Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02550

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02540 and ABZR87_RS02545 are separated by 3 nucleotidesABZR87_RS02545 and ABZR87_RS02550 are separated by 37 nucleotidesABZR87_RS02550 and ABZR87_RS02555 overlap by 4 nucleotides ABZR87_RS02540: ABZR87_RS02540 - VacJ family lipoprotein, at 536,761 to 537,564 _RS02540 ABZR87_RS02545: ABZR87_RS02545 - outer membrane lipid asymmetry maintenance protein MlaD, at 537,568 to 538,089 _RS02545 ABZR87_RS02550: ABZR87_RS02550 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 538,127 to 538,894 _RS02550 ABZR87_RS02555: ABZR87_RS02555 - ABC transporter ATP-binding protein, at 538,891 to 539,724 _RS02555 Position (kb) 538 539Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 537.302 kb on + strand, within ABZR87_RS02540at 537.303 kb on - strand, within ABZR87_RS02540at 537.371 kb on + strand, within ABZR87_RS02540at 537.371 kb on + strand, within ABZR87_RS02540at 537.371 kb on + strand, within ABZR87_RS02540at 537.371 kb on + strand, within ABZR87_RS02540at 537.371 kb on + strand, within ABZR87_RS02540at 537.372 kb on - strand, within ABZR87_RS02540at 537.372 kb on - strand, within ABZR87_RS02540at 537.372 kb on - strand, within ABZR87_RS02540at 537.372 kb on - strand, within ABZR87_RS02540at 537.372 kb on - strand, within ABZR87_RS02540at 537.372 kb on - strand, within ABZR87_RS02540at 537.540 kb on + strandat 537.540 kb on + strandat 537.541 kb on - strandat 537.541 kb on - strandat 537.546 kb on + strandat 537.546 kb on + strandat 537.546 kb on + strandat 537.547 kb on - strandat 537.570 kb on - strandat 537.570 kb on - strandat 537.653 kb on + strand, within ABZR87_RS02545at 537.653 kb on + strand, within ABZR87_RS02545at 537.653 kb on + strand, within ABZR87_RS02545at 537.653 kb on + strand, within ABZR87_RS02545at 537.654 kb on - strand, within ABZR87_RS02545at 537.654 kb on - strand, within ABZR87_RS02545at 537.654 kb on - strand, within ABZR87_RS02545at 537.761 kb on + strand, within ABZR87_RS02545at 537.761 kb on + strand, within ABZR87_RS02545at 537.761 kb on + strand, within ABZR87_RS02545at 537.761 kb on + strand, within ABZR87_RS02545at 537.761 kb on + strand, within ABZR87_RS02545at 537.762 kb on - strand, within ABZR87_RS02545at 537.762 kb on - strand, within ABZR87_RS02545at 537.762 kb on - strand, within ABZR87_RS02545at 537.762 kb on - strand, within ABZR87_RS02545at 537.822 kb on - strand, within ABZR87_RS02545at 537.822 kb on - strand, within ABZR87_RS02545at 537.857 kb on + strand, within ABZR87_RS02545at 537.857 kb on + strand, within ABZR87_RS02545at 537.857 kb on + strand, within ABZR87_RS02545at 537.858 kb on - strand, within ABZR87_RS02545at 537.858 kb on - strand, within ABZR87_RS02545at 537.858 kb on - strand, within ABZR87_RS02545at 537.971 kb on + strand, within ABZR87_RS02545at 537.972 kb on - strand, within ABZR87_RS02545at 537.999 kb on + strand, within ABZR87_RS02545at 537.999 kb on + strand, within ABZR87_RS02545at 537.999 kb on + strand, within ABZR87_RS02545at 538.000 kb on - strand, within ABZR87_RS02545at 538.000 kb on - strand, within ABZR87_RS02545at 538.000 kb on - strand, within ABZR87_RS02545at 538.000 kb on - strand, within ABZR87_RS02545at 538.000 kb on - strand, within ABZR87_RS02545at 538.000 kb on - strand, within ABZR87_RS02545at 538.000 kb on - strand, within ABZR87_RS02545at 538.000 kb on - strand, within ABZR87_RS02545at 538.000 kb on - strand, within ABZR87_RS02545at 538.000 kb on - strand, within ABZR87_RS02545at 538.042 kb on + strandat 538.043 kb on - strandat 538.083 kb on + strandat 