Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00370

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00365 and ABZR87_RS00370 are separated by 25 nucleotidesABZR87_RS00370 and ABZR87_RS00375 overlap by 4 nucleotides ABZR87_RS00365: ABZR87_RS00365 - mechanosensitive ion channel domain-containing protein, at 74,125 to 75,501 _RS00365 ABZR87_RS00370: ABZR87_RS00370 - phospholipase D family protein, at 75,527 to 76,096 _RS00370 ABZR87_RS00375: ABZR87_RS00375 - RsmB/NOP family class I SAM-dependent RNA methyltransferase, at 76,093 to 77,487 _RS00375 Position (kb) 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 74.559 kb on + strand, within ABZR87_RS00365at 74.560 kb on - strand, within ABZR87_RS00365at 74.621 kb on + strand, within ABZR87_RS00365at 74.621 kb on + strand, within ABZR87_RS00365at 74.621 kb on + strand, within ABZR87_RS00365at 74.621 kb on + strand, within ABZR87_RS00365at 74.622 kb on - strand, within ABZR87_RS00365at 74.622 kb on - strand, within ABZR87_RS00365at 74.622 kb on - strand, within ABZR87_RS00365at 74.622 kb on - strand, within ABZR87_RS00365at 74.622 kb on - strand, within ABZR87_RS00365at 74.690 kb on + strand, within ABZR87_RS00365at 74.690 kb on + strand, within ABZR87_RS00365at 74.690 kb on + strand, within ABZR87_RS00365at 74.690 kb on + strand, within ABZR87_RS00365at 74.691 kb on - strand, within ABZR87_RS00365at 74.691 kb on - strand, within ABZR87_RS00365at 74.691 kb on - strand, within ABZR87_RS00365at 74.691 kb on - strand, within ABZR87_RS00365at 75.011 kb on + strand, within ABZR87_RS00365at 75.012 kb on - strand, within ABZR87_RS00365at 75.012 kb on - strand, within ABZR87_RS00365at 75.044 kb on + strand, within ABZR87_RS00365at 75.044 kb on + strand, within ABZR87_RS00365at 75.044 kb on + strand, within ABZR87_RS00365at 75.045 kb on - strand, within ABZR87_RS00365at 75.045 kb on - strand, within ABZR87_RS00365at 75.045 kb on - strand, within ABZR87_RS00365at 75.045 kb on - strand, within ABZR87_RS00365at 75.045 kb on - strand, within ABZR87_RS00365at 75.146 kb on + strand, within ABZR87_RS00365at 75.147 kb on - strand, within ABZR87_RS00365at 75.147 kb on - strand, within ABZR87_RS00365at 75.147 kb on - strand, within ABZR87_RS00365at 75.158 kb on + strand, within ABZR87_RS00365at 75.158 kb on + strand, within ABZR87_RS00365at 75.158 kb on + strand, within ABZR87_RS00365at 75.158 kb on + strand, within ABZR87_RS00365at 75.159 kb on - strand, within ABZR87_RS00365at 75.159 kb on - strand, within ABZR87_RS00365at 75.233 kb on + strand, within ABZR87_RS00365at 75.233 kb on + strand, within ABZR87_RS00365at 75.234 kb on - strand, within ABZR87_RS00365at 75.234 kb on - strand, within ABZR87_RS00365at 75.501 kb on + strandat 75.501 kb on + strandat 75.502 kb on - strandat 75.502 kb on - strandat 75.529 kb on - strandat 75.582 kb on + strandat 75.583 kb on - strandat 75.583 kb on - strandat 75.620 kb on + strand, within ABZR87_RS00370at 75.620 kb on + strand, within ABZR87_RS00370at 75.620 kb on + strand, within ABZR87_RS00370at 75.621 kb on - strand, within ABZR87_RS00370at 75.621 kb on - strand, within ABZR87_RS00370at 75.621 kb on - strand, within ABZR87_RS00370at 75.735 kb on + strand, within ABZR87_RS00370at 75.736 kb on - strand, within ABZR87_RS00370at 75.736 kb on - strand, within ABZR87_RS00370at 75.736 kb on - strand, within ABZR87_RS00370at 75.874 kb on + strand, within ABZR87_RS00370at 75.875 kb on - strand, within ABZR87_RS00370at 75.897 kb on + strand, within ABZR87_RS00370at 75.897 kb on + strand, within ABZR87_RS00370at 75.898 kb on - strand, within ABZR87_RS00370at 75.898 kb on - strand, within ABZR87_RS00370at 76.151 kb on + strandat 76.151 kb on + strandat 76.163 kb on + strandat 76.164 kb on - strandat 76.298 kb on + strand, within ABZR87_RS00375at 76.299 kb on - strand, within ABZR87_RS00375at 76.598 kb on + strand, within ABZR87_RS00375at 76.598 kb on + strand, within ABZR87_RS00375at 76.598 kb on + strand, within ABZR87_RS00375at 76.599 kb on - strand, within ABZR87_RS00375at 76.599 kb on - strand, within ABZR87_RS00375at 76.599 kb on - strand, within ABZR87_RS00375at 76.599 kb on - strand, within ABZR87_RS00375at 76.599 kb on - strand, within ABZR87_RS00375at 76.599 kb on - strand, within ABZR87_RS00375at 76.603 kb on - strand, within ABZR87_RS00375

