Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000795

Experiment: R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000794 and ABIE53_000795 are separated by 30 nucleotidesABIE53_000795 and ABIE53_000796 are separated by 9 nucleotides ABIE53_000794: ABIE53_000794 - ABC-type transport system involved in Fe-S cluster assembly fused permease/ATPase subunit, at 859,689 to 861,599 _000794 ABIE53_000795: ABIE53_000795 - MurNAc alpha-1-phosphate uridylyltransferase, at 861,630 to 862,337 _000795 ABIE53_000796: ABIE53_000796 - aminoglycoside/choline kinase family phosphotransferase, at 862,347 to 863,459 _000796 Position (kb) 861 862 863Strain fitness (log2 ratio) -2 -1 0 1 2 3at 860.649 kb on + strand, within ABIE53_000794at 860.649 kb on + strand, within ABIE53_000794at 860.649 kb on + strand, within ABIE53_000794at 860.649 kb on + strand, within ABIE53_000794at 860.649 kb on + strand, within ABIE53_000794at 860.650 kb on - strand, within ABIE53_000794at 860.650 kb on - strand, within ABIE53_000794at 860.650 kb on - strand, within ABIE53_000794at 860.650 kb on - strand, within ABIE53_000794at 860.650 kb on - strand, within ABIE53_000794at 860.651 kb on + strand, within ABIE53_000794at 860.651 kb on + strand, within ABIE53_000794at 860.652 kb on - strand, within ABIE53_000794at 860.652 kb on - strand, within ABIE53_000794at 860.680 kb on - strand, within ABIE53_000794at 860.823 kb on + strand, within ABIE53_000794at 860.824 kb on - strand, within ABIE53_000794at 860.900 kb on + strand, within ABIE53_000794at 860.901 kb on - strand, within ABIE53_000794at 860.901 kb on - strand, within ABIE53_000794at 860.946 kb on + strand, within ABIE53_000794at 860.946 kb on + strand, within ABIE53_000794at 860.946 kb on + strand, within ABIE53_000794at 860.946 kb on + strand, within ABIE53_000794at 860.947 kb on - strand, within ABIE53_000794at 860.947 kb on - strand, within ABIE53_000794at 860.947 kb on - strand, within ABIE53_000794at 860.947 kb on - strand, within ABIE53_000794at 860.947 kb on - strand, within ABIE53_000794at 861.078 kb on + strand, within ABIE53_000794at 861.078 kb on + strand, within ABIE53_000794at 861.079 kb on - strand, within ABIE53_000794at 861.081 kb on + strand, within ABIE53_000794at 861.081 kb on + strand, within ABIE53_000794at 861.081 kb on + strand, within ABIE53_000794at 861.082 kb on - strand, within ABIE53_000794at 861.082 kb on - strand, within ABIE53_000794at 861.082 kb on - strand, within ABIE53_000794at 861.082 kb on - strand, within ABIE53_000794at 861.082 kb on - strand, within ABIE53_000794at 861.082 kb on - strand, within ABIE53_000794at 861.093 kb on + strand, within ABIE53_000794at 861.093 kb on + strand, within ABIE53_000794at 861.094 kb on - strand, within ABIE53_000794at 861.149 kb on + strand, within ABIE53_000794at 861.149 kb on + strand, within ABIE53_000794at 861.150 kb on - strand, within ABIE53_000794at 861.183 kb on + strand, within ABIE53_000794at 861.183 kb on + strand, within ABIE53_000794at 861.183 kb on + strand, within ABIE53_000794at 861.183 kb on + strand, within ABIE53_000794at 861.184 kb on - strand, within ABIE53_000794at 861.280 kb on + strand, within ABIE53_000794at 861.280 kb on + strand, within ABIE53_000794at 861.280 kb on + strand, within ABIE53_000794at 861.280 kb on + strand, within ABIE53_000794at 861.281 kb on - strand, within ABIE53_000794at 861.281 kb on - strand, within ABIE53_000794at 861.281 kb on - strand, within ABIE53_000794at 861.703 kb on + strand, within ABIE53_000795at 861.703 kb on + strand, within ABIE53_000795at 861.703 kb on + strand, within ABIE53_000795at 861.703 kb on + strand, within ABIE53_000795at 861.704 kb on - strand, within ABIE53_000795at 861.704 kb on - strand, within ABIE53_000795at 861.704 kb on - strand, within ABIE53_000795at 861.704 kb on - strand, within ABIE53_000795at 861.704 kb on - strand, within ABIE53_000795at 861.704 kb on - strand, within ABIE53_000795at 861.704 kb on - strand, within ABIE53_000795at 861.706 kb on - strand, within ABIE53_000795at 861.706 kb on - strand, within ABIE53_000795at 861.748 kb on + strand, within ABIE53_000795at 861.749 kb on - strand, within ABIE53_000795at 861.749 kb on - strand, within ABIE53_000795at 861.806 kb on - strand, within ABIE53_000795at 861.806 kb on - strand, within ABIE53_000795at 861.976 kb on + strand, within ABIE53_000795at 861.976 kb on + strand, within ABIE53_000795at 861.991 kb on + strand, within ABIE53_000795at 861.992 kb on - strand, within ABIE53_000795at 861.992 kb on - strand, within ABIE53_000795at 862.049 kb on + strand, within ABIE53_000795at 862.050 kb on - strand, within ABIE53_000795at 862.102 kb on + strand, within ABIE53_000795at 862.102 kb on + strand, within ABIE53_000795at 862.103 kb on - strand, within ABIE53_000795at 862.103 kb on - strand, within ABIE53_000795at 862.357 kb on + strandat 862.358 kb on - strandat 862.423 kb on + strandat 862.423 kb on + strandat 862.424 kb on - strandat 862.424 kb on - strandat 862.424 kb on - strandat 862.477 kb on + strand, within ABIE53_000796at 862.477 kb on + strand, within ABIE53_000796at 862.477 kb on + strand, within ABIE53_000796at 862.477 kb on + strand, within ABIE53_000796at 862.477 kb on + strand, within ABIE53_000796at 862.477 kb on + strand, within ABIE53_000796at 862.477 kb on + strand, within ABIE53_000796at 862.477 kb on + strand, within ABIE53_000796at 862.477 kb on + strand, within ABIE53_000796at 862.478 kb on - strand, within ABIE53_000796at 862.478 kb on - strand, within ABIE53_000796at 862.478 kb on - strand, within ABIE53_000796at 862.478 kb on - strand, within ABIE53_000796at 862.478 kb on - strand, within ABIE53_000796at 862.498 kb on + strand, within ABIE53_000796at 862.532 kb on + strand, within ABIE53_000796at 862.532 kb on + strand, within ABIE53_000796at 862.532 kb on + strand, within ABIE53_000796at 862.532 kb on + strand, within ABIE53_000796at 862.532 kb on + strand, within ABIE53_000796at 862.533 kb on - strand, within ABIE53_000796at 862.533 kb on - strand, within ABIE53_000796at 862.533 kb on - strand, within ABIE53_000796at 862.533 kb on - strand, within ABIE53_000796at 862.533 kb on - strand, within ABIE53_000796at 862.533 kb on - strand, within ABIE53_000796at 862.533 kb on - strand, within ABIE53_000796at 862.533 kb on - strand, within ABIE53_000796at 862.533 kb on - strand, within ABIE53_000796at 862.533 kb on - strand, within ABIE53_000796at 862.533 kb on - strand, within ABIE53_000796at 862.533 kb on - strand, within ABIE53_000796at 862.567 kb on + strand, within ABIE53_000796at 862.567 kb on + strand, within ABIE53_000796at 862.568 kb on - strand, within ABIE53_000796at 862.568 kb on - strand, within ABIE53_000796at 862.624 kb on + strand, within ABIE53_000796at 862.624 kb on + strand, within ABIE53_000796at 862.627 kb on + strand, within ABIE53_000796at 862.627 kb on + strand, within ABIE53_000796at 862.627 kb on + strand, within ABIE53_000796at 862.627 kb on + strand, within