Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00870

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00860 and ABZR87_RS00865 are separated by 3 nucleotidesABZR87_RS00865 and ABZR87_RS00870 are separated by 125 nucleotidesABZR87_RS00870 and ABZR87_RS00875 are separated by 6 nucleotidesABZR87_RS00875 and ABZR87_RS00880 overlap by 4 nucleotides ABZR87_RS00860: ABZR87_RS00860 - SirB1 family protein, at 172,881 to 173,726 _RS00860 ABZR87_RS00865: ABZR87_RS00865 - VTT domain-containing protein, at 173,730 to 174,374 _RS00865 ABZR87_RS00870: ABZR87_RS00870 - DNA mismatch repair endonuclease MutL, at 174,500 to 176,407 _RS00870 ABZR87_RS00875: ABZR87_RS00875 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 176,414 to 177,391 _RS00875 ABZR87_RS00880: ABZR87_RS00880 - GNAT family N-acetyltransferase, at 177,388 to 177,915 _RS00880 Position (kb) 174 175 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 173.589 kb on + strand, within ABZR87_RS00860at 173.637 kb on + strand, within ABZR87_RS00860at 173.638 kb on - strand, within ABZR87_RS00860at 173.638 kb on - strand, within ABZR87_RS00860at 173.638 kb on - strand, within ABZR87_RS00860at 173.732 kb on - strandat 173.732 kb on - strandat 173.858 kb on + strand, within ABZR87_RS00865at 174.429 kb on + strandat 174.429 kb on + strandat 174.430 kb on - strandat 174.430 kb on - strandat 174.488 kb on + strandat 174.488 kb on + strandat 174.488 kb on + strandat 174.488 kb on + strandat 174.488 kb on + strandat 174.488 kb on + strandat 174.489 kb on - strandat 174.489 kb on - strandat 174.489 kb on - strandat 174.489 kb on - strandat 174.489 kb on - strandat 174.489 kb on - strandat 174.962 kb on + strand, within ABZR87_RS00870at 174.962 kb on + strand, within ABZR87_RS00870at 174.962 kb on + strand, within ABZR87_RS00870at 174.962 kb on + strand, within ABZR87_RS00870at 174.963 kb on - strand, within ABZR87_RS00870at 174.963 kb on - strand, within ABZR87_RS00870at 174.963 kb on - strand, within ABZR87_RS00870at 174.963 kb on - strand, within ABZR87_RS00870at 175.265 kb on + strand, within ABZR87_RS00870at 175.265 kb on + strand, within ABZR87_RS00870at 175.265 kb on + strand, within ABZR87_RS00870at 175.265 kb on + strand, within ABZR87_RS00870at 175.266 kb on - strand, within ABZR87_RS00870at 175.266 kb on - strand, within ABZR87_RS00870at 175.266 kb on - strand, within ABZR87_RS00870at 175.323 kb on - strand, within ABZR87_RS00870at 175.358 kb on + strand, within ABZR87_RS00870at 175.358 kb on + strand, within ABZR87_RS00870at 175.358 kb on + strand, within ABZR87_RS00870at 175.359 kb on - strand, within ABZR87_RS00870at 175.359 kb on - strand, within ABZR87_RS00870at 175.463 kb on + strand, within ABZR87_RS00870at 175.463 kb on + strand, within ABZR87_RS00870at 175.655 kb on + strand, within ABZR87_RS00870at 175.656 kb on - strand, within ABZR87_RS00870at 175.656 kb on - strand, within ABZR87_RS00870at 175.865 kb on + strand, within ABZR87_RS00870at 175.865 kb on + strand, within ABZR87_RS00870at 175.865 kb on + strand, within ABZR87_RS00870at 175.865 kb on + strand, within ABZR87_RS00870at 175.865 kb on + strand, within ABZR87_RS00870at 175.865 kb on + strand, within ABZR87_RS00870at 175.865 kb on + strand, within ABZR87_RS00870at 175.865 kb on + strand, within ABZR87_RS00870at 175.866 kb on - strand, within ABZR87_RS00870at 175.866 kb on - strand, within ABZR87_RS00870at 175.866 kb on - strand, within ABZR87_RS00870at 175.866 kb on - strand, within ABZR87_RS00870at 175.934 kb on + strand, within ABZR87_RS00870at 175.934 kb on + strand, within ABZR87_RS00870at 175.934 kb on + strand, within ABZR87_RS00870at 175.934 kb on + strand, within ABZR87_RS00870at 176.549 kb on + strand, within