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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74,559 + ABZR87_RS00365 0.32 +0.1
74,560 - ABZR87_RS00365 0.32 +1.2
74,621 + ABZR87_RS00365 0.36 -0.2
74,621 + ABZR87_RS00365 0.36 +1.7
74,621 + ABZR87_RS00365 0.36 -0.0
74,621 + ABZR87_RS00365 0.36 +0.6
74,622 - ABZR87_RS00365 0.36 -0.4
74,622 - ABZR87_RS00365 0.36 -0.8
74,622 - ABZR87_RS00365 0.36 -0.5
74,622 - ABZR87_RS00365 0.36 -0.7
74,622 - ABZR87_RS00365 0.36 +1.1
74,690 + ABZR87_RS00365 0.41 +0.8
74,690 + ABZR87_RS00365 0.41 -0.6
74,690 + ABZR87_RS00365 0.41 -1.6
74,690 + ABZR87_RS00365 0.41 -0.2
74,691 - ABZR87_RS00365 0.41 +0.2
74,691 - ABZR87_RS00365 0.41 -0.2
74,691 - ABZR87_RS00365 0.41 +0.7
74,691 - ABZR87_RS00365 0.41 +0.2
75,011 + ABZR87_RS00365 0.64 +1.3
75,012 - ABZR87_RS00365 0.64 +0.5
75,012 - ABZR87_RS00365 0.64 +0.0
75,044 + ABZR87_RS00365 0.67 +0.6
75,044 + ABZR87_RS00365 0.67 +0.3
75,044 + ABZR87_RS00365 0.67 +0.9
75,045 - ABZR87_RS00365 0.67 +0.2
75,045 - ABZR87_RS00365 0.67 -0.9
75,045 - ABZR87_RS00365 0.67 +0.0
75,045 - ABZR87_RS00365 0.67 -0.3
75,045 - ABZR87_RS00365 0.67 +1.6
75,146 + ABZR87_RS00365 0.74 +0.8
75,147 - ABZR87_RS00365 0.74 -0.3
75,147 - ABZR87_RS00365 0.74 +1.6
75,147 - ABZR87_RS00365 0.74 +0.5
75,158 + ABZR87_RS00365 0.75 -0.6
75,158 + ABZR87_RS00365 0.75 -1.9
75,158 + ABZR87_RS00365 0.75 +2.2
75,158 + ABZR87_RS00365 0.75 +0.4
75,159 - ABZR87_RS00365 0.75 -1.3
75,159 - ABZR87_RS00365 0.75 +0.4
75,233 + ABZR87_RS00365 0.80 -2.6
75,233 + ABZR87_RS00365 0.80 +0.7
75,234 - ABZR87_RS00365 0.81 +2.0
75,234 - ABZR87_RS00365 0.81 +0.8
75,501 + +0.7
75,501 + +1.0
75,502 - -0.0
75,502 - -0.2
75,529 - +1.2
75,582 + +0.7
75,583 - +0.0
75,583 - +0.2
75,620 + ABZR87_RS00370 0.16 -0.6
75,620 + ABZR87_RS00370 0.16 -1.1
75,620 + ABZR87_RS00370 0.16 -0.5
75,621 - ABZR87_RS00370 0.16 +0.2
75,621 - ABZR87_RS00370 0.16 +1.0
75,621 - ABZR87_RS00370 0.16 -0.4
75,735 + ABZR87_RS00370 0.36 +0.8
75,736 - ABZR87_RS00370 0.37 +0.1
75,736 - ABZR87_RS00370 0.37 -1.9
75,736 - ABZR87_RS00370 0.37 -2.9
75,874 + ABZR87_RS00370 0.61 -2.5
75,875 - ABZR87_RS00370 0.61 -1.4
75,897 + ABZR87_RS00370 0.65 -0.2
75,897 + ABZR87_RS00370 0.65 -0.6
75,898 - ABZR87_RS00370 0.65 -1.5
75,898 - ABZR87_RS00370 0.65 -0.4
76,151 + +0.2
76,151 + +0.9
76,163 + -0.6
76,164 - +2.2
76,298 + ABZR87_RS00375 0.15 +0.3
76,299 - ABZR87_RS00375 0.15 +0.5
76,598 + ABZR87_RS00375 0.36 +2.0
76,598 + ABZR87_RS00375 0.36 +0.6
76,598 + ABZR87_RS00375 0.36 +0.2
76,599 - ABZR87_RS00375 0.36 +1.4
76,599 - ABZR87_RS00375 0.36 +0.7
76,599 - ABZR87_RS00375 0.36 -0.7
76,599 - ABZR87_RS00375 0.36 +0.2
76,599 - ABZR87_RS00375 0.36 +0.8
76,599 - ABZR87_RS00375 0.36 -0.3
76,603 - ABZR87_RS00375 0.37 +0.1

Or see this region's nucleotide sequence