Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18540

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS18535 and RS_RS18540 are separated by 50 nucleotidesRS_RS18540 and RS_RS18545 are separated by 3 nucleotides RS_RS18535: RS_RS18535 - poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA, at 369,915 to 372,335 _RS18535 RS_RS18540: RS_RS18540 - poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, at 372,386 to 374,515 _RS18540 RS_RS18545: RS_RS18545 - poly-beta-1,6 N-acetyl-D-glucosamine synthase, at 374,519 to 375,793 _RS18545 Position (kb) 372 373 374 375Strain fitness (log2 ratio) -1 0 1 2at 371.464 kb on - strand, within RS_RS18535at 371.464 kb on - strand, within RS_RS18535at 371.464 kb on - strand, within RS_RS18535at 371.554 kb on - strand, within RS_RS18535at 371.814 kb on + strand, within RS_RS18535at 371.823 kb on - strand, within RS_RS18535at 371.904 kb on + strand, within RS_RS18535at 371.904 kb on + strand, within RS_RS18535at 371.990 kb on + strand, within RS_RS18535at 371.991 kb on - strand, within RS_RS18535at 371.991 kb on - strand, within RS_RS18535at 372.049 kb on - strand, within RS_RS18535at 372.069 kb on + strand, within RS_RS18535at 372.144 kb on + strandat 372.163 kb on - strandat 372.310 kb on - strandat 372.716 kb on + strand, within RS_RS18540at 372.717 kb on - strand, within RS_RS18540at 372.717 kb on - strand, within RS_RS18540at 373.167 kb on - strand, within RS_RS18540at 373.167 kb on - strand, within RS_RS18540at 373.326 kb on + strand, within RS_RS18540at 373.326 kb on + strand, within RS_RS18540at 373.343 kb on + strand, within RS_RS18540at 373.344 kb on - strand, within RS_RS18540at 373.349 kb on + strand, within RS_RS18540at 373.349 kb on + strand, within RS_RS18540at 373.350 kb on - strand, within RS_RS18540at 373.350 kb on - strand, within RS_RS18540at 373.350 kb on - strand, within RS_RS18540at 373.350 kb on - strand, within RS_RS18540at 373.430 kb on + strand, within RS_RS18540at 373.481 kb on + strand, within RS_RS18540at 373.481 kb on + strand, within RS_RS18540at 373.482 kb on - strand, within RS_RS18540at 373.482 kb on - strand, within RS_RS18540at 373.482 kb on - strand, within RS_RS18540at 373.568 kb on + strand, within RS_RS18540at 373.569 kb on - strand, within RS_RS18540at 373.730 kb on + strand, within RS_RS18540at 373.730 kb on + strand, within RS_RS18540at 373.730 kb on + strand, within RS_RS18540at 373.731 kb on - strand, within RS_RS18540at 373.748 kb on + strand, within RS_RS18540at 373.748 kb on + strand, within RS_RS18540at 373.749 kb on - strand, within RS_RS18540at 373.749 kb on - strand, within RS_RS18540at 373.749 kb on - strand, within RS_RS18540at 373.800 kb on - strand, within RS_RS18540at 374.081 kb on + strand, within RS_RS18540at 374.105 kb on + strand, within RS_RS18540at 374.105 kb on + strand, within RS_RS18540at 374.105 kb on + strand, within RS_RS18540at 374.106 kb on - strand, within RS_RS18540at 374.297 kb on + strand, within RS_RS18540at 374.298 kb on - strand, within RS_RS18540at 374.298 kb on - strand, within RS_RS18540at 374.307 kb on - strandat 374.564 kb on + strandat 