Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18545

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18540 and RS_RS18545 are separated by 3 nucleotidesRS_RS18545 and RS_RS18550 overlap by 4 nucleotides RS_RS18540: RS_RS18540 - poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, at 372,386 to 374,515 _RS18540 RS_RS18545: RS_RS18545 - poly-beta-1,6 N-acetyl-D-glucosamine synthase, at 374,519 to 375,793 _RS18545 RS_RS18550: RS_RS18550 - hypothetical protein, at 375,790 to 376,779 _RS18550 Position (kb) 374 375 376Strain fitness (log2 ratio) -2 -1 0 1 2at 373.568 kb on + strand, within RS_RS18540at 373.569 kb on - strand, within RS_RS18540at 373.730 kb on + strand, within RS_RS18540at 373.730 kb on + strand, within RS_RS18540at 373.730 kb on + strand, within RS_RS18540at 373.731 kb on - strand, within RS_RS18540at 373.748 kb on + strand, within RS_RS18540at 373.748 kb on + strand, within RS_RS18540at 373.749 kb on - strand, within RS_RS18540at 373.749 kb on - strand, within RS_RS18540at 373.749 kb on - strand, within RS_RS18540at 373.800 kb on - strand, within RS_RS18540at 374.081 kb on + strand, within RS_RS18540at 374.105 kb on + strand, within RS_RS18540at 374.105 kb on + strand, within RS_RS18540at 374.105 kb on + strand, within RS_RS18540at 374.106 kb on - strand, within RS_RS18540at 374.297 kb on + strand, within RS_RS18540at 374.298 kb on - strand, within RS_RS18540at 374.298 kb on - strand, within RS_RS18540at 374.307 kb on - strandat 374.564 kb on + strandat 374.565 kb on - strandat 374.585 kb on + strandat 374.711 kb on + strand, within RS_RS18545at 374.712 kb on - strand, within RS_RS18545at 374.774 kb on + strand, within RS_RS18545at 374.774 kb on + strand, within RS_RS18545at 374.774 kb on + strand, within RS_RS18545at 374.775 kb on - strand, within RS_RS18545at 375.131 kb on + strand, within RS_RS18545at 375.131 kb on + strand, within RS_RS18545at 375.131 kb on + strand, within RS_RS18545at 375.132 kb on - strand, within RS_RS18545at 375.201 kb on - strand, within RS_RS18545at 375.329 kb on + strand, within RS_RS18545at 375.330 kb on - strand, within RS_RS18545at 375.330 kb on - strand, within RS_RS18545at 375.380 kb on + strand, within RS_RS18545at 375.462 kb on - strand, within RS_RS18545at 375.638 kb on + strand, within RS_RS18545at 375.771 kb on + strandat 375.771 kb on + strandat 375.771 kb on + strandat 375.772 kb on - strandat 375.772 kb on - strandat 375.772 kb on - strandat 375.772 kb on - strandat 375.772 kb on - strandat 375.801 kb on - strandat 375.937 kb on + strand, within RS_RS18550at 375.937 kb on + strand, within RS_RS18550at 375.938 kb on - strand, within RS_RS18550at 375.938 kb on - strand, within RS_RS18550at 375.938 kb on - strand, within RS_RS18550at 375.938 kb on - strand, within RS_RS18550at 375.938 kb on - strand, within RS_RS18550at 376.001 kb on - strand, within RS_RS18550at 376.585 kb on + strand, within RS_RS18550at 376.585 kb on + strand, within RS_RS18550

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
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373,568 + RS_RS18540 0.55 -0.0
373,569 - RS_RS18540 0.56 +1.8
373,730 + RS_RS18540 0.63 -0.6
373,730 + RS_RS18540 0.63 -0.4
373,730 + RS_RS18540 0.63 -0.2
373,731 - RS_RS18540 0.63 +0.4
373,748 + RS_RS18540 0.64 +0.1
373,748 + RS_RS18540 0.64 -0.3
373,749 - RS_RS18540 0.64 +0.1
373,749 - RS_RS18540 0.64 +0.1
373,749 - RS_RS18540 0.64 +0.3
373,800 - RS_RS18540 0.66 +0.6
374,081 + RS_RS18540 0.80 +0.1
374,105 + RS_RS18540 0.81 +0.0
374,105 + RS_RS18540 0.81 -1.0
374,105 + RS_RS18540 0.81 -0.4
374,106 - RS_RS18540 0.81 -0.8
374,297 + RS_RS18540 0.90 -1.2
374,298 - RS_RS18540 0.90 +0.1
374,298 - RS_RS18540 0.90 -0.7
374,307 - -0.3
374,564 + -0.2
374,565 - +0.9
374,585 + -0.1
374,711 + RS_RS18545 0.15 -0.1
374,712 - RS_RS18545 0.15 -0.2
374,774 + RS_RS18545 0.20 -0.5
374,774 + RS_RS18545 0.20 -0.2
374,774 + RS_RS18545 0.20 +0.1
374,775 - RS_RS18545 0.20 +0.0
375,131 + RS_RS18545 0.48 -0.2
375,131 + RS_RS18545 0.48 -0.0
375,131 + RS_RS18545 0.48 +0.4
375,132 - RS_RS18545 0.48 +1.1
375,201 - RS_RS18545 0.53 -0.0
375,329 + RS_RS18545 0.64 +0.2
375,330 - RS_RS18545 0.64 +0.0
375,330 - RS_RS18545 0.64 -0.1
375,380 + RS_RS18545 0.68 +0.1
375,462 - RS_RS18545 0.74 +1.1
375,638 + RS_RS18545 0.88 -0.0
375,771 + -0.5
375,771 + -0.5
375,771 + +0.4
375,772 - -0.9
375,772 - -0.7
375,772 - -0.2
375,772 - +0.3
375,772 - -0.1
375,801 - +2.3
375,937 + RS_RS18550 0.15 +0.3
375,937 + RS_RS18550 0.15 +0.1
375,938 - RS_RS18550 0.15 +0.2
375,938 - RS_RS18550 0.15 +0.9
375,938 - RS_RS18550 0.15 -0.2
375,938 - RS_RS18550 0.15 +0.4
375,938 - RS_RS18550 0.15 +0.1
376,001 - RS_RS18550 0.21 +0.5
376,585 + RS_RS18550 0.80 +0.3
376,585 + RS_RS18550 0.80 -2.5

Or see this region's nucleotide sequence