Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01980 and ABZR87_RS01985 are separated by 9 nucleotides ABZR87_RS01985 and ABZR87_RS01990 are separated by 380 nucleotides ABZR87_RS01990 and ABZR87_RS01995 are separated by 380 nucleotides
ABZR87_RS01980: ABZR87_RS01980 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 422,347 to 423,306
_RS01980
ABZR87_RS01985: ABZR87_RS01985 - division/cell wall cluster transcriptional repressor MraZ, at 423,316 to 423,744
_RS01985
ABZR87_RS01990: ABZR87_RS01990 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase, at 424,125 to 424,778
_RS01990
ABZR87_RS01995: ABZR87_RS01995 - porin, at 425,159 to 426,337
_RS01995
Position (kb) 424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 423.216 kb on - strand at 423.216 kb on - strand at 423.216 kb on - strand at 423.384 kb on - strand, within ABZR87_RS01985 at 423.384 kb on - strand, within ABZR87_RS01985 at 423.819 kb on - strand at 423.859 kb on - strand at 423.932 kb on + strand at 423.932 kb on + strand at 423.986 kb on - strand at 423.986 kb on - strand at 423.986 kb on - strand at 424.000 kb on - strand at 424.000 kb on - strand at 424.000 kb on - strand at 424.000 kb on - strand at 424.135 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.880 kb on + strand at 424.919 kb on + strand at 424.920 kb on - strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.061 kb on + strand at 425.061 kb on + strand at 425.061 kb on + strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.135 kb on - strand at 425.135 kb on - strand at 425.135 kb on - strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.238 kb on - strand at 425.238 kb on - strand at 425.238 kb on - strand at 425.238 kb on - strand at 425.264 kb on + strand at 425.264 kb on + strand at 425.264 kb on + strand at 425.264 kb on + strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.308 kb on - strand, within ABZR87_RS01995 at 425.392 kb on - strand, within ABZR87_RS01995 at 425.433 kb on - strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.582 kb on + strand, within ABZR87_RS01995 at 425.594 kb on + strand, within ABZR87_RS01995 at 425.594 kb on + strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.652 kb on - strand, within ABZR87_RS01995 at 425.652 kb on - strand, within ABZR87_RS01995 at 425.753 kb on + strand, within ABZR87_RS01995 at 425.753 kb on + strand, within ABZR87_RS01995 at 425.754 kb on - strand, within ABZR87_RS01995 at 425.754 kb on - strand, within ABZR87_RS01995
