Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21505

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21503 and SM_b21504 are separated by 10 nucleotidesSM_b21504 and SM_b21505 overlap by 8 nucleotidesSM_b21505 and SM_b21506 are separated by 12 nucleotides SM_b21503: SM_b21503 - glycosyltransferase, at 1,427,874 to 1,429,217 _b21503 SM_b21504: SM_b21504 - hypothetical protein, at 1,429,228 to 1,429,983 _b21504 SM_b21505: SM_b21505 - membrane protein, Wzy-like polysaccharide polymerase ExoQ, at 1,429,976 to 1,431,307 _b21505 SM_b21506: SM_b21506 - cell surface polysaccharides export protein, at 1,431,320 to 1,432,936 _b21506 Position (kb) 1429 1430 1431 1432Strain fitness (log2 ratio) -2 -1 0 1at 1429.034 kb on - strand, within SM_b21503at 1429.034 kb on - strand, within SM_b21503at 1429.139 kb on + strandat 1429.139 kb on + strandat 1429.139 kb on + strandat 1429.140 kb on - strandat 1429.183 kb on + strandat 1429.183 kb on + strandat 1429.183 kb on + strandat 1429.184 kb on - strandat 1429.229 kb on + strandat 1429.292 kb on + strandat 1429.293 kb on - strandat 1429.331 kb on + strand, within SM_b21504at 1429.332 kb on - strand, within SM_b21504at 1429.332 kb on - strand, within SM_b21504at 1429.566 kb on - strand, within SM_b21504at 1429.784 kb on - strand, within SM_b21504at 1429.784 kb on - strand, within SM_b21504at 1429.784 kb on - strand, within SM_b21504at 1429.785 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.808 kb on + strand, within SM_b21504at 1429.808 kb on + strand, within SM_b21504at 1429.809 kb on - strand, within SM_b21504at 1429.809 kb on - strand, within SM_b21504at 1429.809 kb on - strand, within SM_b21504at 1429.988 kb on + strandat 1430.055 kb on + strandat 1430.056 kb on - strandat 1430.056 kb on - strandat 1430.137 kb on - strand, within SM_b21505at 1430.145 kb on - strand, within SM_b21505at 1430.150 kb on + strand, within SM_b21505at 1430.151 kb on - strand, within SM_b21505at 1430.341 kb on - strand, within SM_b21505at 1430.380 kb on - strand, within SM_b21505at 1430.380 kb on - strand, within SM_b21505at 1430.706 kb on + strand, within SM_b21505at 1430.707 kb on - strand, within SM_b21505at 1430.707 kb on - strand, within SM_b21505at 1430.850 kb on + strand, within SM_b21505at 1430.851 kb on - strand, within SM_b21505at 1430.853 kb on + strand, within SM_b21505at 1430.854 kb on - strand, within SM_b21505at 1430.931 kb on + strand, within SM_b21505at 1430.932 kb on - strand, within SM_b21505at 1430.932 kb on - strand, within SM_b21505at 1431.434 kb on - strandat 1431.550 kb on - strand, within SM_b21506at 1431.793 kb on - strand, within SM_b21506at 1431.793 kb on - strand, within SM_b21506at 1431.796 kb on + strand, within SM_b21506at 1431.796 kb on + strand, within SM_b21506at 1431.832 kb on + strand, within SM_b21506at 1431.834 kb on + strand, within SM_b21506at 1431.834 kb on + strand, within SM_b21506at 1431.835 kb on - strand, within SM_b21506at 1431.835 kb on - strand, within SM_b21506at 1432.295 kb on + strand, within SM_b21506at 1432.295 kb on + strand, within SM_b21506

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
1,429,034 - SM_b21503 0.86 +0.3
1,429,034 - SM_b21503 0.86 +0.0
1,429,139 + -1.4
1,429,139 + +0.3
1,429,139 + +0.2
1,429,140 - -0.2
1,429,183 + +0.1
1,429,183 + +0.1
1,429,183 + -0.2
1,429,184 - +1.6
1,429,229 + -0.5
1,429,292 + -0.6
1,429,293 - +0.0
1,429,331 + SM_b21504 0.14 +1.2
1,429,332 - SM_b21504 0.14 -0.7
1,429,332 - SM_b21504 0.14 +0.0
1,429,566 - SM_b21504 0.45 +0.4
1,429,784 - SM_b21504 0.74 +0.1
1,429,784 - SM_b21504 0.74 -0.0
1,429,784 - SM_b21504 0.74 -1.1
1,429,785 + SM_b21504 0.74 -0.2
1,429,787 + SM_b21504 0.74 +0.1
1,429,787 + SM_b21504 0.74 -0.7
1,429,787 + SM_b21504 0.74 -0.7
1,429,787 + SM_b21504 0.74 +0.0
1,429,787 + SM_b21504 0.74 -0.9
1,429,788 - SM_b21504 0.74 -1.0
1,429,788 - SM_b21504 0.74 -0.1
1,429,788 - SM_b21504 0.74 -0.4
1,429,788 - SM_b21504 0.74 -0.0
1,429,788 - SM_b21504 0.74 +0.0
1,429,788 - SM_b21504 0.74 +0.0
1,429,808 + SM_b21504 0.77 -0.5
1,429,808 + SM_b21504 0.77 -0.3
1,429,809 - SM_b21504 0.77 +0.1
1,429,809 - SM_b21504 0.77 +0.2
1,429,809 - SM_b21504 0.77 +0.0
1,429,988 + +1.6
1,430,055 + -0.4
1,430,056 - -0.6
1,430,056 - -0.7
1,430,137 - SM_b21505 0.12 -0.5
1,430,145 - SM_b21505 0.13 -0.9
1,430,150 + SM_b21505 0.13 -0.9
1,430,151 - SM_b21505 0.13 -0.3
1,430,341 - SM_b21505 0.27 +0.9
1,430,380 - SM_b21505 0.30 -0.5
1,430,380 - SM_b21505 0.30 -0.3
1,430,706 + SM_b21505 0.55 -0.5
1,430,707 - SM_b21505 0.55 -0.2
1,430,707 - SM_b21505 0.55 -0.1
1,430,850 + SM_b21505 0.66 -0.7
1,430,851 - SM_b21505 0.66 +0.6
1,430,853 + SM_b21505 0.66 -0.5
1,430,854 - SM_b21505 0.66 +1.6
1,430,931 + SM_b21505 0.72 -0.1
1,430,932 - SM_b21505 0.72 +0.4
1,430,932 - SM_b21505 0.72 -1.3
1,431,434 - -1.0
1,431,550 - SM_b21506 0.14 -0.0
1,431,793 - SM_b21506 0.29 -0.4
1,431,793 - SM_b21506 0.29 +0.4
1,431,796 + SM_b21506 0.29 +1.6
1,431,796 + SM_b21506 0.29 +1.0
1,431,832 + SM_b21506 0.32 +0.5
1,431,834 + SM_b21506 0.32 +0.2
1,431,834 + SM_b21506 0.32 -0.6
1,431,835 - SM_b21506 0.32 -1.9
1,431,835 - SM_b21506 0.32 -0.7
1,432,295 + SM_b21506 0.60 +0.4
1,432,295 + SM_b21506 0.60 -0.1

Or see this region's nucleotide sequence