Experiment: MoLS4 with L-Leucine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2194 and DVU2195 overlap by 8 nucleotides DVU2195 and DVU2196 are separated by 49 nucleotides DVU2196 and DVU2197 are separated by 0 nucleotides DVU2197 and DVU2198 are separated by 524 nucleotides
DVU2194: DVU2194 - hypothetical protein (TIGR), at 2,291,229 to 2,291,918
DVU2194
DVU2195: DVU2195 - hypothetical protein (TIGR), at 2,291,911 to 2,292,168
DVU2195
DVU2196: DVU2196 - hypothetical protein (TIGR), at 2,292,218 to 2,292,763
DVU2196
DVU2197: DVU2197 - site-specific recombinase, phage integrase family (TIGR), at 2,292,764 to 2,293,693
DVU2197
DVU2198: DVU2198 - hypothetical protein (TIGR), at 2,294,218 to 2,294,415
DVU2198
Position (kb)
2292
2293
2294 Strain fitness (log2 ratio)
-2
-1
0
1 at 2291.764 kb on - strand, within DVU2194 at 2291.809 kb on + strand, within DVU2194 at 2291.824 kb on + strand, within DVU2194 at 2291.958 kb on + strand, within DVU2195 at 2291.970 kb on + strand, within DVU2195 at 2291.987 kb on - strand, within DVU2195 at 2292.004 kb on + strand, within DVU2195 at 2292.012 kb on - strand, within DVU2195 at 2292.031 kb on - strand, within DVU2195 at 2292.049 kb on + strand, within DVU2195 at 2292.049 kb on + strand, within DVU2195 at 2292.049 kb on + strand, within DVU2195 at 2292.049 kb on + strand, within DVU2195 at 2292.050 kb on - strand, within DVU2195 at 2292.057 kb on - strand, within DVU2195 at 2292.057 kb on - strand, within DVU2195 at 2292.057 kb on - strand, within DVU2195 at 2292.057 kb on - strand, within DVU2195 at 2292.057 kb on - strand, within DVU2195 at 2292.081 kb on + strand, within DVU2195 at 2292.096 kb on - strand, within DVU2195 at 2292.128 kb on - strand, within DVU2195 at 2292.234 kb on + strand at 2292.317 kb on + strand, within DVU2196 at 2292.317 kb on + strand, within DVU2196 at 2292.362 kb on - strand, within DVU2196 at 2292.371 kb on + strand, within DVU2196 at 2292.387 kb on + strand, within DVU2196 at 2292.413 kb on + strand, within DVU2196 at 2292.418 kb on + strand, within DVU2196 at 2292.419 kb on + strand, within DVU2196 at 2292.502 kb on + strand, within DVU2196 at 2292.587 kb on - strand, within DVU2196 at 2292.642 kb on - strand, within DVU2196 at 2292.699 kb on - strand, within DVU2196 at 2292.699 kb on - strand, within DVU2196 at 2292.708 kb on - strand, within DVU2196 at 2292.724 kb on + strand at 2292.724 kb on + strand at 2292.792 kb on + strand at 2292.870 kb on + strand, within DVU2197 at 2292.870 kb on + strand, within DVU2197 at 2292.927 kb on + strand, within DVU2197 at 2292.939 kb on + strand, within DVU2197 at 2292.939 kb on + strand, within DVU2197 at 2292.939 kb on + strand, within DVU2197 at 2293.149 kb on + strand, within DVU2197 at 2293.157 kb on - strand, within DVU2197 at 2293.157 kb on - strand, within DVU2197 at 2293.157 kb on - strand, within DVU2197 at 2293.175 kb on - strand, within DVU2197 at 2293.233 kb on - strand, within DVU2197 at 2293.238 kb on - strand, within DVU2197 at 2293.265 kb on + strand, within DVU2197 at 2293.365 kb on - strand, within DVU2197 at 2293.394 