Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20044

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20043 and SM_b20044 are separated by 460 nucleotidesSM_b20044 and SM_b20045 are separated by 155 nucleotides SM_b20043: SM_b20043 - hypothetical protein, at 53,787 to 54,629 _b20043 SM_b20044: SM_b20044 - replication initiation protein RepC, at 55,090 to 56,400 _b20044 SM_b20045: SM_b20045 - replication protein B, at 56,556 to 57,560 _b20045 Position (kb) 55 56 57Strain fitness (log2 ratio) -1 0 1at 54.177 kb on - strand, within SM_b20043at 54.208 kb on + strand, within SM_b20043at 54.232 kb on + strand, within SM_b20043at 54.232 kb on + strand, within SM_b20043at 54.286 kb on - strand, within SM_b20043at 54.400 kb on - strand, within SM_b20043at 54.400 kb on - strand, within SM_b20043at 54.400 kb on - strand, within SM_b20043at 54.440 kb on + strand, within SM_b20043at 54.476 kb on - strand, within SM_b20043at 54.525 kb on - strand, within SM_b20043at 54.585 kb on + strandat 54.586 kb on - strandat 54.588 kb on - strandat 54.643 kb on - strandat 54.775 kb on + strandat 54.971 kb on - strandat 55.066 kb on + strandat 55.066 kb on + strandat 55.066 kb on + strandat 56.558 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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54,177 - SM_b20043 0.46 -0.3
54,208 + SM_b20043 0.50 +1.2
54,232 + SM_b20043 0.53 -0.3
54,232 + SM_b20043 0.53 -1.1
54,286 - SM_b20043 0.59 -0.2
54,400 - SM_b20043 0.73 +0.1
54,400 - SM_b20043 0.73 -0.2
54,400 - SM_b20043 0.73 +0.0
54,440 + SM_b20043 0.77 +0.6
54,476 - SM_b20043 0.82 -0.7
54,525 - SM_b20043 0.88 +0.1
54,585 + -0.1
54,586 - -0.6
54,588 - -1.1
54,643 - +1.0
54,775 + +0.7
54,971 - +0.1
55,066 + +0.6
55,066 + -0.0
55,066 + -0.3
56,558 - -0.8

Or see this region's nucleotide sequence