Experiment: MoLS4 with L-Leucine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0271 and DVU0272 are separated by 296 nucleotides DVU0272 and DVU0273 are separated by 36 nucleotides DVU0273 and DVU0274 are separated by 311 nucleotides DVU0274 and DVU0275 are separated by 294 nucleotides
DVU0271: DVU0271 - response regulator (TIGR), at 313,230 to 314,720
DVU0271
DVU0272: DVU0272 - hypothetical protein (TIGR), at 315,017 to 315,112
DVU0272
DVU0273: DVU0273 - conserved hypothetical protein (TIGR), at 315,149 to 316,666
DVU0273
DVU0274: DVU0274 - hypothetical protein (TIGR), at 316,978 to 317,349
DVU0274
DVU0275: DVU0275 - polysaccharide deacetylase family protein (TIGR), at 317,644 to 318,339
DVU0275
Position (kb) 315
316
317 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 314.173 kb on - strand, within DVU0271 at 314.173 kb on - strand, within DVU0271 at 314.212 kb on + strand, within DVU0271 at 314.304 kb on + strand, within DVU0271 at 314.310 kb on - strand, within DVU0271 at 314.366 kb on - strand, within DVU0271 at 314.452 kb on - strand, within DVU0271 at 314.467 kb on + strand, within DVU0271 at 314.499 kb on + strand, within DVU0271 at 314.562 kb on + strand, within DVU0271 at 314.562 kb on + strand, within DVU0271 at 314.570 kb on - strand, within DVU0271 at 314.572 kb on - strand at 314.640 kb on - strand at 314.680 kb on + strand at 314.714 kb on + strand at 314.714 kb on + strand at 314.714 kb on + strand at 314.714 kb on + strand at 314.714 kb on + strand at 314.714 kb on + strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.722 kb on - strand at 314.732 kb on - strand at 314.952 kb on - strand at 315.003 kb on + strand at 315.027 kb on - strand, within DVU0272 at 315.047 kb on + strand, within DVU0272 at 315.050 kb on - strand, within DVU0272 at 315.050 kb on - strand, within DVU0272 at 315.050 kb on - strand, within DVU0272 at 315.055 kb on - strand, within DVU0272 at 315.057 kb on - strand, within DVU0272 at 315.094 kb on + strand, within DVU0272 at 315.151 kb on + strand at 315.239 kb on - strand at 315.266 kb on + strand at 315.266 kb on + strand at 315.274 kb on - strand at 315.446 kb on + strand, within DVU0273 at 315.543 kb on + strand, within DVU0273 at 315.585 kb on + strand, within DVU0273 at 315.585 kb on + strand, within DVU0273 at 315.593 kb on - strand, within DVU0273 at 315.632 kb on + strand, within DVU0273 at 315.659 kb on - strand, within DVU0273 at 315.691 kb on + strand, within DVU0273 at 315.699 kb on - strand, within DVU0273 at 315.699 kb on - strand, within DVU0273 at 315.699 kb on - strand, within DVU0273 at 315.699 kb on - strand, within DVU0273 at 315.783 kb on - strand, within DVU0273 at 315.886 kb on - strand, within DVU0273 at 315.886 kb on - strand, within DVU0273 at 315.907 kb on - strand, within DVU0273 at 315.921 kb on - strand, within DVU0273 at 315.949 kb on + strand, within DVU0273 at 315.965 kb on - strand, within DVU0273 at 315.967 kb on + strand, within DVU0273 at 315.975 kb on - strand, within DVU0273 at 315.982 kb on - strand, within DVU0273 at 315.999 kb on - strand, within DVU0273 at 316.138 kb on + strand, within DVU0273 at 316.166 kb on - strand, within DVU0273 at 316.202 kb on - strand, within DVU0273 at 316.212 kb on + strand, within DVU0273 at 316.238 kb on + strand, within DVU0273 at 316.370 kb on - strand, within DVU0273 at 316.379 kb on - strand, within DVU0273 at 316.442 kb on - strand, within DVU0273 at 316.475 kb on + strand, within DVU0273 at 316.487 kb on + strand, within DVU0273 at 316.487 kb on + strand, within DVU0273 at 316.487 kb on + strand, within DVU0273 at 