RS03270 0.87 +1.7
689,281 - ABZR87_RS03270 0.87 +1.4
689,281 - ABZR87_RS03270 0.87 -0.5
689,281 - ABZR87_RS03270 0.87 +0.3
689,281 - ABZR87_RS03270 0.87 -1.4
689,281 - ABZR87_RS03270 0.87 -0.4
689,281 - ABZR87_RS03270 0.87 +1.2
689,281 - ABZR87_RS03270 0.87 -2.0
689,281 - ABZR87_RS03270 0.87 +0.1
689,281 - ABZR87_RS03270 0.87 +1.1
689,281 - ABZR87_RS03270 0.87 -0.5
689,281 - ABZR87_RS03270 0.87 +1.4
689,373 + +1.3
689,373 + +0.7
689,374 - +1.2
689,374 - +0.6
689,432 - +0.1
689,627 - ABZR87_RS03275 0.25 +0.6
689,627 - ABZR87_RS03275 0.25 +0.6
689,724 + ABZR87_RS03275 0.34 +1.5
689,806 + ABZR87_RS03275 0.42 +1.1
689,806 + ABZR87_RS03275 0.42 +0.4
689,806 + ABZR87_RS03275 0.42 +1.3
689,807 - ABZR87_RS03275 0.43 +0.9
689,807 - ABZR87_RS03275 0.43 +1.2
689,807 - ABZR87_RS03275 0.43 +1.2
689,822 + ABZR87_RS03275 0.44 +0.7
689,822 + ABZR87_RS03275 0.44 +1.7
689,823 - ABZR87_RS03275 0.44 +1.1
689,873 + ABZR87_RS03275 0.49 +1.1
689,873 + ABZR87_RS03275 0.49 -0.2
689,873 + ABZR87_RS03275 0.49 +1.3
689,873 + ABZR87_RS03275 0.49 +0.2
689,874 - ABZR87_RS03275 0.49 +2.2
689,874 - ABZR87_RS03275 0.49 -0.4
689,989 + ABZR87_RS03275 0.61 +0.9
689,989 + ABZR87_RS03275 0.61 +0.4
689,989 + ABZR87_RS03275 0.61 +1.0
689,989 + ABZR87_RS03275 0.61 +1.4
689,989 + ABZR87_RS03275 0.61 +0.8
689,989 + ABZR87_RS03275 0.61 +0.2
689,989 + ABZR87_RS03275 0.61 +1.8
689,989 + ABZR87_RS03275 0.61 +1.8
689,989 + ABZR87_RS03275 0.61 +1.6
689,989 + ABZR87_RS03275 0.61 -0.3
689,989 + ABZR87_RS03275 0.61 +0.6
689,989 + ABZR87_RS03275 0.61 +1.8
689,989 + ABZR87_RS03275 0.61 +0.5
689,989 + ABZR87_RS03275 0.61 +0.0
689,990 - ABZR87_RS03275 0.61 +0.7
689,990 - ABZR87_RS03275 0.61 +0.2
689,990 - ABZR87_RS03275 0.61 +0.4
689,990 - ABZR87_RS03275 0.61 +1.4
689,990 - ABZR87_RS03275 0.61 +0.9
689,990 - ABZR87_RS03275 0.61 +0.1
689,990 - ABZR87_RS03275 0.61 -0.3
689,990 - ABZR87_RS03275 0.61 +0.5
689,990 - ABZR87_RS03275 0.61 +0.7
689,990 - ABZR87_RS03275 0.61 +0.7
690,031 + ABZR87_RS03275 0.65 +1.4
690,031 + ABZR87_RS03275 0.65 +0.7
690,032 - ABZR87_RS03275 0.65 +1.0
690,032 - ABZR87_RS03275 0.65 +0.5
690,094 + ABZR87_RS03275 0.71 +0.8
690,094 + ABZR87_RS03275 0.71 +2.3
690,094 + ABZR87_RS03275 0.71 +1.3
690,118 - ABZR87_RS03275 0.74 +0.4
690,277 + ABZR87_RS03275 0.90 +0.5
690,277 + ABZR87_RS03275 0.90 +1.0
690,365 + +0.9
690,365 + +0.5
690,365 + +1.2
690,365 + +3.7
690,365 + +2.0
690,365 + +1.1
690,366 - +1.3

Or see this region's nucleotide sequence