Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0112

Experiment: MoLS4 with L-Leucine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntntrC and DVU0111 are separated by 133 nucleotidesDVU0111 and phrB are separated by 8 nucleotidesphrB and hisI are separated by 641 nucleotides DVU0110: ntrC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 142,672 to 144,102 ntrC DVU0111: DVU0111 - response regulator (TIGR), at 144,236 to 145,042 DVU0111 DVU0112: phrB - deoxyribodipyrimidine photolyase, putative (TIGR), at 145,051 to 146,475 phrB DVU0113: hisI - phosphoribosyl-AMP cyclohydrolase (TIGR), at 147,117 to 147,497 hisI Position (kb) 145 146 147Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 144.101 kb on - strandat 144.183 kb on + strandat 144.255 kb on + strandat 144.263 kb on + strandat 144.263 kb on + strandat 144.271 kb on - strandat 144.273 kb on - strandat 144.287 kb on + strandat 144.287 kb on + strandat 144.300 kb on - strandat 144.386 kb on + strand, within DVU0111at 144.497 kb on + strand, within DVU0111at 144.585 kb on - strand, within DVU0111at 144.713 kb on + strand, within DVU0111at 144.723 kb on + strand, within DVU0111at 144.730 kb on - strand, within DVU0111at 144.765 kb on + strand, within DVU0111at 144.822 kb on + strand, within DVU0111at 144.829 kb on - strand, within DVU0111at 144.845 kb on - strand, within DVU0111at 144.850 kb on + strand, within DVU0111at 144.872 kb on + strand, within DVU0111at 144.880 kb on - strand, within DVU0111at 144.887 kb on - strand, within DVU0111at 144.939 kb on - strand, within DVU0111at 144.955 kb on + strand, within DVU0111at 144.988 kb on + strandat 144.995 kb on - strandat 145.027 kb on + strandat 145.074 kb on - strandat 145.105 kb on + strandat 145.105 kb on + strandat 145.118 kb on - strandat 145.163 kb on + strandat 145.173 kb on + strandat 145.181 kb on - strandat 145.203 kb on + strand, within phrBat 145.268 kb on + strand, within phrBat 145.270 kb on + strand, within phrBat 145.380 kb on + strand, within phrBat 145.407 kb on + strand, within phrBat 145.441 kb on + strand, within phrBat 145.449 kb on - strand, within phrBat 145.478 kb on + strand, within phrBat 145.533 kb on + strand, within phrBat 145.544 kb on - strand, within phrBat 145.554 kb on - strand, within phrBat 145.573 kb on - strand, within phrBat 145.660 kb on - strand, within phrBat 145.748 kb on + strand, within phrBat 145.862 kb on - strand, within phrBat 145.873 kb on + strand, within phrBat 145.888 kb on - strand, within phrBat 145.982 kb on - strand, within phrBat 145.993 kb on + strand, within phrBat 146.044 kb on - strand, within phrBat 146.056 kb on + strand, within phrBat 146.058 kb on - strand, within phrBat 146.147 kb on - strand, within phrBat 146.156 kb on + strand, within phrBat 146.172 kb on - strand, within phrBat 146.308 kb on + strand, within phrBat 146.314 kb on - strand, within phrBat 146.316 kb on - strand, within phrBat 146.316 kb on - strand, within phrBat 146.338 kb on + strandat 146.346 kb on - strandat 146.362 kb on + strandat 146.362 kb on + strandat 146.364 kb on + strandat 146.372 kb on - strandat 146.387 kb on - strandat 146.506 kb on + strandat 146.542 kb on - strandat 146.547 kb on - strandat 146.563 kb on - strandat 146.575 kb on - strandat 146.612 