ABZR87_RS00875at 176.646 kb on - strand, within ABZR87_RS00875at 176.646 kb on - strand, within ABZR87_RS00875at 176.646 kb on - strand, within ABZR87_RS00875at 176.646 kb on - strand, within ABZR87_RS00875at 176.741 kb on + strand, within ABZR87_RS00875at 176.741 kb on + strand, within ABZR87_RS00875at 176.742 kb on - strand, within ABZR87_RS00875at 176.742 kb on - strand, within ABZR87_RS00875at 176.742 kb on - strand, within ABZR87_RS00875at 176.744 kb on + strand, within ABZR87_RS00875at 176.744 kb on + strand, within ABZR87_RS00875at 176.744 kb on + strand, within ABZR87_RS00875at 176.890 kb on - strand, within ABZR87_RS00875at 176.912 kb on - strand, within ABZR87_RS00875at 176.912 kb on - strand, within ABZR87_RS00875at 176.933 kb on + strand, within ABZR87_RS00875at 177.021 kb on - strand, within ABZR87_RS00875at 177.201 kb on - strand, within ABZR87_RS00875at 177.335 kb on + strandat 177.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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173,589 + ABZR87_RS00860 0.84 +1.0
173,637 + ABZR87_RS00860 0.89 +0.8
173,638 - ABZR87_RS00860 0.89 -2.1
173,638 - ABZR87_RS00860 0.89 +1.0
173,638 - ABZR87_RS00860 0.89 +0.2
173,732 - -0.9
173,732 - +0.7
173,858 + ABZR87_RS00865 0.20 +1.7
174,429 + +0.7
174,429 + -0.1
174,430 - +1.3
174,430 - +0.6
174,488 + -0.6
174,488 + -0.0
174,488 + +0.2
174,488 + -0.9
174,488 + -0.1
174,488 + -0.8
174,489 - +0.1
174,489 - -1.0
174,489 - -0.6
174,489 - -0.2
174,489 - -1.0
174,489 - -0.0
174,962 + ABZR87_RS00870 0.24 -0.6
174,962 + ABZR87_RS00870 0.24 -0.1
174,962 + ABZR87_RS00870 0.24 +1.0
174,962 + ABZR87_RS00870 0.24 +0.4
174,963 - ABZR87_RS00870 0.24 -0.1
174,963 - ABZR87_RS00870 0.24 +1.1
174,963 - ABZR87_RS00870 0.24 +1.2
174,963 - ABZR87_RS00870 0.24 -1.0
175,265 + ABZR87_RS00870 0.40 +0.5
175,265 + ABZR87_RS00870 0.40 -0.4
175,265 + ABZR87_RS00870 0.40 +0.4
175,265 + ABZR87_RS00870 0.40 -0.7
175,266 - ABZR87_RS00870 0.40 -0.0
175,266 - ABZR87_RS00870 0.40 +0.5
175,266 - ABZR87_RS00870 0.40 -0.5
175,323 - ABZR87_RS00870 0.43 +1.1
175,358 + ABZR87_RS00870 0.45 -0.6
175,358 + ABZR87_RS00870 0.45 -0.4
175,358 + ABZR87_RS00870 0.45 -1.3
175,359 - ABZR87_RS00870 0.45 +1.8
175,359 - ABZR87_RS00870 0.45 +0.8
175,463 + ABZR87_RS00870 0.50 +1.7
175,463 + ABZR87_RS00870 0.50 +0.3
175,655 + ABZR87_RS00870 0.61 -0.1
175,656 - ABZR87_RS00870 0.61 -2.7
175,656 - ABZR87_RS00870 0.61 +1.4
175,865 + ABZR87_RS00870 0.72 -0.1
175,865 + ABZR87_RS00870 0.72 -1.0
175,865 + ABZR87_RS00870 0.72 +0.6
175,865 + ABZR87_RS00870 0.72 +0.0
175,865 + ABZR87_RS00870 0.72 -0.5
175,865 + ABZR87_RS00870 0.72 -0.4
175,865 + ABZR87_RS00870 0.72 -0.6
175,865 + ABZR87_RS00870 0.72 -0.6
175,866 - ABZR87_RS00870 0.72 +0.5
175,866 - ABZR87_RS00870 0.72 -1.4
175,866 - ABZR87_RS00870 0.72 -0.9
175,866 - ABZR87_RS00870 0.72 -0.4
175,934 + ABZR87_RS00870 0.75 +0.6
175,934 + ABZR87_RS00870 0.75 -0.2
175,934 + ABZR87_RS00870 0.75 +1.0
175,934 + ABZR87_RS00870 0.75 -0.3
176,549 + ABZR87_RS00875 0.14 -2.3
176,646 - ABZR87_RS00875 0.24 -2.4
176,646 - ABZR87_RS00875 0.24 -1.1
176,646 - ABZR87_RS00875 0.24 +0.2
176,646 - ABZR87_RS00875 0.24 -2.4
176,741 + ABZR87_RS00875 0.33 -2.1
176,741 + ABZR87_RS00875 0.33 -1.9
176,742 - ABZR87_RS00875 0.34 -0.6
176,742 - ABZR87_RS00875 0.34 -2.1
176,742 - ABZR87_RS00875 0.34 -3.1
176,744 + ABZR87_RS00875 0.34 -2.1
176,744 + ABZR87_RS00875 0.34 +0.4
176,744 + ABZR87_RS00875 0.34 -2.3
176,890 - ABZR87_RS00875 0.49 -2.0
176,912 - ABZR87_RS00875 0.51 -1.9
176,912 - ABZR87_RS00875 0.51 -2.1
176,933 + ABZR87_RS00875 0.53 -2.5
177,021 - ABZR87_RS00875 0.62 -2.1
177,201 - ABZR87_RS00875 0.80 -2.1
177,335 + -2.8
177,336 - -2.3

Or see this region's nucleotide sequence