Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF41366

Experiment: MoLS4 with L-Leucine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2391 and DVU2392 are separated by 184 nucleotidesDVU2392 and DORF41366 are separated by 112 nucleotidesDORF41366 and ntrC1 are separated by 246 nucleotides DVU2391: DVU2391 - hypothetical protein (TIGR), at 2,493,730 to 2,493,873 DVU2391 DVU2392: DVU2392 - type III secretion chaperone, CesT family (TIGR), at 2,494,058 to 2,494,510 DVU2392 DORF41366: DORF41366 - SEED: FIG00607184: hypothetical protein, at 2,494,623 to 2,496,719 DORF41366 DVU2394: ntrC1 - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 2,496,966 to 2,498,357 ntrC1 Position (kb) 2494 2495 2496 2497Strain fitness (log2 ratio) -2 -1 0 1 2at 2493.675 kb on + strandat 2493.832 kb on - strand, within DVU2391at 2493.963 kb on + strandat 2493.983 kb on - strandat 2494.051 kb on - strandat 2494.170 kb on + strand, within DVU2392at 2494.179 kb on - strand, within DVU2392at 2494.199 kb on + strand, within DVU2392at 2494.201 kb on - strand, within DVU2392at 2494.214 kb on - strand, within DVU2392at 2494.289 kb on - strand, within DVU2392at 2494.392 kb on - strand, within DVU2392at 2494.444 kb on + strand, within DVU2392at 2494.444 kb on + strand, within DVU2392at 2494.452 kb on - strand, within DVU2392at 2494.486 kb on - strandat 2494.554 kb on - strandat 2494.554 kb on - strandat 2494.642 kb on + strandat 2494.643 kb on + strandat 2494.650 kb on - strandat 2494.787 kb on + strandat 2494.792 kb on + strandat 2494.811 kb on + strandat 2494.860 kb on - strand, within DORF41366at 2494.870 kb on + strand, within DORF41366at 2494.871 kb on - strand, within DORF41366at 2494.883 kb on + strand, within DORF41366at 2494.949 kb on - strand, within DORF41366at 2494.957 kb on + strand, within DORF41366at 2495.076 kb on + strand, within DORF41366at 2495.089 kb on - strand, within DORF41366at 2495.188 kb on - strand, within DORF41366at 2495.212 kb on + strand, within DORF41366at 2495.304 kb on - strand, within DORF41366at 2495.309 kb on - strand, within DORF41366at 2495.314 kb on - strand, within DORF41366at 2495.314 kb on - strand, within DORF41366at 2495.319 kb on - strand, within DORF41366at 2495.329 kb on - strand, within DORF41366at 2495.329 kb on - strand, within DORF41366at 2495.383 kb on - strand, within DORF41366at 2495.395 kb on - strand, within DORF41366at 2495.475 kb on - strand, within DORF41366at 2495.555 kb on + strand, within DORF41366at 2495.575 kb on + strand, within DORF41366at 2495.583 kb on - strand, within DORF41366at 2495.588 kb on - strand, within DORF41366at 2495.595 kb on - strand, within DORF41366at 2495.600 kb on + strand, within DORF41366at 2495.699 kb on - strand, within DORF41366at 2495.721 kb on + strand, within DORF41366at 2495.733 kb on + strand, within DORF41366at 2495.765 kb on + strand, within DORF41366at 2495.864 kb on + strand, within DORF41366at 2495.864 kb on + strand, within DORF41366at 2495.878 kb on + strand, within DORF41366at 2496.041 kb on + strand, within DORF41366at 2496.049 kb on - strand, within DORF41366at 2496.056 kb on + strand, within DORF41366at 2496.090 kb on - strand, within DORF41366at 2496.126 kb on + strand, within DORF41366at 2496.201 kb on - strand, within DORF41366at 2496.468 kb on - strand, within DORF41366at 2496.550 kb on + strandat 2496.584 kb on - strandat 2496.596 kb on + strandat 2496.642 kb on + strandat 2496.642 kb on + strandat 2496.650 kb on - strandat 2496.698 kb on - strandat 2496.757 kb on + strandat 2496.786 kb on - strandat 2496.786 kb on - strandat 2496.822 kb on + strandat 2496.910 kb on - strandat 2497.077 kb on + strandat 2497.143 kb on + strand, within ntrC1at 2497.319 kb on - strand, within ntrC1at 2497.414 kb on - strand, within ntrC1at 2497.449 kb on + strand, within ntrC1at 2497.449 kb on + strand, within ntrC1at 2497.457 kb on - strand, within ntrC1at 2497.594 kb on - strand, within ntrC1at 2497.658 kb on + strand, within ntrC1

