Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20608

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20606 and SM_b20607 overlap by 4 nucleotidesSM_b20607 and SM_b20608 are separated by 32 nucleotidesSM_b20608 and SM_b20609 are separated by 306 nucleotides SM_b20606: SM_b20606 - hypothetical protein, at 1,620,580 to 1,621,029 _b20606 SM_b20607: SM_b20607 - hypothetical protein, at 1,621,026 to 1,621,490 _b20607 SM_b20608: SM_b20608 - ArsR family transcriptional regulator, at 1,621,523 to 1,621,861 _b20608 SM_b20609: SM_b20609 - two-component sensor histidine kinase, at 1,622,168 to 1,625,548 _b20609 Position (kb) 1621 1622Strain fitness (log2 ratio) -2 -1 0 1at 1620.588 kb on - strandat 1620.639 kb on - strand, within SM_b20606at 1621.016 kb on + strandat 1621.016 kb on + strandat 1621.057 kb on + strandat 1621.058 kb on - strandat 1621.059 kb on - strandat 1621.262 kb on - strand, within SM_b20607at 1621.262 kb on - strand, within SM_b20607at 1621.279 kb on + strand, within SM_b20607at 1621.280 kb on - strand, within SM_b20607at 1621.280 kb on - strand, within SM_b20607at 1621.454 kb on + strandat 1621.454 kb on + strandat 1621.455 kb on - strandat 1621.455 kb on - strandat 1621.566 kb on + strand, within SM_b20608at 1621.566 kb on + strand, within SM_b20608at 1621.566 kb on + strand, within SM_b20608at 1621.566 kb on + strand, within SM_b20608at 1621.567 kb on - strand, within SM_b20608at 1621.567 kb on - strand, within SM_b20608at 1621.608 kb on + strand, within SM_b20608at 1621.713 kb on - strand, within SM_b20608at 1622.115 kb on + strandat 1622.115 kb on + strandat 1622.207 kb on + strandat 1622.208 kb on - strandat 1622.208 kb on - strandat 1622.209 kb on + strandat 1622.210 kb on - strandat 1622.243 kb on + strandat 1622.244 kb on - strandat 1622.356 kb on + strandat 1622.356 kb on + strandat 1622.356 kb on + strandat 1622.357 kb on - strandat 1622.367 kb on - strandat 1622.444 kb on + strandat 1622.532 kb on - strand, within SM_b20609at 1622.532 kb on - strand, within SM_b20609at 1622.608 kb on - strand, within SM_b20609at 1622.608 kb on - strand, within SM_b20609at 1622.787 kb on - strand, within SM_b20609

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,620,588 - +0.1
1,620,639 - SM_b20606 0.13 -0.2
1,621,016 + +0.2
1,621,016 + +1.1
1,621,057 + +0.8
1,621,058 - -0.2
1,621,059 - -0.1
1,621,262 - SM_b20607 0.51 -0.6
1,621,262 - SM_b20607 0.51 -0.3
1,621,279 + SM_b20607 0.54 +0.4
1,621,280 - SM_b20607 0.55 -1.0
1,621,280 - SM_b20607 0.55 -0.8
1,621,454 + -0.4
1,621,454 + -0.2
1,621,455 - -0.2
1,621,455 - -0.8
1,621,566 + SM_b20608 0.13 -1.0
1,621,566 + SM_b20608 0.13 -0.5
1,621,566 + SM_b20608 0.13 -0.8
1,621,566 + SM_b20608 0.13 -0.1
1,621,567 - SM_b20608 0.13 +0.1
1,621,567 - SM_b20608 0.13 +1.4
1,621,608 + SM_b20608 0.25 +0.3
1,621,713 - SM_b20608 0.56 -0.9
1,622,115 + -0.9
1,622,115 + -0.4
1,622,207 + -0.5
1,622,208 - -0.3
1,622,208 - +0.1
1,622,209 + -0.5
1,622,210 - +0.1
1,622,243 + -1.9
1,622,244 - -0.6
1,622,356 + +0.4
1,622,356 + -0.1
1,622,356 + +0.3
1,622,357 - -0.2
1,622,367 - +0.4
1,622,444 + -0.0
1,622,532 - SM_b20609 0.11 -0.3
1,622,532 - SM_b20609 0.11 +0.3
1,622,608 - SM_b20609 0.13 +0.8
1,622,608 - SM_b20609 0.13 +1.7
1,622,787 - SM_b20609 0.18 -0.8

Or see this region's nucleotide sequence