538.084 kb on - strandat 538.084 kb on - strandat 538.084 kb on - strandat 538.242 kb on + strand, within ABZR87_RS02550at 538.242 kb on + strand, within ABZR87_RS02550at 538.243 kb on - strand, within ABZR87_RS02550at 538.251 kb on + strand, within ABZR87_RS02550at 538.251 kb on + strand, within ABZR87_RS02550at 538.251 kb on + strand, within ABZR87_RS02550at 538.252 kb on - strand, within ABZR87_RS02550at 538.252 kb on - strand, within ABZR87_RS02550at 538.252 kb on - strand, within ABZR87_RS02550at 538.395 kb on + strand, within ABZR87_RS02550at 538.395 kb on + strand, within ABZR87_RS02550at 538.408 kb on + strand, within ABZR87_RS02550at 538.666 kb on - strand, within ABZR87_RS02550at 538.683 kb on + strand, within ABZR87_RS02550at 538.683 kb on + strand, within ABZR87_RS02550at 538.683 kb on + strand, within ABZR87_RS02550at 538.684 kb on - strand, within ABZR87_RS02550at 538.949 kb on + strandat 538.950 kb on - strandat 538.950 kb on - strandat 539.069 kb on + strand, within ABZR87_RS02555at 539.069 kb on + strand, within ABZR87_RS02555at 539.070 kb on - strand, within ABZR87_RS02555at 539.070 kb on - strand, within ABZR87_RS02555at 539.070 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.076 kb on - strand, within ABZR87_RS02555at 539.101 kb on + strand, within ABZR87_RS02555at 539.101 kb on + strand, within ABZR87_RS02555at 539.101 kb on + strand, within ABZR87_RS02555at 539.102 kb on - strand, within ABZR87_RS02555at 539.102 kb on - strand, within ABZR87_RS02555at 539.102 kb on - strand, within ABZR87_RS02555at 539.213 kb on + strand, within ABZR87_RS02555at 539.213 kb on + strand, within ABZR87_RS02555at 539.213 kb on + strand, within ABZR87_RS02555at 539.213 kb on + strand, within ABZR87_RS02555at 539.214 kb on - strand, within ABZR87_RS02555at 539.376 kb on + strand, within ABZR87_RS02555at 539.376 kb on + strand, within ABZR87_RS02555at 539.377 kb on - strand, within ABZR87_RS02555at 539.474 kb on + strand, within ABZR87_RS02555at 539.474 kb on + strand, within ABZR87_RS02555at 539.475 kb on - strand, within ABZR87_RS02555at 539.475 kb on - strand, within ABZR87_RS02555at 539.475 kb on - strand, within ABZR87_RS02555at 539.475 kb on - strand, within ABZR87_RS02555at 539.475 kb on - strand, within ABZR87_RS02555at 539.475 kb on - strand, within ABZR87_RS02555at 539.670 kb on - strandat 539.764 kb on - strandat 539.821 kb on + strandat 539.821 kb on + strandat 539.821 kb on + strandat 539.821 kb on + strandat 539.821 kb on + strandat 539.822 kb on - strandat 539.822 kb on - strandat 539.822 kb on - strandat 539.822 kb on - strandat 539.822 kb on - strandat 539.823 kb on + strandat 539.823 kb on + strandat 539.823 kb on + strandat 539.823 kb on + strandat 539.823 kb on + strandat 539.823 kb on + strandat 539.823 kb on + strandat 539.824 kb on - strandat 539.862 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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537,302 + ABZR87_RS02540 0.67 -2.2
537,303 - ABZR87_RS02540 0.67 -2.5
537,371 + ABZR87_RS02540 0.76 -1.7
537,371 + ABZR87_RS02540 0.76 -1.9
537,371 + ABZR87_RS02540 0.76 -2.4
537,371 + ABZR87_RS02540 0.76 -2.2
537,371 + ABZR87_RS02540 0.76 -0.9
537,372 - ABZR87_RS02540 0.76 -1.1
537,372 - ABZR87_RS02540 0.76 -4.1
537,372 - ABZR87_RS02540 0.76 -1.3
537,372 - ABZR87_RS02540 0.76 -3.1
537,372 - ABZR87_RS02540 0.76 -1.9
537,372 - ABZR87_RS02540 0.76 -4.0
537,540 + -2.4
537,540 + -2.0
537,541 - -0.1
537,541 - -2.8
537,546 + -1.3
537,546 + -2.5
537,546 + -1.1
537,547 - -3.6
537,570 - +0.8
537,570 - +1.6
537,653 + ABZR87_RS02545 0.16 -1.4
537,653 + ABZR87_RS02545 0.16 -3.6