316.495 kb on - strand, within DVU0273 at 316.497 kb on - strand, within DVU0273 at 316.508 kb on + strand, within DVU0273 at 316.543 kb on + strand at 316.584 kb on - strand at 316.644 kb on - strand at 316.710 kb on - strand at 316.745 kb on - strand at 316.745 kb on - strand at 316.771 kb on - strand at 316.810 kb on + strand at 316.828 kb on - strand at 316.906 kb on - strand at 316.919 kb on + strand at 316.940 kb on + strand at 317.022 kb on + strand, within DVU0274 at 317.055 kb on - strand, within DVU0274 at 317.112 kb on - strand, within DVU0274 at 317.164 kb on - strand, within DVU0274 at 317.177 kb on + strand, within DVU0274 at 317.234 kb on + strand, within DVU0274 at 317.294 kb on - strand, within DVU0274 at 317.367 kb on + strand at 317.367 kb on + strand at 317.375 kb on - strand at 317.515 kb on + strand at 317.523 kb on - strand at 317.555 kb on + strand at 317.563 kb on - strand at 317.593 kb on + strand at 317.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine as nutrient 10mM remove 314,173 - DVU0271 0.63 -0.7 314,173 - DVU0271 0.63 +0.7 314,212 + DVU0271 0.66 +0.5 314,304 + DVU0271 0.72 -1.1 314,310 - DVU0271 0.72 -1.2 314,366 - DVU0271 0.76 -1.3 314,452 - DVU0271 0.82 -0.6 314,467 + DVU0271 0.83 +0.3 314,499 + DVU0271 0.85 -0.2 314,562 + DVU0271 0.89 +0.5 314,562 + DVU0271 0.89 -0.1 314,570 - DVU0271 0.90 +0.5 314,572 - +0.7 314,640 - -1.9 314,680 + -0.1 314,714 + -0.5 314,714 + -0.9 314,714 + +1.0 314,714 + -0.8 314,714 + +4.5 314,714 + -0.2 314,722 - +0.0 314,722 - -1.2 314,722 - +1.8 314,722 - -0.5 314,722 - +0.1 314,722 - -1.5 314,722 - +0.7 314,722 - +0.1 314,722 - -0.2 314,722 - -0.7 314,722 - -1.8 314,732 - -0.8 314,952 - -0.1 315,003 + +0.1 315,027 - DVU0272 0.10 +0.2 315,047 + DVU0272 0.31 +0.1 315,050 - DVU0272 0.34 +0.5 315,050 - DVU0272 0.34 -0.3 315,050 - DVU0272 0.34 +0.4 315,055 - DVU0272 0.40 -0.0 315,057 - DVU0272 0.42 +1.4 315,094 + DVU0272 0.80 -0.1 315,151 + +0.3 315,239 - -0.1 315,266 + -1.5 315,266 + +1.2 315,274 - -0.6 315,446 + DVU0273 0.20 -0.5 315,543 + DVU0273 0.26 -1.8 315,585 + DVU0273 0.29 +1.2 315,585 + DVU0273 0.29 -1.4 315,593 - DVU0273 0.29 -0.2 315,632 + DVU0273 0.32 -1.9 315,659 - DVU0273 0.34 +0.6 315,691 + DVU0273 0.36 -0.5 315,699 - DVU0273 0.36 -1.4 315,699 - DVU0273 0.36 +0.1 315,699 - DVU0273 0.36 -0.5 315,699 - DVU0273 0.36 +1.8 315,783 - DVU0273 0.42 +0.0 315,886 - DVU0273 0.49 -0.4 315,886 - DVU0273 0.49 +0.9 315,907 - DVU0273 0.50 -0.2 315,921 - DVU0273 0.51 +0.1 315,949 + DVU0273 0.53 -0.9 315,965 - DVU0273 0.54 +1.1 315,967 + DVU0273 0.54 -2.3 315,975 - DVU0273 0.54 -2.1 315,982 - DVU0273 0.55 +0.1 315,999 - DVU0273 0.56 -0.8 316,138 + DVU0273 0.65 -1.0 316,166 - DVU0273 0.67 -1.1 316,202 - DVU0273 0.69 -1.8 316,212 + DVU0273 0.70 -0.7 316,238 + DVU0273 0.72 -1.5 316,370 - DVU0273 0.80 +0.1 316,379 - DVU0273 0.81 +0.3 316,442 - DVU0273 0.85 -0.5 316,475 + DVU0273 0.87 -0.3 316,487 + DVU0273 0.88 -0.3 316,487 + DVU0273 0.88 -0.7 316,487 + DVU0273 0.88 -0.1 316,495 - DVU0273 0.89 -0.0 316,497 - DVU0273 0.89 +0.6 316,508 + DVU0273 0.90 -0.4 316,543 + -0.5 316,584 - +0.0 316,644 - +0.0 316,710 - -0.1 316,745 - -0.1 316,745 - +0.2 316,771 - -1.0 316,810 + -0.3 316,828 - +1.0 316,906 - -0.3 316,919 + -0.2 316,940 + -0.7 317,022 + DVU0274 0.12 -1.4 317,055 - DVU0274 0.21 +0.4 317,112 - DVU0274 0.36 -0.1 317,164 - DVU0274 0.50 -0.2 317,177 + DVU0274 0.53 +0.4 317,234 + DVU0274 0.69 -2.0 317,294 - DVU0274 0.85 -0.2 317,367 + +0.1 317,367 + -0.0 317,375 - +0.5 317,515 + +1.0 317,523 - +0.1 317,555 + -1.1 317,563 - -0.2 317,593 + +0.4 317,634 - -2.3
Or see this region's nucleotide sequence