Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00925 and ABZR87_RS00930 are separated by 51 nucleotides ABZR87_RS00930 and ABZR87_RS00935 are separated by 11 nucleotides ABZR87_RS00935 and ABZR87_RS00940 overlap by 4 nucleotides ABZR87_RS00940 and ABZR87_RS00945 are separated by 29 nucleotides
ABZR87_RS00925: ABZR87_RS00925 - DnaA regulatory inactivator Hda, at 184,455 to 185,156
_RS00925
ABZR87_RS00930: ABZR87_RS00930 - HAD family phosphatase, at 185,208 to 185,882
_RS00930
ABZR87_RS00935: ABZR87_RS00935 - polynucleotide adenylyltransferase PcnB, at 185,894 to 187,456
_RS00935
ABZR87_RS00940: ABZR87_RS00940 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 187,453 to 187,968
_RS00940
ABZR87_RS00945: ABZR87_RS00945 - deoxynucleoside kinase, at 187,998 to 188,642
_RS00945
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 185.179 kb on + strand at 185.179 kb on + strand at 185.179 kb on + strand at 185.180 kb on - strand at 185.180 kb on - strand at 185.180 kb on - strand at 185.183 kb on + strand at 185.183 kb on + strand at 185.184 kb on - strand at 185.500 kb on - strand, within ABZR87_RS00930 at 185.880 kb on + strand at 185.881 kb on - strand at 185.881 kb on - strand at 185.881 kb on - strand at 185.881 kb on - strand at 186.146 kb on + strand, within ABZR87_RS00935 at 186.308 kb on + strand, within ABZR87_RS00935 at 186.309 kb on - strand, within ABZR87_RS00935 at 186.527 kb on + strand, within ABZR87_RS00935 at 186.527 kb on + strand, within ABZR87_RS00935 at 186.528 kb on - strand, within ABZR87_RS00935 at 186.528 kb on - strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.560 kb on + strand, within ABZR87_RS00935 at 186.560 kb on + strand, within ABZR87_RS00935 at 186.560 kb on + strand, within ABZR87_RS00935 at 186.561 kb on - strand, within ABZR87_RS00935 at 187.048 kb on + strand, within ABZR87_RS00935 at 187.049 kb on - strand, within ABZR87_RS00935 at 187.049 kb on - strand, within ABZR87_RS00935 at 187.211 kb on + strand, within ABZR87_RS00935 at 187.211 kb on + strand, within ABZR87_RS00935 at 187.211 kb on + strand, within ABZR87_RS00935 at 187.212 kb on - strand, within ABZR87_RS00935 at 187.468 kb on + strand at 188.142 kb on + strand, within ABZR87_RS00945 at 188.142 kb on + strand, within ABZR87_RS00945 at 188.143 kb on - strand, within ABZR87_RS00945 at 188.143 kb on - strand, within ABZR87_RS00945 at 188.160 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.323 kb on - strand, within ABZR87_RS00945 at 188.323 kb on - strand, within ABZR87_RS00945 at 188.436 kb on + strand, within ABZR87_RS00945 at 188.436 kb on + strand, within ABZR87_RS00945 at 188.436 kb on + strand, within ABZR87_RS00945
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 185,179 + +1.4 185,179 + -0.1 185,179 + +0.7 185,180 - -0.1 185,180 - -0.4 185,180 - -1.1 185,183 + +1.9 185,183 + +1.0 185,184 - +0.3 185,500 - ABZR87_RS00930 0.43 -0.9 185,880 + -1.1 185,881 - -1.5 185,881 - -1.1 185,881 - -2.0 185,881 - -1.0 186,146 + ABZR87_RS00935 0.16 -2.5 186,308 + ABZR87_RS00935 0.26 -2.0 186,309 - ABZR87_RS00935 0.27 -1.9 186,527 + ABZR87_RS00935 0.40 +0.1 186,527 + ABZR87_RS00935 0.40 -1.7 186,528 - ABZR87_RS00935 0.41 -0.3 186,528 - ABZR87_RS00935 0.41 -1.2 186,530 + ABZR87_RS00935 0.41 -1.8 186,530 + ABZR87_RS00935 0.41 -2.2 186,530 + ABZR87_RS00935 0.41 -2.1 186,530 + ABZR87_RS00935 0.41 -1.2 186,531 - ABZR87_RS00935 0.41 -2.6 186,531 - ABZR87_RS00935 0.41 -2.0 186,531 - ABZR87_RS00935 0.41 -1.9 186,531 - ABZR87_RS00935 0.41 -1.0 186,531 - ABZR87_RS00935 0.41 -1.6 186,531 - ABZR87_RS00935 0.41 -3.4 186,531 - ABZR87_RS00935 0.41 -1.7 186,531 - ABZR87_RS00935 0.41 -3.4 186,531 - ABZR87_RS00935 0.41 -3.1 186,531 - ABZR87_RS00935 0.41 -1.3 186,560 + ABZR87_RS00935 0.43 -1.7 186,560 + ABZR87_RS00935 0.43 -2.6 186,560 + ABZR87_RS00935 0.43 -2.4 186,561 - ABZR87_RS00935 0.43 -5.2 187,048 + ABZR87_RS00935 0.74 -2.7 187,049 - ABZR87_RS00935 0.74 -2.5 187,049 - ABZR87_RS00935 0.74 -0.6 187,211 + ABZR87_RS00935 0.84 -3.3 187,211 + ABZR87_RS00935 0.84 -1.0 187,211 + ABZR87_RS00935 0.84 -1.3 187,212 - ABZR87_RS00935 0.84 -1.1 187,468 + +0.3 188,142 + ABZR87_RS00945 0.22 -0.6 188,142 + ABZR87_RS00945 0.22 -0.2 188,143 - ABZR87_RS00945 0.22 -1.1 188,143 - ABZR87_RS00945 0.22 -1.0 188,160 + ABZR87_RS00945 0.25 +0.6 188,322 + ABZR87_RS00945 0.50 -0.9 188,322 + ABZR87_RS00945 0.50 -1.4 188,322 + ABZR87_RS00945 0.50 -0.9 188,322 + ABZR87_RS00945 0.50 +0.7 188,322 + ABZR87_RS00945 0.50 -1.2 188,323 - ABZR87_RS00945 0.50 -0.4 188,323 - ABZR87_RS00945 0.50 +0.6 188,436 + ABZR87_RS00945 0.68 -1.5 188,436 + ABZR87_RS00945 0.68 -0.4 188,436 + ABZR87_RS00945 0.68 -0.7
Or see this region's nucleotide sequence