Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32375 and AZOBR_RS32380 are separated by 6 nucleotides AZOBR_RS32380 and AZOBR_RS32385 are separated by 147 nucleotides
AZOBR_RS32375: AZOBR_RS32375 - hypothetical protein, at 629,239 to 630,351
_RS32375
AZOBR_RS32380: AZOBR_RS32380 - hypothetical protein, at 630,358 to 632,478
_RS32380
AZOBR_RS32385: AZOBR_RS32385 - FAD-dependent oxidoreductase, at 632,626 to 633,930
_RS32385
Position (kb) 630
631
632
633 Strain fitness (log2 ratio) -2
-1
0
1
2 at 629.373 kb on + strand, within AZOBR_RS32375 at 629.373 kb on + strand, within AZOBR_RS32375 at 629.569 kb on + strand, within AZOBR_RS32375 at 629.806 kb on + strand, within AZOBR_RS32375 at 630.212 kb on - strand, within AZOBR_RS32375 at 630.212 kb on - strand, within AZOBR_RS32375 at 630.212 kb on - strand, within AZOBR_RS32375 at 630.223 kb on + strand, within AZOBR_RS32375 at 630.223 kb on + strand, within AZOBR_RS32375 at 630.223 kb on + strand, within AZOBR_RS32375 at 630.331 kb on + strand at 630.331 kb on + strand at 630.629 kb on + strand, within AZOBR_RS32380 at 630.630 kb on - strand, within AZOBR_RS32380 at 630.630 kb on - strand, within AZOBR_RS32380 at 630.680 kb on + strand, within AZOBR_RS32380 at 630.681 kb on - strand, within AZOBR_RS32380 at 630.881 kb on + strand, within AZOBR_RS32380 at 630.881 kb on + strand, within AZOBR_RS32380 at 631.004 kb on + strand, within AZOBR_RS32380 at 631.005 kb on - strand, within AZOBR_RS32380 at 632.072 kb on + strand, within AZOBR_RS32380 at 632.400 kb on - strand at 632.585 kb on - strand at 632.663 kb on + strand at 632.664 kb on - strand at 632.664 kb on - strand at 632.664 kb on - strand at 632.814 kb on - strand, within AZOBR_RS32385 at 632.814 kb on - strand, within AZOBR_RS32385 at 633.188 kb on + strand, within AZOBR_RS32385 at 633.189 kb on - strand, within AZOBR_RS32385 at 633.405 kb on + strand, within AZOBR_RS32385
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 629,373 + AZOBR_RS32375 0.12 +0.1 629,373 + AZOBR_RS32375 0.12 -0.5 629,569 + AZOBR_RS32375 0.30 -0.7 629,806 + AZOBR_RS32375 0.51 +0.3 630,212 - AZOBR_RS32375 0.87 -0.2 630,212 - AZOBR_RS32375 0.87 -0.6 630,212 - AZOBR_RS32375 0.87 -0.8 630,223 + AZOBR_RS32375 0.88 -1.4 630,223 + AZOBR_RS32375 0.88 -1.1 630,223 + AZOBR_RS32375 0.88 -0.2 630,331 + -0.0 630,331 + +0.1 630,629 + AZOBR_RS32380 0.13 +0.1 630,630 - AZOBR_RS32380 0.13 -1.9 630,630 - AZOBR_RS32380 0.13 -0.7 630,680 + AZOBR_RS32380 0.15 +1.5 630,681 - AZOBR_RS32380 0.15 -1.5 630,881 + AZOBR_RS32380 0.25 -1.6 630,881 + AZOBR_RS32380 0.25 -0.4 631,004 + AZOBR_RS32380 0.30 -0.4 631,005 - AZOBR_RS32380 0.31 -0.5 632,072 + AZOBR_RS32380 0.81 +2.3 632,400 - +0.9 632,585 - -1.4 632,663 + +1.9 632,664 - -2.5 632,664 - +0.2 632,664 - -1.1 632,814 - AZOBR_RS32385 0.14 -0.6 632,814 - AZOBR_RS32385 0.14 -1.8 633,188 + AZOBR_RS32385 0.43 -1.2 633,189 - AZOBR_RS32385 0.43 -2.2 633,405 + AZOBR_RS32385 0.60 -1.8
Or see this region's nucleotide sequence