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine as nutrient 10mM
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2,493,675 + -0.9
2,493,832 - DVU2391 0.71 +0.2
2,493,963 + -0.3
2,493,983 - -1.2
2,494,051 - +1.5
2,494,170 + DVU2392 0.25 +0.9
2,494,179 - DVU2392 0.27 -0.1
2,494,199 + DVU2392 0.31 -0.2
2,494,201 - DVU2392 0.32 +0.0
2,494,214 - DVU2392 0.34 +0.1
2,494,289 - DVU2392 0.51 +1.0
2,494,392 - DVU2392 0.74 -0.3
2,494,444 + DVU2392 0.85 +0.3
2,494,444 + DVU2392 0.85 -1.6
2,494,452 - DVU2392 0.87 -1.4
2,494,486 - +0.5
2,494,554 - +1.0
2,494,554 - -1.4
2,494,642 + +1.5
2,494,643 + +0.5
2,494,650 - +0.1
2,494,787 + -0.2
2,494,792 + -0.4
2,494,811 + -1.2
2,494,860 - DORF41366 0.11 -0.5
2,494,870 + DORF41366 0.12 -0.4
2,494,871 - DORF41366 0.12 -2.2
2,494,883 + DORF41366 0.12 -1.7
2,494,949 - DORF41366 0.16 -0.4
2,494,957 + DORF41366 0.16 +0.3
2,495,076 + DORF41366 0.22 -0.4
2,495,089 - DORF41366 0.22 -0.6
2,495,188 - DORF41366 0.27 -0.0
2,495,212 + DORF41366 0.28 +0.1
2,495,304 - DORF41366 0.32 -0.6
2,495,309 - DORF41366 0.33 +0.2
2,495,314 - DORF41366 0.33 -0.5
2,495,314 - DORF41366 0.33 -0.9
2,495,319 - DORF41366 0.33 +2.0
2,495,329 - DORF41366 0.34 -1.6
2,495,329 - DORF41366 0.34 -0.4
2,495,383 - DORF41366 0.36 +0.1
2,495,395 - DORF41366 0.37 -1.9
2,495,475 - DORF41366 0.41 -0.7
2,495,555 + DORF41366 0.44 -0.4
2,495,575 + DORF41366 0.45 -0.7
2,495,583 - DORF41366 0.46 -0.3
2,495,588 - DORF41366 0.46 -1.8
2,495,595 - DORF41366 0.46 -0.8
2,495,600 + DORF41366 0.47 +0.5
2,495,699 - DORF41366 0.51 -1.0
2,495,721 + DORF41366 0.52 -0.8
2,495,733 + DORF41366 0.53 +0.0
2,495,765 + DORF41366 0.54 +0.1
2,495,864 + DORF41366 0.59 -1.7
2,495,864 + DORF41366 0.59 +0.1
2,495,878 + DORF41366 0.60 -1.2
2,496,041 + DORF41366 0.68 -0.4
2,496,049 - DORF41366 0.68 +0.1
2,496,056 + DORF41366 0.68 +0.7
2,496,090 - DORF41366 0.70 +0.7
2,496,126 + DORF41366 0.72 +0.4
2,496,201 - DORF41366 0.75 +0.5
2,496,468 - DORF41366 0.88 +1.4
2,496,550 + +0.1
2,496,584 - -0.8
2,496,596 + +0.3
2,496,642 + -0.2
2,496,642 + -0.5
2,496,650 - -2.0
2,496,698 - -0.9
2,496,757 + -0.2
2,496,786 - -0.1
2,496,786 - +0.1
2,496,822 + -2.4
2,496,910 - -2.4
2,497,077 + -1.1
2,497,143 + ntrC1 DVU2394 0.13 -1.5
2,497,319 - ntrC1 DVU2394 0.25 -0.1
2,497,414 - ntrC1 DVU2394 0.32 +0.2
2,497,449 + ntrC1 DVU2394 0.35 +0.3
2,497,449 + ntrC1 DVU2394 0.35 +0.4
2,497,457 - ntrC1 DVU2394 0.35 +0.5
2,497,594 - ntrC1 DVU2394 0.45 -1.8
2,497,658 + ntrC1 DVU2394 0.50 -1.9

Or see this region's nucleotide sequence