537,653 + ABZR87_RS02545 0.16 -1.7
537,653 + ABZR87_RS02545 0.16 +1.7
537,654 - ABZR87_RS02545 0.16 -2.5
537,654 - ABZR87_RS02545 0.16 -0.6
537,654 - ABZR87_RS02545 0.16 -1.1
537,761 + ABZR87_RS02545 0.37 -3.1
537,761 + ABZR87_RS02545 0.37 -4.1
537,761 + ABZR87_RS02545 0.37 -2.3
537,761 + ABZR87_RS02545 0.37 -2.6
537,761 + ABZR87_RS02545 0.37 -1.6
537,762 - ABZR87_RS02545 0.37 -2.3
537,762 - ABZR87_RS02545 0.37 -2.6
537,762 - ABZR87_RS02545 0.37 -1.7
537,762 - ABZR87_RS02545 0.37 -2.2
537,822 - ABZR87_RS02545 0.49 -3.1
537,822 - ABZR87_RS02545 0.49 -2.4
537,857 + ABZR87_RS02545 0.55 -2.6
537,857 + ABZR87_RS02545 0.55 -2.0
537,857 + ABZR87_RS02545 0.55 -2.9
537,858 - ABZR87_RS02545 0.56 -1.9
537,858 - ABZR87_RS02545 0.56 -2.8
537,858 - ABZR87_RS02545 0.56 -3.0
537,971 + ABZR87_RS02545 0.77 -1.6
537,972 - ABZR87_RS02545 0.77 -2.5
537,999 + ABZR87_RS02545 0.83 -2.7
537,999 + ABZR87_RS02545 0.83 -0.9
537,999 + ABZR87_RS02545 0.83 -2.0
538,000 - ABZR87_RS02545 0.83 -2.2
538,000 - ABZR87_RS02545 0.83 -1.6
538,000 - ABZR87_RS02545 0.83 -2.9
538,000 - ABZR87_RS02545 0.83 -3.8
538,000 - ABZR87_RS02545 0.83 -1.2
538,000 - ABZR87_RS02545 0.83 -1.9
538,000 - ABZR87_RS02545 0.83 -1.9
538,000 - ABZR87_RS02545 0.83 -2.7
538,000 - ABZR87_RS02545 0.83 -2.7
538,000 - ABZR87_RS02545 0.83 -3.1
538,042 + -1.4
538,043 - -1.6
538,083 + -2.3
538,084 - -4.7
538,084 - -2.1
538,084 - -2.3
538,242 + ABZR87_RS02550 0.15 -0.1
538,242 + ABZR87_RS02550 0.15 -1.1
538,243 - ABZR87_RS02550 0.15 -2.0
538,251 + ABZR87_RS02550 0.16 -0.3
538,251 + ABZR87_RS02550 0.16 -1.8
538,251 + ABZR87_RS02550 0.16 -2.1
538,252 - ABZR87_RS02550 0.16 -1.9
538,252 - ABZR87_RS02550 0.16 -2.4
538,252 - ABZR87_RS02550 0.16 -2.4
538,395 + ABZR87_RS02550 0.35 -3.5
538,395 + ABZR87_RS02550 0.35 -3.4
538,408 + ABZR87_RS02550 0.37 -2.1
538,666 - ABZR87_RS02550 0.70 -1.3
538,683 + ABZR87_RS02550 0.72 -2.6
538,683 + ABZR87_RS02550 0.72 -0.8
538,683 + ABZR87_RS02550 0.72 -3.6
538,684 - ABZR87_RS02550 0.73 -1.4
538,949 + -2.8
538,950 - -1.1
538,950 - -2.1
539,069 + ABZR87_RS02555 0.21 -2.9
539,069 + ABZR87_RS02555 0.21 -2.9
539,070 - ABZR87_RS02555 0.21 -2.9
539,070 - ABZR87_RS02555 0.21 -0.9
539,070 - ABZR87_RS02555 0.21 -1.8
539,076 - ABZR87_RS02555 0.22 -2.4
539,076 - ABZR87_RS02555 0.22 -1.4
539,076 - ABZR87_RS02555 0.22 -1.3
539,076 - ABZR87_RS02555 0.22 -2.4
539,076 - ABZR87_RS02555 0.22 -2.6
539,076 - ABZR87_RS02555 0.22 -2.7
539,076 - ABZR87_RS02555 0.22 -3.4
539,076 - ABZR87_RS02555 0.22 -3.4
539,101 + ABZR87_RS02555 0.25 -0.6
539,101 + ABZR87_RS02555 0.25 -3.7
539,101 + ABZR87_RS02555 0.25 -3.0
539,102 - ABZR87_RS02555 0.25 -2.4
539,102 - ABZR87_RS02555 0.25 -3.0
539,102 - ABZR87_RS02555 0.25 -1.7
539,213 + ABZR87_RS02555 0.39 -2.2
539,213 + ABZR87_RS02555 0.39 -2.2
539,213 + ABZR87_RS02555 0.39 -1.4
539,213 + ABZR87_RS02555 0.39 -2.1
539,214 - ABZR87_RS02555 0.39 -1.1
539,376 + ABZR87_RS02555 0.58 -1.5
539,376 + ABZR87_RS02555 0.58 -0.9
539,377 - ABZR87_RS02555 0.58 -1.5
539,474 + ABZR87_RS02555 0.70 -0.9
539,474 + ABZR87_RS02555 0.70 -2.0
539,475 - ABZR87_RS02555 0.70 -3.4
539,475 - ABZR87_RS02555 0.70 -2.0
539,475 - ABZR87_RS02555 0.70 -0.9
539,475 - ABZR87_RS02555 0.70 -2.0
539,475 - ABZR87_RS02555 0.70 -2.6
539,475 - ABZR87_RS02555 0.70 -3.0
539,670 - -2.5
539,764 - +0.4
539,821 + -1.5
539,821 + -2.2
539,821 + +0.1
539,821 + -0.3
539,821 + -1.3
539,822 - +1.1
539,822 - +0.6
539,822 - +1.4
539,822 - +0.4
539,822 - +1.6
539,823 + +2.5
539,823 + +1.0
539,823 + -0.1
539,823 + +1.8
539,823 + +2.0
539,823 + +1.6
539,823 + +0.7
539,824 - +1.3
539,862 + -1.7

Or see this region's nucleotide sequence