Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2151

Experiment: MoLS4 with L-Leucine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttRNA-Gly and tRNA-Cys are separated by 11 nucleotidestRNA-Cys and tRNA-Gly are separated by 7 nucleotidestRNA-Gly and tRNA-Gly are separated by 32 nucleotidestRNA-Gly and DVU2151 are separated by 93 nucleotidesDVU2151 and DVU2152 are separated by 9 nucleotides DVU_tRNA-Gly-1: tRNA-Gly - tRNA with anticodon GCC for Gly (VIMSS-AUTO), at 2,250,385 to 2,250,459 tRNA-Gly DVU_tRNA-Cys-1: tRNA-Cys - tRNA with anticodon GCA for Cys (VIMSS-AUTO), at 2,250,471 to 2,250,545 tRNA-Cys DVU_tRNA-Gly-2: tRNA-Gly - tRNA with anticodon GCC for Gly (VIMSS-AUTO), at 2,250,553 to 2,250,627 tRNA-Gly DVU_tRNA-Gly-3: tRNA-Gly - tRNA with anticodon CCC for Gly (VIMSS-AUTO), at 2,250,660 to 2,250,734 tRNA-Gly DVU2151: DVU2151 - conserved hypothetical protein (TIGR), at 2,250,828 to 2,251,187 DVU2151 DVU2152: DVU2152 - hypothetical protein (TIGR), at 2,251,197 to 2,252,213 DVU2152 Position (kb) 2250 2251 2252Strain fitness (log2 ratio) -2 -1 0 1 2at 2249.863 kb on + strandat 2249.871 kb on - strandat 2249.871 kb on - strandat 2249.898 kb on + strandat 2249.903 kb on + strandat 2250.167 kb on + strandat 2250.188 kb on + strandat 2250.234 kb on - strandat 2250.834 kb on - strandat 2250.843 kb on - strandat 2250.863 kb on + strandat 2250.865 kb on + strand, within DVU2151at 2250.873 kb on - strand, within DVU2151at 2250.873 kb on - strand, within DVU2151at 2250.892 kb on + strand, within DVU2151at 2251.016 kb on + strand, within DVU2151at 2251.035 kb on - strand, within DVU2151at 2251.063 kb on - strand, within DVU2151at 2251.081 kb on - strand, within DVU2151at 2251.088 kb on + strand, within DVU2151at 2251.088 kb on + strand, within DVU2151at 2251.096 kb on - strand, within DVU2151at 2251.106 kb on - strand, within DVU2151at 2251.106 kb on - strand, within DVU2151at 2251.136 kb on - strand, within DVU2151at 2251.160 kb on + strandat 2251.192 kb on - strandat 2251.482 kb on + strand, within DVU2152at 2251.539 kb on + strand, within DVU2152at 2251.648 kb on - strand, within DVU2152at 2251.668 kb on - strand, within DVU2152at 2251.675 kb on + strand, within DVU2152at 2251.683 kb on - strand, within DVU2152at 2251.838 kb on + strand, within DVU2152at 2251.838 kb on + strand, within DVU2152at 2251.846 kb on - strand, within DVU2152at 2251.852 kb on + strand, within DVU2152at 2251.886 kb on - strand, within DVU2152at 2251.901 kb on + strand, within DVU2152at 2251.903 kb on + strand, within DVU2152at 2251.909 kb on - strand, within DVU2152at 2252.106 kb on + strand, within DVU2152at 2252.176 kb on + strandat 2252.181 kb on + strandat 2252.181 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine as nutrient 10mM
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2,249,863 + -0.2
2,249,871 - +0.1
2,249,871 - -0.7
2,249,898 + -0.2
2,249,903 + +0.4
2,250,167 + +0.7
2,250,188 + +0.3
2,250,234 - -1.4
2,250,834 - -0.8
2,250,843 - +1.3
2,250,863 + -1.0
2,250,865 + DVU2151 0.10 -0.9
2,250,873 - DVU2151 0.12 -2.0
2,250,873 - DVU2151 0.12 -0.8
2,250,892 + DVU2151 0.18 -1.9
2,251,016 + DVU2151 0.52 -0.3
2,251,035 - DVU2151 0.57 -0.3
2,251,063 - DVU2151 0.65 -1.8
2,251,081 - DVU2151 0.70 +0.2
2,251,088 + DVU2151 0.72 -1.1
2,251,088 + DVU2151 0.72 +2.3
2,251,096 - DVU2151 0.74 +0.2
2,251,106 - DVU2151 0.77 -1.6
2,251,106 - DVU2151 0.77 +0.0
2,251,136 - DVU2151 0.86 -0.8
2,251,160 + -0.7
2,251,192 - +0.0
2,251,482 + DVU2152 0.28 +0.2
2,251,539 + DVU2152 0.34 -0.3
2,251,648 - DVU2152 0.44 -0.0
2,251,668 - DVU2152 0.46 +0.7
2,251,675 + DVU2152 0.47 -0.4
2,251,683 - DVU2152 0.48 +0.1
2,251,838 + DVU2152 0.63 +0.7
2,251,838 + DVU2152 0.63 +1.0
2,251,846 - DVU2152 0.64 -1.0
2,251,852 + DVU2152 0.64 +0.5
2,251,886 - DVU2152 0.68 -0.4
2,251,901 + DVU2152 0.69 -1.8
2,251,903 + DVU2152 0.69 +0.2
2,251,909 - DVU2152 0.70 -0.1
2,252,106 + DVU2152 0.89 +0.4
2,252,176 + -1.3
2,252,181 + -1.8
2,252,181 + +0.0

Or see this region's nucleotide sequence