374.565 kb on - strandat 374.585 kb on + strandat 374.711 kb on + strand, within RS_RS18545at 374.712 kb on - strand, within RS_RS18545at 374.774 kb on + strand, within RS_RS18545at 374.774 kb on + strand, within RS_RS18545at 374.774 kb on + strand, within RS_RS18545at 374.775 kb on - strand, within RS_RS18545at 375.131 kb on + strand, within RS_RS18545at 375.131 kb on + strand, within RS_RS18545at 375.131 kb on + strand, within RS_RS18545at 375.132 kb on - strand, within RS_RS18545at 375.201 kb on - strand, within RS_RS18545at 375.329 kb on + strand, within RS_RS18545at 375.330 kb on - strand, within RS_RS18545at 375.330 kb on - strand, within RS_RS18545at 375.380 kb on + strand, within RS_RS18545at 375.462 kb on - strand, within RS_RS18545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
remove
371,464 - RS_RS18535 0.64 +0.2
371,464 - RS_RS18535 0.64 +1.1
371,464 - RS_RS18535 0.64 +0.6
371,554 - RS_RS18535 0.68 +0.9
371,814 + RS_RS18535 0.78 -0.7
371,823 - RS_RS18535 0.79 +0.5
371,904 + RS_RS18535 0.82 -0.5
371,904 + RS_RS18535 0.82 +0.4
371,990 + RS_RS18535 0.86 +0.1
371,991 - RS_RS18535 0.86 +0.2
371,991 - RS_RS18535 0.86 -0.5
372,049 - RS_RS18535 0.88 +0.3
372,069 + RS_RS18535 0.89 -0.5
372,144 + -0.2
372,163 - +0.1
372,310 - +0.1
372,716 + RS_RS18540 0.15 -1.7
372,717 - RS_RS18540 0.16 +0.9
372,717 - RS_RS18540 0.16 -0.5
373,167 - RS_RS18540 0.37 -1.0
373,167 - RS_RS18540 0.37 -0.4
373,326 + RS_RS18540 0.44 +0.8
373,326 + RS_RS18540 0.44 -0.4
373,343 + RS_RS18540 0.45 +0.1
373,344 - RS_RS18540 0.45 -0.4
373,349 + RS_RS18540 0.45 -1.3
373,349 + RS_RS18540 0.45 +0.5
373,350 - RS_RS18540 0.45 +0.5
373,350 - RS_RS18540 0.45 -0.0
373,350 - RS_RS18540 0.45 +0.3
373,350 - RS_RS18540 0.45 +0.1
373,430 + RS_RS18540 0.49 +1.1
373,481 + RS_RS18540 0.51 -0.6
373,481 + RS_RS18540 0.51 -0.2
373,482 - RS_RS18540 0.51 -0.6
373,482 - RS_RS18540 0.51 -0.5
373,482 - RS_RS18540 0.51 -0.8
373,568 + RS_RS18540 0.55 -0.0
373,569 - RS_RS18540 0.56 +1.8
373,730 + RS_RS18540 0.63 -0.6
373,730 + RS_RS18540 0.63 -0.4
373,730 + RS_RS18540 0.63 -0.2
373,731 - RS_RS18540 0.63 +0.4
373,748 + RS_RS18540 0.64 +0.1
373,748 + RS_RS18540 0.64 -0.3
373,749 - RS_RS18540 0.64 +0.1
373,749 - RS_RS18540 0.64 +0.1
373,749 - RS_RS18540 0.64 +0.3
373,800 - RS_RS18540 0.66 +0.6
374,081 + RS_RS18540 0.80 +0.1
374,105 + RS_RS18540 0.81 +0.0
374,105 + RS_RS18540 0.81 -1.0
374,105 + RS_RS18540 0.81 -0.4
374,106 - RS_RS18540 0.81 -0.8
374,297 + RS_RS18540 0.90 -1.2
374,298 - RS_RS18540 0.90 +0.1
374,298 - RS_RS18540 0.90 -0.7
374,307 - -0.3
374,564 + -0.2
374,565 - +0.9
374,585 + -0.1
374,711 + RS_RS18545 0.15 -0.1
374,712 - RS_RS18545 0.15 -0.2
374,774 + RS_RS18545 0.20 -0.5
374,774 + RS_RS18545 0.20 -0.2
374,774 + RS_RS18545 0.20 +0.1
374,775 - RS_RS18545 0.20 +0.0
375,131 + RS_RS18545 0.48 -0.2
375,131 + RS_RS18545 0.48 -0.0
375,131 + RS_RS18545 0.48 +0.4
375,132 - RS_RS18545 0.48 +1.1
375,201 - RS_RS18545 0.53 -0.0
375,329 + RS_RS18545 0.64 +0.2
375,330 - RS_RS18545 0.64 +0.0
375,330 - RS_RS18545 0.64 -0.1
375,380 + RS_RS18545 0.68 +0.1
375,462 - RS_RS18545 0.74 +1.1

Or see this region's nucleotide sequence