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 423,216 - -1.5 423,216 - -1.7 423,216 - +0.7 423,384 - ABZR87_RS01985 0.16 -0.6 423,384 - ABZR87_RS01985 0.16 -0.3 423,819 - -3.0 423,859 - -3.0 423,932 + -0.2 423,932 + -0.7 423,986 - -0.1 423,986 - -2.4 423,986 - -1.7 424,000 - -0.7 424,000 - -0.3 424,000 - -3.3 424,000 - -0.8 424,135 + +0.7 424,778 + -0.1 424,778 + +0.6 424,778 + -1.3 424,778 + +0.3 424,778 + +0.2 424,778 + -1.1 424,778 + -0.4 424,778 + -0.6 424,779 - -0.4 424,779 - +0.6 424,779 - -0.3 424,779 - -0.6 424,779 - +1.1 424,779 - +0.7 424,779 - -0.6 424,779 - -0.9 424,779 - +0.7 424,779 - +1.7 424,779 - -0.4 424,779 - -1.3 424,779 - +0.9 424,782 + +0.4 424,782 + -0.2 424,782 + -0.9 424,782 + -0.2 424,782 + -0.4 424,782 + -1.3 424,782 + -0.2 424,782 + -1.6 424,782 + -0.3 424,783 - -0.5 424,783 - -0.2 424,783 - +0.8 424,783 - +0.8 424,783 - -0.5 424,783 - +0.0 424,783 - -0.3 424,783 - -0.2 424,783 - +0.1 424,824 + -2.1 424,824 + -2.1 424,824 + -0.8 424,824 + -0.4 424,824 + -0.1 424,825 - +0.0 424,825 - -1.6 424,825 - +0.4 424,825 - -0.3 424,825 - +1.2 424,825 - +0.1 424,880 + +0.7 424,919 + +0.8 424,920 - +1.3 425,056 + -0.3 425,056 + +0.0 425,056 + +0.2 425,056 + -0.6 425,057 - -0.7 425,057 - -0.6 425,057 - -1.2 425,057 - -0.4 425,057 - +0.6 425,057 - +0.1 425,057 - -2.2 425,057 - -0.5 425,057 - -0.4 425,057 - +0.6 425,061 + -1.9 425,061 + -0.7 425,061 + +0.4 425,062 - -0.6 425,062 - -0.5 425,062 - -0.4 425,062 - -0.2 425,062 - -0.4 425,062 - -0.1 425,062 - -0.5 425,062 - +0.2 425,062 - -0.4 425,062 - +0.4 425,134 + -0.4 425,134 + -0.8 425,134 + -1.4 425,134 + -1.1 425,134 + -1.9 425,135 - +2.1 425,135 - -0.4 425,135 - -0.4 425,138 + -0.1 425,138 + -0.1 425,138 + +0.2 425,138 + -0.5 425,139 - -0.0 425,139 - +0.3 425,139 - +1.7 425,139 - +0.5 425,139 - +0.4 425,139 - +1.3 425,237 + -0.9 425,237 + -1.1 425,237 + -1.3 425,237 + -2.1 425,238 - -0.5 425,238 - +1.0 425,238 - +0.5 425,238 - +0.4 425,264 + -0.0 425,264 + +0.2 425,264 + -0.4 425,264 + -1.3 425,265 - -1.4 425,265 - -0.6 425,265 - +1.2 425,265 - -1.4 425,265 - +0.6 425,265 - -1.0 425,308 - ABZR87_RS01995 0.13 +0.1 425,392 - ABZR87_RS01995 0.20 -1.6 425,433 - ABZR87_RS01995 0.23 +0.4 425,537 + ABZR87_RS01995 0.32 -0.4 425,537 + ABZR87_RS01995 0.32 -0.0 425,537 + ABZR87_RS01995 0.32 -0.9 425,537 + ABZR87_RS01995 0.32 +0.6 425,537 + ABZR87_RS01995 0.32 -1.0 425,538 - ABZR87_RS01995 0.32 +0.1 425,538 - ABZR87_RS01995 0.32 +0.2 425,538 - ABZR87_RS01995 0.32 +0.3 425,538 - ABZR87_RS01995 0.32 -0.8 425,538 - ABZR87_RS01995 0.32 -0.6 425,538 - ABZR87_RS01995 0.32 +0.2 425,582 + ABZR87_RS01995 0.36 -0.7 425,594 + ABZR87_RS01995 0.37 +0.6 425,594 + ABZR87_RS01995 0.37 +1.7 425,595 - ABZR87_RS01995 0.37 +0.8 425,595 - ABZR87_RS01995 0.37 -2.1 425,595 - ABZR87_RS01995 0.37 +1.3 425,595 - ABZR87_RS01995 0.37 -1.0 425,651 + ABZR87_RS01995 0.42 +0.2 425,651 + ABZR87_RS01995 0.42 +1.0 425,651 + ABZR87_RS01995 0.42 +0.5 425,651 + ABZR87_RS01995 0.42 +0.0 425,651 + ABZR87_RS01995 0.42 +1.1 425,652 - ABZR87_RS01995 0.42 +0.1 425,652 - ABZR87_RS01995 0.42 -0.7 425,753 + ABZR87_RS01995 0.50 +0.7 425,753 + ABZR87_RS01995 0.50 -0.3 425,754 - ABZR87_RS01995 0.50 +0.7 425,754 - ABZR87_RS01995 0.50 +0.1
Or see this region's nucleotide sequence