kb on + strandat 146.627 kb on + strandat 146.627 kb on + strandat 146.652 kb on + strandat 146.660 kb on - strandat 146.704 kb on - strandat 146.704 kb on - strandat 146.708 kb on + strandat 146.739 kb on - strandat 146.796 kb on - strandat 146.881 kb on - strandat 146.882 kb on + strandat 146.883 kb on + strandat 146.912 kb on + strandat 146.912 kb on + strandat 146.912 kb on + strandat 146.920 kb on - strandat 146.939 kb on + strandat 146.939 kb on + strandat 146.947 kb on - strandat 146.948 kb on + strandat 146.956 kb on - strandat 146.971 kb on + strandat 146.971 kb on + strandat 147.098 kb on - strandat 147.215 kb on - strand, within hisIat 147.298 kb on - strand, within hisIat 147.304 kb on + strand, within hisIat 147.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine as nutrient 10mM
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144,101 - -0.4
144,183 + +0.2
144,255 + -1.5
144,263 + -0.8
144,263 + +0.0
144,271 - +0.4
144,273 - -0.8
144,287 + -0.9
144,287 + +0.1
144,300 - +0.1
144,386 + DVU0111 0.19 -0.8
144,497 + DVU0111 0.32 -0.0
144,585 - DVU0111 0.43 +0.7
144,713 + DVU0111 0.59 +0.4
144,723 + DVU0111 0.60 -0.4
144,730 - DVU0111 0.61 -2.1
144,765 + DVU0111 0.66 -0.0
144,822 + DVU0111 0.73 -0.4
144,829 - DVU0111 0.73 -0.3
144,845 - DVU0111 0.75 +0.2
144,850 + DVU0111 0.76 +0.3
144,872 + DVU0111 0.79 -0.1
144,880 - DVU0111 0.80 +0.1
144,887 - DVU0111 0.81 -0.5
144,939 - DVU0111 0.87 +0.3
144,955 + DVU0111 0.89 +0.4
144,988 + -0.2
144,995 - +1.2
145,027 + -1.6
145,074 - +0.9
145,105 + -0.1
145,105 + +0.8
145,118 - -0.7
145,163 + +0.9
145,173 + -0.1
145,181 - -0.3
145,203 + phrB DVU0112 0.11 +0.1
145,268 + phrB DVU0112 0.15 -0.7
145,270 + phrB DVU0112 0.15 -0.2
145,380 + phrB DVU0112 0.23 -0.4
145,407 + phrB DVU0112 0.25 -0.5
145,441 + phrB DVU0112 0.27 +2.2
145,449 - phrB DVU0112 0.28 -1.7
145,478 + phrB DVU0112 0.30 -1.7
145,533 + phrB DVU0112 0.34 -0.6
145,544 - phrB DVU0112 0.35 -1.8
145,554 - phrB DVU0112 0.35 -0.3
145,573 - phrB DVU0112 0.37 -2.2
145,660 - phrB DVU0112 0.43 -0.5
145,748 + phrB DVU0112 0.49 -0.8
145,862 - phrB DVU0112 0.57 +0.0
145,873 + phrB DVU0112 0.58 -1.4
145,888 - phrB DVU0112 0.59 -1.6
145,982 - phrB DVU0112 0.65 -0.9
145,993 + phrB DVU0112 0.66 -1.0
146,044 - phrB DVU0112 0.70 -0.8
146,056 + phrB DVU0112 0.71 +0.2
146,058 - phrB DVU0112 0.71 -0.2
146,147 - phrB DVU0112 0.77 +0.6
146,156 + phrB DVU0112 0.78 -1.7
146,172 - phrB DVU0112 0.79 +0.4
146,308 + phrB DVU0112 0.88 -0.8
146,314 - phrB DVU0112 0.89 +0.5
146,316 - phrB DVU0112 0.89 -1.0
146,316 - phrB DVU0112 0.89 +0.4
146,338 + -0.5
146,346 - +0.3
146,362 + +0.4
146,362 + +0.2
146,364 + -1.3
146,372 - +0.1
146,387 - -0.7
146,506 + -1.2
146,542 - +0.1
146,547 - -1.4
146,563 - -1.2
146,575 - +0.2
146,612 + -1.9
146,627 + -0.7
146,627 + -0.6
146,652 + -0.8
146,660 - +1.6
146,704 - -0.3
146,704 - +0.5
146,708 + +0.2
146,739 - +0.2
146,796 - +0.3
146,881 - -0.9
146,882 + +0.0
146,883 + +0.4
146,912 + -1.2
146,912 + -1.5
146,912 + -0.4
146,920 - +0.5
146,939 + -0.3
146,939 + -0.4
146,947 - -0.4
146,948 + -0.2
146,956 - -0.3
146,971 + -0.9
146,971 + +0.2
147,098 - -1.8
147,215 - hisI DVU0113 0.26 -3.4
147,298 - hisI DVU0113 0.48 -5.7
147,304 + hisI DVU0113 0.49 -1.2
147,468 - -0.8

Or see this region's nucleotide sequence