kb on - strand, within DVU2197 at 2293.408 kb on + strand, within DVU2197 at 2293.425 kb on - strand, within DVU2197 at 2293.426 kb on + strand, within DVU2197 at 2293.440 kb on + strand, within DVU2197 at 2293.485 kb on + strand, within DVU2197 at 2293.485 kb on + strand, within DVU2197 at 2293.485 kb on + strand, within DVU2197 at 2293.493 kb on - strand, within DVU2197 at 2293.554 kb on + strand, within DVU2197 at 2293.562 kb on - strand, within DVU2197 at 2293.595 kb on - strand, within DVU2197 at 2293.661 kb on + strand at 2293.689 kb on - strand at 2293.697 kb on - strand at 2293.771 kb on - strand at 2293.773 kb on - strand at 2293.778 kb on - strand at 2293.835 kb on - strand at 2294.158 kb on + strand at 2294.206 kb on - strand at 2294.237 kb on - strand at 2294.344 kb on + strand, within DVU2198
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine as nutrient 10mM remove 2,291,764 - DVU2194 0.78 -0.4 2,291,809 + DVU2194 0.84 -0.6 2,291,824 + DVU2194 0.86 +0.7 2,291,958 + DVU2195 0.18 +0.2 2,291,970 + DVU2195 0.23 +0.4 2,291,987 - DVU2195 0.29 +0.5 2,292,004 + DVU2195 0.36 -0.8 2,292,012 - DVU2195 0.39 -1.7 2,292,031 - DVU2195 0.47 -0.7 2,292,049 + DVU2195 0.53 -0.6 2,292,049 + DVU2195 0.53 -0.0 2,292,049 + DVU2195 0.53 +0.8 2,292,049 + DVU2195 0.53 -0.6 2,292,050 - DVU2195 0.54 +0.1 2,292,057 - DVU2195 0.57 +0.7 2,292,057 - DVU2195 0.57 -1.1 2,292,057 - DVU2195 0.57 +0.2 2,292,057 - DVU2195 0.57 -0.6 2,292,057 - DVU2195 0.57 -0.9 2,292,081 + DVU2195 0.66 -1.7 2,292,096 - DVU2195 0.72 +0.4 2,292,128 - DVU2195 0.84 +0.6 2,292,234 + -0.6 2,292,317 + DVU2196 0.18 -1.7 2,292,317 + DVU2196 0.18 +0.3 2,292,362 - DVU2196 0.26 -0.3 2,292,371 + DVU2196 0.28 +0.1 2,292,387 + DVU2196 0.31 +0.1 2,292,413 + DVU2196 0.36 +1.1 2,292,418 + DVU2196 0.37 -1.5 2,292,419 + DVU2196 0.37 -2.2 2,292,502 + DVU2196 0.52 -0.0 2,292,587 - DVU2196 0.68 -2.0 2,292,642 - DVU2196 0.78 +0.1 2,292,699 - DVU2196 0.88 +0.7 2,292,699 - DVU2196 0.88 +0.2 2,292,708 - DVU2196 0.90 -1.2 2,292,724 + -2.6 2,292,724 + -1.2 2,292,792 + +0.0 2,292,870 + DVU2197 0.11 -0.5 2,292,870 + DVU2197 0.11 -0.3 2,292,927 + DVU2197 0.18 +0.3 2,292,939 + DVU2197 0.19 +1.0 2,292,939 + DVU2197 0.19 -0.2 2,292,939 + DVU2197 0.19 +0.2 2,293,149 + DVU2197 0.41 +0.3 2,293,157 - DVU2197 0.42 +0.1 2,293,157 - DVU2197 0.42 -0.2 2,293,157 - DVU2197 0.42 -0.6 2,293,175 - DVU2197 0.44 -0.6 2,293,233 - DVU2197 0.50 -0.7 2,293,238 - DVU2197 0.51 +0.1 2,293,265 + DVU2197 0.54 -0.5 2,293,365 - DVU2197 0.65 -0.7 2,293,394 - DVU2197 0.68 +0.0 2,293,408 + DVU2197 0.69 +1.6 2,293,425 - DVU2197 0.71 +0.2 2,293,426 + DVU2197 0.71 -0.5 2,293,440 + DVU2197 0.73 -0.9 2,293,485 + DVU2197 0.78 -0.8 2,293,485 + DVU2197 0.78 +0.2 2,293,485 + DVU2197 0.78 +1.7 2,293,493 - DVU2197 0.78 +0.0 2,293,554 + DVU2197 0.85 -0.7 2,293,562 - DVU2197 0.86 -1.1 2,293,595 - DVU2197 0.89 +0.1 2,293,661 + -0.9 2,293,689 - -0.7 2,293,697 - -0.2 2,293,771 - -0.5 2,293,773 - -0.2 2,293,778 - -0.2 2,293,835 - -0.0 2,294,158 + +0.2 2,294,206 - +0.1 2,294,237 - +0.1 2,294,344 + DVU2198 0.64 -0.6
Or see this region's nucleotide sequence