Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20072

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20071 and SM_b20072 are separated by 471 nucleotidesSM_b20072 and SM_b20073 are separated by 162 nucleotides SM_b20071: SM_b20071 - efflux protein, at 79,574 to 80,767 _b20071 SM_b20072: SM_b20072 - rhizopine binding protein, at 81,239 to 82,168 _b20072 SM_b20073: SM_b20073 - oxidoreductase, at 82,331 to 83,188 _b20073 Position (kb) 81 82 83Strain fitness (log2 ratio) -1 0 1at 80.322 kb on + strand, within SM_b20071at 80.322 kb on + strand, within SM_b20071at 80.322 kb on + strand, within SM_b20071at 80.322 kb on + strand, within SM_b20071at 80.323 kb on - strand, within SM_b20071at 80.323 kb on - strand, within SM_b20071at 80.323 kb on - strand, within SM_b20071at 80.628 kb on + strand, within SM_b20071at 80.629 kb on - strand, within SM_b20071at 80.629 kb on - strand, within SM_b20071at 80.731 kb on - strandat 80.754 kb on - strandat 80.848 kb on + strandat 81.217 kb on - strandat 81.392 kb on + strand, within SM_b20072at 81.392 kb on + strand, within SM_b20072at 81.393 kb on - strand, within SM_b20072at 81.721 kb on - strand, within SM_b20072at 81.853 kb on - strand, within SM_b20072at 81.853 kb on - strand, within SM_b20072at 82.157 kb on + strandat 82.157 kb on + strandat 82.158 kb on - strandat 82.158 kb on - strandat 82.172 kb on + strandat 82.278 kb on + strandat 82.279 kb on - strandat 82.279 kb on - strandat 82.281 kb on - strandat 82.380 kb on + strandat 82.381 kb on - strandat 82.381 kb on - strandat 82.381 kb on - strandat 82.450 kb on + strand, within SM_b20073at 82.450 kb on + strand, within SM_b20073at 82.451 kb on - strand, within SM_b20073at 82.547 kb on + strand, within SM_b20073at 82.548 kb on - strand, within SM_b20073at 82.617 kb on + strand, within SM_b20073at 82.618 kb on - strand, within SM_b20073at 82.716 kb on + strand, within SM_b20073at 82.716 kb on + strand, within SM_b20073at 82.971 kb on + strand, within SM_b20073at 82.971 kb on + strand, within SM_b20073at 82.978 kb on + strand, within SM_b20073at 82.978 kb on + strand, within SM_b20073

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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80,322 + SM_b20071 0.63 -0.3
80,322 + SM_b20071 0.63 -0.9
80,322 + SM_b20071 0.63 -0.3
80,322 + SM_b20071 0.63 -1.1
80,323 - SM_b20071 0.63 -0.5
80,323 - SM_b20071 0.63 -0.1
80,323 - SM_b20071 0.63 -1.1
80,628 + SM_b20071 0.88 +0.1
80,629 - SM_b20071 0.88 +0.5
80,629 - SM_b20071 0.88 -0.2
80,731 - +0.5
80,754 - +0.7
80,848 + +0.9
81,217 - +0.6
81,392 + SM_b20072 0.16 -0.2
81,392 + SM_b20072 0.16 -0.4
81,393 - SM_b20072 0.17 -0.3
81,721 - SM_b20072 0.52 -0.3
81,853 - SM_b20072 0.66 +0.4
81,853 - SM_b20072 0.66 -0.3
82,157 + +0.1
82,157 + -0.5
82,158 - -0.5
82,158 - +0.1
82,172 + -1.5
82,278 + +1.0
82,279 - -1.3
82,279 - +0.2
82,281 - -1.1
82,380 + +0.2
82,381 - -0.1
82,381 - -0.0
82,381 - -0.8
82,450 + SM_b20073 0.14 -0.2
82,450 + SM_b20073 0.14 +0.3
82,451 - SM_b20073 0.14 +0.2
82,547 + SM_b20073 0.25 +0.0
82,548 - SM_b20073 0.25 -0.2
82,617 + SM_b20073 0.33 -0.3
82,618 - SM_b20073 0.33 +0.3
82,716 + SM_b20073 0.45 -0.2
82,716 + SM_b20073 0.45 +0.1
82,971 + SM_b20073 0.75 +0.2
82,971 + SM_b20073 0.75 -1.0
82,978 + SM_b20073 0.75 -1.1
82,978 + SM_b20073 0.75 -0.1

Or see this region's nucleotide sequence