ABIE53_000796at 862.628 kb on - strand, within ABIE53_000796at 862.628 kb on - strand, within ABIE53_000796at 862.628 kb on - strand, within ABIE53_000796at 862.628 kb on - strand, within ABIE53_000796at 862.628 kb on - strand, within ABIE53_000796at 862.628 kb on - strand, within ABIE53_000796at 862.628 kb on - strand, within ABIE53_000796at 862.699 kb on + strand, within ABIE53_000796at 862.699 kb on + strand, within ABIE53_000796at 862.699 kb on + strand, within ABIE53_000796at 862.699 kb on + strand, within ABIE53_000796at 862.699 kb on + strand, within ABIE53_000796at 862.700 kb on - strand, within ABIE53_000796at 862.700 kb on - strand, within ABIE53_000796at 862.700 kb on - strand, within ABIE53_000796at 862.700 kb on - strand, within ABIE53_000796at 862.700 kb on - strand, within ABIE53_000796at 862.700 kb on - strand, within ABIE53_000796at 862.716 kb on + strand, within ABIE53_000796at 862.716 kb on + strand, within ABIE53_000796at 862.717 kb on - strand, within ABIE53_000796at 862.895 kb on + strand, within ABIE53_000796at 863.107 kb on + strand, within ABIE53_000796at 863.108 kb on - strand, within ABIE53_000796at 863.292 kb on - strand, within ABIE53_000796at 863.308 kb on + strand, within ABIE53_000796at 863.309 kb on - strand, within ABIE53_000796at 863.309 kb on - strand, within ABIE53_000796

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM
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860,649 + ABIE53_000794 0.50 +0.8
860,649 + ABIE53_000794 0.50 -0.5
860,649 + ABIE53_000794 0.50 -0.7
860,649 + ABIE53_000794 0.50 -0.4
860,649 + ABIE53_000794 0.50 -0.7
860,650 - ABIE53_000794 0.50 -0.6
860,650 - ABIE53_000794 0.50 -0.7
860,650 - ABIE53_000794 0.50 +2.4
860,650 - ABIE53_000794 0.50 -0.2
860,650 - ABIE53_000794 0.50 +0.1
860,651 + ABIE53_000794 0.50 +0.2
860,651 + ABIE53_000794 0.50 -0.2
860,652 - ABIE53_000794 0.50 +1.8
860,652 - ABIE53_000794 0.50 +2.4
860,680 - ABIE53_000794 0.52 +0.1
860,823 + ABIE53_000794 0.59 -0.2
860,824 - ABIE53_000794 0.59 +1.3
860,900 + ABIE53_000794 0.63 +1.4
860,901 - ABIE53_000794 0.63 -1.0
860,901 - ABIE53_000794 0.63 +0.1
860,946 + ABIE53_000794 0.66 -0.6
860,946 + ABIE53_000794 0.66 +2.8
860,946 + ABIE53_000794 0.66 +1.0
860,946 + ABIE53_000794 0.66 -0.2
860,947 - ABIE53_000794 0.66 +1.8
860,947 - ABIE53_000794 0.66 +0.8
860,947 - ABIE53_000794 0.66 +1.8
860,947 - ABIE53_000794 0.66 +1.0
860,947 - ABIE53_000794 0.66 -0.5
861,078 + ABIE53_000794 0.73 -1.7
861,078 + ABIE53_000794 0.73 +2.4
861,079 - ABIE53_000794 0.73 -0.6
861,081 + ABIE53_000794 0.73 -0.5
861,081 + ABIE53_000794 0.73 -0.2
861,081 + ABIE53_000794 0.73 +0.4
861,082 - ABIE53_000794 0.73 +1.8
861,082 - ABIE53_000794 0.73 +0.8
861,082 - ABIE53_000794 0.73 +2.4
861,082 - ABIE53_000794 0.73 +1.4
861,082 - ABIE53_000794 0.73 -1.2
861,082 - ABIE53_000794 0.73 +1.8
861,093 + ABIE53_000794 0.73 +0.4
861,093 + ABIE53_000794 0.73 +0.8
861,094 - ABIE53_000794 0.74 -1.3
861,149 + ABIE53_000794 0.76 +3.0
861,149 + ABIE53_000794 0.76 -0.5
861,150 - ABIE53_000794 0.76 +0.1
861,183 + ABIE53_000794 0.78 +0.4
861,183 + ABIE53_000794 0.78 -0.2
861,183 + ABIE53_000794 0.78 -0.6
861,183 + ABIE53_000794 0.78 -1.2
861,184 - ABIE53_000794 0.78 -0.1
861,280 + ABIE53_000794 0.83 -1.2
861,280 + ABIE53_000794 0.83 -2.2
861,280 + ABIE53_000794 0.83 -0.2
861,280 + ABIE53_000794 0.83 +0.8
861,281 - ABIE53_000794 0.83 -0.3
861,281 - ABIE53_000794 0.83 +0.8
861,281 - ABIE53_000794 0.83 -1.7
861,703 + ABIE53_000795 0.10 -2.3
