Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02505

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02500 and ABZR87_RS02505 overlap by 4 nucleotidesABZR87_RS02505 and ABZR87_RS02510 are separated by 19 nucleotides ABZR87_RS02500: ABZR87_RS02500 - histidinol dehydrogenase, at 529,891 to 531,219 _RS02500 ABZR87_RS02505: ABZR87_RS02505 - ATP phosphoribosyltransferase, at 531,216 to 531,905 _RS02505 ABZR87_RS02510: ABZR87_RS02510 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 531,925 to 533,190 _RS02510 Position (kb) 531 532Strain fitness (log2 ratio) -3 -2 -1 0 1at 531.517 kb on + strand, within ABZR87_RS02505at 531.566 kb on - strand, within ABZR87_RS02505at 531.921 kb on + strandat 531.922 kb on - strandat 531.922 kb on - strandat 531.922 kb on - strandat 531.926 kb on + strandat 531.926 kb on + strandat 531.927 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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531,517 + ABZR87_RS02505 0.44 -1.3
531,566 - ABZR87_RS02505 0.51 -0.6
531,921 + -3.0
531,922 - -0.0
531,922 - +1.5
531,922 - -0.7
531,926 + -1.7
531,926 + -2.0
531,927 - -0.6

Or see this region's nucleotide sequence