861,703 + ABIE53_000795 0.10 -0.2
861,703 + ABIE53_000795 0.10 -1.2
861,703 + ABIE53_000795 0.10 +1.8
861,704 - ABIE53_000795 0.10 +2.4
861,704 - ABIE53_000795 0.10 -0.4
861,704 - ABIE53_000795 0.10 -2.0
861,704 - ABIE53_000795 0.10 -2.2
861,704 - ABIE53_000795 0.10 +0.8
861,704 - ABIE53_000795 0.10 +1.8
861,704 - ABIE53_000795 0.10 +2.4
861,706 - ABIE53_000795 0.11 -0.2
861,706 - ABIE53_000795 0.11 -0.2
861,748 + ABIE53_000795 0.17 -0.7
861,749 - ABIE53_000795 0.17 -1.2
861,749 - ABIE53_000795 0.17 -0.7
861,806 - ABIE53_000795 0.25 -2.6
861,806 - ABIE53_000795 0.25 -1.3
861,976 + ABIE53_000795 0.49 +0.8
861,976 + ABIE53_000795 0.49 -0.2
861,991 + ABIE53_000795 0.51 -2.6
861,992 - ABIE53_000795 0.51 -0.2
861,992 - ABIE53_000795 0.51 -2.6
862,049 + ABIE53_000795 0.59 -0.7
862,050 - ABIE53_000795 0.59 -0.2
862,102 + ABIE53_000795 0.67 -1.2
862,102 + ABIE53_000795 0.67 -0.7
862,103 - ABIE53_000795 0.67 -0.7
862,103 - ABIE53_000795 0.67 -2.6
862,357 + -0.2
862,358 - +1.2
862,423 + +0.6
862,423 + +1.8
862,424 - +0.8
862,424 - -0.2
862,424 - +0.8
862,477 + ABIE53_000796 0.12 +0.8
862,477 + ABIE53_000796 0.12 +2.4
862,477 + ABIE53_000796 0.12 -1.7
862,477 + ABIE53_000796 0.12 +0.2
862,477 + ABIE53_000796 0.12 -0.6
862,477 + ABIE53_000796 0.12 +0.8
862,477 + ABIE53_000796 0.12 +1.3
862,477 + ABIE53_000796 0.12 +1.2
862,477 + ABIE53_000796 0.12 -0.3
862,478 - ABIE53_000796 0.12 +0.3
862,478 - ABIE53_000796 0.12 -1.2
862,478 - ABIE53_000796 0.12 +0.1
862,478 - ABIE53_000796 0.12 -0.4
862,478 - ABIE53_000796 0.12 +0.1
862,498 + ABIE53_000796 0.14 -1.0
862,532 + ABIE53_000796 0.17 +0.0
862,532 + ABIE53_000796 0.17 -0.3
862,532 + ABIE53_000796 0.17 -1.5
862,532 + ABIE53_000796 0.17 +0.8
862,532 + ABIE53_000796 0.17 +0.0
862,533 - ABIE53_000796 0.17 +1.4
862,533 - ABIE53_000796 0.17 -0.5
862,533 - ABIE53_000796 0.17 -2.0
862,533 - ABIE53_000796 0.17 +0.1
862,533 - ABIE53_000796 0.17 -0.6
862,533 - ABIE53_000796 0.17 -1.2
862,533 - ABIE53_000796 0.17 -1.6
862,533 - ABIE53_000796 0.17 +1.0
862,533 - ABIE53_000796 0.17 +1.4
862,533 - ABIE53_000796 0.17 +0.8
862,533 - ABIE53_000796 0.17 +1.8
862,533 - ABIE53_000796 0.17 -1.3
862,567 + ABIE53_000796 0.20 +1.3
862,567 + ABIE53_000796 0.20 -1.6
862,568 - ABIE53_000796 0.20 +0.8
862,568 - ABIE53_000796 0.20 -0.2
862,624 + ABIE53_000796 0.25 -0.2
862,624 + ABIE53_000796 0.25 -1.3
862,627 + ABIE53_000796 0.25 +0.6
862,627 + ABIE53_000796 0.25 -0.4
862,627 + ABIE53_000796 0.25 +0.3
862,627 + ABIE53_000796 0.25 -0.5
862,628 - ABIE53_000796 0.25 -1.9
862,628 - ABIE53_000796 0.25 +1.4
862,628 - ABIE53_000796 0.25 -2.5
862,628 - ABIE53_000796 0.25 -0.7
862,628 - ABIE53_000796 0.25 +0.4
862,628 - ABIE53_000796 0.25 +0.8
862,628 - ABIE53_000796 0.25 -0.2
862,699 + ABIE53_000796 0.32 -0.7
862,699 + ABIE53_000796 0.32 -0.2
862,699 + ABIE53_000796 0.32 -0.3
862,699 + ABIE53_000796 0.32 -0.6
862,699 + ABIE53_000796 0.32 +0.1
862,700 - ABIE53_000796 0.32 -0.5
862,700 - ABIE53_000796 0.32 -0.0
862,700 - ABIE53_000796 0.32 +1.0
862,700 - ABIE53_000796 0.32 +0.8
862,700 - ABIE53_000796 0.32 +1.8
862,700 - ABIE53_000796 0.32 +1.5
862,716 + ABIE53_000796 0.33 +2.4
862,716 + ABIE53_000796 0.33 +0.8
862,717 - ABIE53_000796 0.33 +0.5
862,895 + ABIE53_000796 0.49 -0.7
863,107 + ABIE53_000796 0.68 +0.9
863,108 - ABIE53_000796 0.68 -0.5
863,292 - ABIE53_000796 0.85 -0.3
863,308 + ABIE53_000796 0.86 +0.8
863,309 - ABIE53_000796 0.86 -0.5
863,309 - ABIE53_000796 0.86 -0.3

Or see this region's nucleotide sequence